||This article includes a list of references, related reading or external links, but its sources remain unclear because it lacks inline citations. (April 2014)|
|Developer(s)||Ariel Schwartz (UC Berkeley), Lior Pachter (UC Berkeley)|
|Operating system||UNIX, Linux, Mac|
AMAP is a multiple sequence alignment program based on a new approach to multiple alignment called sequence annealing. This approach consists of building up the multiple alignment one match at a time, thereby circumventing many of the problems of progressive alignment. The AMAP parameters can be used to tune the sensivitiy-specificity tradeoff.
This program accepts sequences in FASTA format.
A. Schwartz and L. Pachter, Multiple alignment by sequence annealing, Bioinformatics 23, e24-e29 (2006).