An anaerobic organism or anaerobe is any organism that does not require oxygen for growth. It may react negatively or even die if oxygen is present. An anaerobic organism may be unicellular (e.g. protozoans, bacteria) or multicellular (e.g. Nereid (worm) polychaetes, juvenile Trichinella spiralis (pork worm) parasites). For practical purposes, there are three categories of anaerobe:
- Obligate anaerobes, which are harmed by the presence of oxygen.
- Aerotolerant organisms, which cannot use oxygen for growth, but tolerate its presence.
- Facultative anaerobes, which can grow without oxygen but use oxygen if it is present.
Obligate anaerobes may use fermentation or anaerobic respiration. Aerotolerant organisms are strictly fermentative. In the presence of oxygen, facultative anaerobes use aerobic respiration; without oxygen, some of them ferment; some use anaerobic respiration.
There are many anaerobic fermentative reactions.
Fermentative anaerobic organisms mostly use the lactic acid fermentation pathway:
The energy released in this equation is approximately 150 kJ per mol, which is conserved in regenerating two ATP from ADP per glucose. This is only 5% of the energy per sugar molecule that the typical aerobic reaction generates.
Plants and fungi (e.g., yeasts) in general use alcohol (ethanol) fermentation when oxygen becomes limiting:
- C6H12O6 + 2 ADP + 2 phosphate → 2 C2H5OH + 2 CO2↑ + 2 ATP
The energy released is about 180 kJ per mol, which is conserved in regenerating two ATP from ADP per glucose.
Anaerobic bacteria and archaea use these and many other fermentative pathways, e.g., propionic acid fermentation, butyric acid fermentation, solvent fermentation, mixed acid fermentation, butanediol fermentation, Stickland fermentation, acetogenesis, or methanogenesis.
Since normal microbial culturing occurs in atmospheric air, which is an aerobic environment, the culturing of anaerobes poses a problem. Therefore, a number of techniques are employed by microbiologists when culturing anaerobic organisms, for example, handling the bacteria in a glovebox filled with nitrogen or the use of other specially sealed containers, or techniques such as injection of the bacteria into a dicot plant, which is an environment with limited oxygen. The GasPak System is an isolated container that achieves an anaerobic environment by the reaction of water with sodium borohydride and sodium bicarbonate tablets to produce hydrogen gas and carbon dioxide. Hydrogen then reacts with oxygen gas on a palladium catalyst to produce more water, thereby removing oxygen gas. The issue with the Gaspak method is that an adverse reaction can take place where the bacteria may die, which is why a thioglycollate medium should be used. The Thioglycollate supplies a medium mimicking that of a Dicot, thus providing not only an anaerobic environment but all the nutrients needed for the bacteria to thrive.
Certain antibiotics may or may not be effective against anaerobes or aerobes depending on the intracellular environment, cellular permeability, or enzymes produced by the organism. A few well-described mechanisms have been proposed as to why an anaerobe may or may not be susceptible to a given antibiotic; however, a few remain unclear.
A specific class of β-lactam antibiotics called cephamycins (cefoxitin, cefotetan…) are particularly effective against anaerobes because of their ability to maintain structural integrity in the presence of plasmid and chromosomally-mediated β-lactamases. Although cephamycins are typically effective against anaerobes, resistance can arise due to decreased cell permeability or production of different penicillin binding proteins (PBP).
Metronidazole, another antibiotic which has proven to be effective specifically against anaerobes, is a prodrug where its antimicrobial properties are only effective in anaerobic environments. Once inside the cell, metronidazole is metabolized and partially reduced by ferredoxin, a major component involved in the anaerobic electron transport chain. Metronidazole metabolites become incorporated into cellular DNA and form unstable molecules which inhibit protein synthesis ultimately killing the cell. Because metronidazole requires a reduced environment unique to anaerobes, it is not effective against aerobic bacteria.
A major class of antibiotics, the aminoglycosides (streptomycin, kanamycin, etc.) are not effective against anaerobic bacteria because of their inability to reach the ribosome. In order to enter a cell, aminoglycosides require an energy-dependent phase using oxygen or nitrate in electron transport functions. Because anaerobes do not utilize oxygen or nitrate for electron transport mediated functions, aminoglycosides cannot enter anaerobic cells to inhibit ribosomal activity.
- Aerobic organism
- Anaerobic infection
- Anaerobic digestion
- Facultative anaerobic organism
- Hypoxia (environmental)
- Fermentation (biochemistry)
- Waste management
- Oxygen catastrophe
- Spinoloricus cinzia
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