|Top goalscorer||Egidijus Juška (24)
Toomas Krõm (24)
The 2000 Meistriliiga was the 10th season of the Meistriliiga, Estonia's premier football league. Levadia won their second title.
||Qualification or relegation
|1||Levadia (C)||28||23||5||0||88||20||+68||74||2001–02 UEFA Champions League First qualifying round|
|2||Flora||28||16||7||5||51||25||+26||55||2001–02 UEFA Cup Qualifying round|
|3||TVMK||28||14||6||8||54||29||+25||48||2001 UEFA Intertoto Cup First round|
|5||Trans||28||12||7||9||64||40||+24||43||2001–02 UEFA Cup Qualifying round 1|
|8||Valga (R)||28||2||2||24||11||94||−83||8||Relegation to the 2001 Esiliiga|
Source: Estonian Football Association
Rules for classification: 1) points; 2) number of wins; 3) head-to-head points; 4) head-to-head goal difference; 5) head-to-head goals scored; 6) goal difference; 7) number of goals scored.
1Qualified as cup runners-up
(C) = Champion; (R) = Relegated; (P) = Promoted; (E) = Eliminated; (O) = Play-off winner; (A) = Advances to a further round.
Only applicable when the season is not finished:
(Q) = Qualified to the phase of tournament indicated; (TQ) = Qualified to tournament, but not yet to the particular phase indicated; (RQ) = Qualified to the relegation tournament indicated; (DQ) = Disqualified from tournament.
Kuressaare were awarded the playoff after Tervis withdrew due to unavailability of players active for the Estonian U-18 team.
|1||Egidijus Juška||TVMK Tallinn||24|
|3||Maksim Gruznov||Trans Narva||22|
|4||Vitalijs Teplovs||TVMK Tallinn||13|
|6||Marius Dovydėnas||Tulevik Viljandi||12|
|8||Meelis Rooba||Flora Tallinn||10|
|–||Dmitry Lipartov||FC Narva Trans||10|