Andy Brass

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Andy Brass
Andy Brass P1010738 (13870383443).jpg
Born Andrew M. Brass
Fields Bioinformatics
Institutions
Alma mater University of Edinburgh
Thesis Molecular dynamics simulations of fluorite structure crystals (1987)
Doctoral students
Website
www.manchester.ac.uk/research/andy.brass

Andrew M. Brass is a Professor of Bioinformatics at the University of Manchester in the School of Computer Science and Faculty of Life Sciences.[21][22][23][24][25]

Education[edit]

Brass was educated at the University of Edinburgh, receiving his PhD on Solid-state physics in 1987.[26]

Research[edit]

Following his PhD, Brass worked at McMaster University[27][28] in Canada on a NATO fellowship to study aspects of high-temperature superconductivity and strongly coupled electron systems. In 1990 he moved to the University of Manchester[29][30] to become a founding member of the bioinformatics group, where he has a wide range of projects in protein function prediction, gene expression analysis, intelligent integration,[31] automated curation,[32] and bioinformatics education.[33]

References[edit]

  1. ^ Fisher, Paul Ryan (2009). Towards a systematic approach to the large-scale analysis of genotype-phenotype correlations (PhD thesis). University of Manchester. 
  2. ^ Noyes, H.; Brass, A.; Obara, I.; Anderson, S.; Archibald, A. L.; Bradley, D. G.; Fisher, P.; Freeman, A.; Gibson, J.; Gicheru, M.; Hall, L.; Hanotte, O.; Hulme, H.; McKeever, D.; Murray, C.; Oh, S. J.; Tate, C.; Smith, K.; Tapio, M.; Wambugu, J.; Williams, D. J.; Agaba, M.; Kemp, S. J. (2011). "Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection". Proceedings of the National Academy of Sciences 108 (22): 9304–9309. doi:10.1073/pnas.1013486108. PMC 3107286. PMID 21593421. 
  3. ^ Fisher, P.; Noyes, H.; Kemp, S.; Stevens, R.; Brass, A. (2009). "A Systematic Strategy for the Discovery of Candidate Genes Responsible for Phenotypic Variation". "Cardiovascular Genomics". Methods in molecular biology (Clifton, N.J.). Methods in Molecular Biology 573: 329–345. doi:10.1007/978-1-60761-247-6_18. ISBN 978-1-60761-246-9. PMID 19763936. 
  4. ^ Rennie, C.; Hulme, H.; Fisher, P.; Halp, L.; Agaba, M.; Noyes, H. A.; Kemp, S. J.; Brass, A. (2008). "A systematic, data-driven approach to the combined analysis of microarray and QTL data". Developments in biologicals. Developments in Biologicals 132: 293–299. doi:10.1159/000317174. ISBN 978-3-8055-8619-1. PMID 18817316. 
  5. ^ a b Fisher, P.; Hedeler, C.; Wolstencroft, K.; Hulme, H.; Noyes, H.; Kemp, S.; Stevens, R.; Brass, A. (2007). "A systematic strategy for large-scale analysis of genotype phenotype correlations: Identification of candidate genes involved in African trypanosomiasis". Nucleic Acids Research 35 (16): 5625–5633. doi:10.1093/nar/gkm623. PMC 2018629. PMID 17709344. 
  6. ^ Han, Nam Shik (2013). Systematic approaches for modelling and visualising responses to perturbation of transcriptional regulatory networks (PhD thesis). University of Manchester. 
  7. ^ Ranandeh Kalankesh, Leila (2010). Exploring nature of the structured data in GP electronic patient records (PhD thesis). University of Manchester. 
  8. ^ Kalankesh, L. R.; Stevens, R.; Brass, A. (2012). "The language of gene ontology: A Zipf's law analysis". BMC Bioinformatics 13: 127. doi:10.1186/1471-2105-13-127. PMC 3473240. PMID 22676436. 
  9. ^ Mallon, Ann-Marie (2004). Comparative analysis of the mouse and human genomes (PhD thesis). University of Manchester. 
  10. ^ Morrison, Norman (2003). Microarray data analysis: a comparison of normalisation techniques and case study (PhD thesis). University of Manchester. 
  11. ^ Tate, Catriona Mary (2010). Effect of probe-target sequence mismatches on the results of microarray hybridisations: position-dependence, modelling and impact of evolutionary distance (PhD thesis). University of Manchester. 
  12. ^ Noyes, H.; Brass, A.; Obara, I.; Anderson, S.; Archibald, A. L.; Bradley, D. G.; Fisher, P.; Freeman, A.; Gibson, J.; Gicheru, M.; Hall, L.; Hanotte, O.; Hulme, H.; McKeever, D.; Murray, C.; Oh, S. J.; Tate, C.; Smith, K.; Tapio, M.; Wambugu, J.; Williams, D. J.; Agaba, M.; Kemp, S. J. (2011). "Genetic and expression analysis of cattle identifies candidate genes in pathways responding to Trypanosoma congolense infection". Proceedings of the National Academy of Sciences 108 (22): 9304–9309. doi:10.1073/pnas.1013486108. PMC 3107286. PMID 21593421. 
  13. ^ Tipney, Hannah Jane (2006). Bioinformatics as a tool to predict gene function in Williams-Beuren Syndrome (PhD thesis). University of Manchester. 
  14. ^ Hinsley, T. A.; Cunliffe, P.; Tipney, H. J.; Brass, A.; Tassabehji, M. (2009). "Comparison of TFII-I gene family members deleted in Williams-Beuren syndrome". Protein Science 13 (10): 2588–2599. doi:10.1110/ps.04747604. PMC 2286546. PMID 15388857. 
  15. ^ Stevens, R. D.; Tipney, H. J.; Wroe, C. J.; Oinn, T. M.; Senger, M.; Lord, P. W.; Goble, C. A.; Brass, A.; Tassabehji, M. (2004). "Exploring Williams-Beuren syndrome using myGrid". Bioinformatics 20: i303–i310. doi:10.1093/bioinformatics/bth944. PMID 15262813. 
  16. ^ Tipney, H. J.; Hinsley, T. A.; Brass, A.; Metcalfe, K.; Donnai, D.; Tassabehji, M. (2004). "Isolation and characterisation of GTF2IRD2, a novel fusion gene and member of the TFII-I family of transcription factors, deleted in Williams–Beuren syndrome". European Journal of Human Genetics 12 (7): 551–560. doi:10.1038/sj.ejhg.5201174. PMID 15100712. 
  17. ^ Wolstencroft, Katherine Jane (2005). Ontological methods for structuring and managing protein family resources (PhD thesis). University of Manchester. 
  18. ^ Wolstencroft, K.; Lord, P.; Tabernero, L.; Brass, A.; Stevens, R. (2006). "Protein classification using ontology classification". Bioinformatics 22 (14): e530–e538. doi:10.1093/bioinformatics/btl208. PMID 16873517. 
  19. ^ Wolstencroft, K.; McEntire, R.; Stevens, R.; Tabernero, L.; Brass, A. (2004). "Constructing ontology-driven protein family databases". Bioinformatics 21 (8): 1685–1692. doi:10.1093/bioinformatics/bti158. PMID 15564301. 
  20. ^ Wolstencroft, K. J.; Stevens, R.; Tabernero, L.; Brass, A. (2004). "PhosphaBase: An ontology-driven database resource for protein phosphatases". Proteins: Structure, Function, and Bioinformatics 58 (2): 290–294. doi:10.1002/prot.20325. PMID 15558746. 
  21. ^ List of publications from Google Scholar
  22. ^ List of publications from Microsoft Academic Search
  23. ^ List of publications from the DBLP Bibliography Server
  24. ^ Andy Brass from the Scopus bibliographic database.
  25. ^ Andy Brass from the ACM Portal
  26. ^ Brass, Andrew (1987). Molecular dynamics simulations of fluorite structure crystals (PhD thesis). University of Edinburgh. 
  27. ^ Jensen, H.; Brass, A.; Berlinsky, A. (1988). "Lattice deformations and plastic flow through bottlenecks in a two-dimensional model for flux pinning in type-II superconductors". Physical Review Letters 60 (16): 1676–1679. doi:10.1103/PhysRevLett.60.1676. PMID 10038108. 
  28. ^ Jensen, H.; Brass, A.; Brechet, Y.; Berlinsky, A. (1988). "Current-voltage characteristics in a two-dimensional model for flux flow in type-II superconductors". Physical Review B 38 (13): 9235. doi:10.1103/PhysRevB.38.9235. 
  29. ^ Scott, J. E.; Cummings, C.; Brass, A.; Chen, Y. (1991). "Secondary and tertiary structures of hyaluronan in aqueous solution, investigated by rotary shadowing-electron microscopy and computer simulation. Hyaluronan is a very efficient network-forming polymer". The Biochemical journal. 274 ( Pt 3) (Pt 3): 699–705. PMC 1149968. PMID 2012600. 
  30. ^ Tuckwell, D. S.; Brass, A.; Humphries, M. J. (1992). "Homology modelling of integrin EF-hands. Evidence for widespread use of a conserved cation-binding site". The Biochemical journal. 285 ( Pt 1) (Pt 1): 325–331. PMC 1132784. PMID 1322124. 
  31. ^ Lord, P. W.; Stevens, R. D.; Brass, A.; Goble, C. A. (2003). "Investigating semantic similarity measures across the Gene Ontology: The relationship between sequence and annotation". Bioinformatics 19 (10): 1275–1283. doi:10.1093/bioinformatics/btg153. PMID 12835272. 
  32. ^ Taylor, C. F.; Paton, N. W.; Garwood, K. L.; Kirby, P. D.; Stead, D. A.; Yin, Z.; Deutsch, E. W.; Selway, L.; Walker, J.; Riba-Garcia, I.; Mohammed, S.; Deery, M. J.; Howard, J. A.; Dunkley, T.; Aebersold, R.; Kell, D. B.; Lilley, K. S.; Roepstorff, P.; Yates Jr, J. R.; Brass, A.; Brown, A. J. P.; Cash, P.; Gaskell, S. J.; Hubbard, S. J.; Oliver, S. G. (2003). "A systematic approach to modeling, capturing, and disseminating proteomics experimental data". Nature Biotechnology 21 (3): 247–254. doi:10.1038/nbt0303-247. PMID 12610571. 
  33. ^ Goble, C. A.; Stevens, R.; Ng, G.; Bechhofer, S.; Paton, N. W.; Baker, P. G.; Peim, M.; Brass, A. (2001). "Transparent access to multiple bioinformatics information sources". IBM Systems Journal 40 (2): 532–551. doi:10.1147/sj.402.0532.