Biofouling or biological fouling is the accumulation of microorganisms, plants, algae, or animals on wetted surfaces. Such accumulation is referred to as epibiosis when the host surface is another organism and the relationship is not parasitic.
The variety among biofouling organisms is highly diverse and extends far beyond attachment of barnacles and seaweeds. According to some estimates, over 1700 species comprising over 4000 organisms are responsible for biofouling. Biofouling is divided into microfouling — biofilm formation and bacterial adhesion — and macrofouling — attachment of larger organisms. Due to the distinct chemistry and biology that determine what prevents them from settling, organisms are also classified as hard or soft fouling types. Calcareous (hard) fouling organisms include barnacles, encrusting bryozoans, mollusks, polychaete and other tube worms, and zebra mussels. Examples of non-calcareous (soft) fouling organisms are seaweed, hydroids, algae and biofilm "slime". Together, these organisms form a fouling community.
Marine fouling is typically described as following four stages of ecosystem development. The chemistry of biofilm formation describes the initial steps prior to colonization. Within the first minute the van der Waals interaction causes the submerged surface to be covered with a conditioning film of organic polymers. In the next 24 hours, this layer allows the process of bacterial adhesion to occur, with both diatoms and bacteria (e.g. vibrio alginolyticus, pseudomonas putrefaciens) attaching, initiating the formation of a biofilm. By the end of the first week, the rich nutrients and ease of attachment into the biofilm allow secondary colonizers of spores of macroalgae (e.g. enteromorpha intestinalis, ulothrix) and protozoans (e.g. vorticella, Zoothamnium sp.) have attached themselves. Within 2 to 3 weeks, the tertiary colonizers- the macrofoulers have attached including tunicates, mollusks and sessile Cnidarians.
Governments and industry spend more than US$ 5.7 billion annually to prevent and control marine biofouling.
Biofouling occurs everywhere but is most significant economically to the shipping industries, since high levels of fouling on a ship's hull significantly increases drag, reducing the overall hydrodynamic performance of the vessel and increases the fuel consumption. Biofouling is also found in almost all circumstances where water based liquids are in contact with other materials. Industrially important impacts are on the maintenance of mariculture, membrane systems (e.g., membrane bioreactors and reverse osmosis spiral wound membranes) and cooling water cycles of large industrial equipment and power stations. Biofouling can occur in oil pipelines carrying oils with entrained water especially those carrying used oils, cutting oils, oils rendered water-soluble through emulsification, and/or hydraulic oils. Other mechanisms impacted by biofouling include microelectrochemical drug delivery devices, papermaking and pulp industry machines, underwater instruments and fire protection system piping and sprinkler system nozzles. In groundwater wells, biofouling build-up can limit recovery flow rates, as is the case in the exterior and interior of ocean-laying pipes where fouling is often removed with a tube cleaning process. Besides interfering with mechanisms, biofouling also occurs on the surfaces of living marine organisms, when it is known as epibiosis.
Historically, the focus of attention has been the severe impact due to biofouling on the speed of marine vessels. In some instances the hull structure and propulsion systems can become damaged. Over time, the accumulation of biofoulers on hulls increases both the hydrodynamic volume of a vessel and the frictional effects leading to increased drag of up to 60% The additional drag can decrease speeds up to 10%, which can require up to a 40% increase in fuel to compensate. With fuel typically comprising up to half of marine transport costs, biofouling methods are estimated to cost the shipping industry around $60 billion per year. Increased fuel use due to biofouling contributes to adverse environmental effects and is predicted to increase emissions of carbon dioxide and sulfur dioxide between 38 and 72 percent by 2020.
Anti-fouling is the process of removing or preventing these accumulations from forming. In industrial processes, bio-dispersants can be used to control biofouling. In less controlled environments, organisms are killed or repelled with coatings using biocides, thermal treatments or pulses of energy. Nontoxic mechanical strategies that prevent organisms from attaching include choosing a material or coating with a slippery surface, creation of an ultra-low fouling surface with the use of zwitterions, or creation of nanoscale surface topologies similar to the skin of sharks and dolphins which only offer poor anchor points.
Biocides are chemical substances that can deter or kill the microorganisms responsible for biofouling. Biocides are incorporated into an anti-fouling surface coating, typically physical adsorption or through chemical modification of the surface. Biofouling occurs on surfaces after formation of a biofilm. The biofilm creates a surface onto which successively larger microorganisms can attach. In marine environments this usually concludes with barnacle attachment. The biocides often target the microorganisms which create the initial biofilm, typically bacteria. Once dead, they are unable to spread and can detach. Other biocides are toxic to larger organisms in biofouling, such as the fungi and algae. The most commonly used biocide, and anti-fouling agent, is the tributyltin moiety (TBT). It is toxic to both microorganisms and larger aquatic organisms. It is estimated that TBT derived anti-fouling coatings cover 70% of the world's vessels.
The prevalence of TBT and other tin based anti-fouling coatings on marine vessels is a current environmental problem. TBT has been shown to cause harm to many marine organisms, specifically oysters and mollusks. Extremely low concentrations of tributyltin moiety (TBT) causes defective shell growth in the oyster Crassostrea gigas (at a concentration of 20 ng/l) and development of male characteristics in female genitalia in the dog whelk Nucella lapillus (where gonocharacteristic change is initiated at 1 ng/l).
An alternative to TBT are chlorine based anti-fouling solutions. These types of anti-fouling solutions generally involve a device attached to the end of the probe which bathes the sensors in a chlorine solution, then flushes the device and reintroduces new seawater. One such example would be Green Eyes's ProbeGuard which can be used to protect sensors during long-term submerged deployments.
The international maritime community has recognized this problem and there is planned phase out of tin based coatings, including a ban on newly built vessels.[clarification needed] This phase out of toxic biocides in marine coatings is a severe problem for the shipping industry; it presents a major challenge for the producers of coatings to develop alternative technologies. Safer methods of biofouling control are actively researched. Copper compounds have successfully been used in paints and continue to be used as metal sheeting (for example Muntz metal which was specifically made for this purpose), though there is still debate as to the safety of copper.
Non-toxic anti-sticking coatings prevent attachment of microorganisms thus negating the use of biocides. These coatings are usually based on organic polymers, which allow researchers to add additional functions to such as antimicrobial activity..
There are two classes of non-toxic anti-fouling coatings. The most common class relies on low friction and low surface energies. This results in hydrophobic surfaces. These coatings create a smooth surface which can prevent attachment of larger microorganisms. For example, fluoropolymers and silicone coatings are commonly used. These coatings are ecologically inert but have problems with mechanical strength and long term stability. Specifically, after days biofilms (slime) can coat the surfaces which buries the chemical activity and allows microorganisms to attach. The current standard for these coatings is polydimethylsiloxane, or PDMS. PDMS consists of a non-polar backbone made of repeating units of silicon and oxygen atoms. The non-polarity of PDMS allows for biomolecules to readily adsorb to its surface in order to lower interfacial energy. However, PDMS also has a low modulus of elasticity that allows for the release of fouling organisms at speeds of greater than 20 knots. The dependence of effectiveness on vessel speed prevents use of PDMS on slow moving ships or those that spend significant amounts of time in port.
The second class of non-toxic anti-fouling coatings are hydrophilic coatings. They rely on high amounts of hydration in order to increase the energetic penalty of removing water for proteins and microorganisms to attach. The most common example of these coatings are based on highly hydrated zwitterions, such as glycine betaine and sulfobetaine. These coatings are also low friction but are considered by some to be superior to hydrophobic surfaces because they prevent bacteria attachment, preventing biofilm formation. These coatings are not yet commercially available and are being designed as part of a larger effort by the Office of Naval Research to develop environmentally safe biomimetic ship coatings.
Pulsed laser irradiation is commonly used against diatoms. Plasma pulse technology has been shown to be effective against zebra mussels and works by stunning or killing the organisms with microsecond duration energizing of the water with high voltage electricity.
There are several companies that offer alternatives to paint-based antifouling, using ultrasonic transducers mounted in or around the hull of small to medium sized boats. Research undertaken has shown these systems can help reduce fouling, by initiating bursts of ultrasonic waves through the hull medium to the surrounding water, killing or denaturing the algae and other micro-organisms that form the beginning of the fouling sequence. The systems cannot work on wooden-hulled boats, or boats with a soft cored composite material, such as wood or foam. The systems have been loosely based on technology proven to control algae blooms. 
Similarly, another method shown to be effective against algae buildups bounced brief high energy acoustic pulses down pipes.
Regimens to periodically use heat to treat exchanger equipment and pipes have been successfully used to remove mussels from power plant cooling systems using water at 105°F for 30 minutes.
Biofouling, especially of ships, has been a problem for as long as mankind has been sailing the oceans. The earliest written mention of fouling was by Plutarch who recorded this explanation of its impact on ship speed: "when weeds, ooze, and filth stick upon its sides, the stroke of the ship is more obtuse and weak; and the water, coming upon this clammy matter, doth not so easily part from it; and this is the reason why they usually calk their ships."  Techniques of using pitch and copper plating as anti-fouling techniques were attributed to ancient seafaring nations such as the Carthaginians and Phoenicians (1500- 300BC). Wax, tar and asphaltum have also been used since early times. In 412 B.C., there a record in Aramaic of a ship's bottom being coated with a mixture of arsenic, oil and sulphur. In Deipnosophistae, Athenaeus described the anti-fouling efforts taken in the construction of the great ship of Hieron of Syracuse (died 467 BC). Before the 18th century various graving and paying techniques were used to try to prevent fouling using three main substances: White stuff, which was a mixture of train oil, rosin and sulfur; Black stuff, a mixture of tar and pitch; and Brown stuff, which was simply sulfur added to Black stuff. In many of these cases, the purpose of these treatments is ambiguous. There is dispute whether many of these treatments were actual anti-fouling techniques, or whether, when they were used in conjunction with lead and wood sheathing, they were simply intended to combat wood-boring shipworms.
In 1708, Charles Perry suggested copper sheathing explicitly as an anti-fouling device but the first experiments were not made until 1761 with the sheathing of HMS Alarm, after which the bottoms and sides of several ships' keels and false keels were sheathed with copper plates.
The copper performed very well in protecting the hull from invasion by worm, and in preventing the growth of weed, for when in contact with water, the copper produced a poisonous film, composed mainly of oxychloride, that deterred these marine creatures. Furthermore, as this film was slightly soluble it gradually washed away, leaving no way for marine life to attach themselves to the ship. From about 1770, the Royal Navy set about coppering the bottoms of the entire fleet and continued to the end of the use of wooden hulled ships. The process was so successful that the term copper-bottomed came to mean something that was highly dependable or risk free.
With the rise of iron hulled ships in the 19th century, copper sheathing could no longer be used due to its galvanic corrosive interaction with iron. Anti fouling paints were experimented with, and in 1860, the first practical paint to gain widespread use was introduced in Liverpool and was referred to as "McIness" hot plastic paint. These treatments had a short service life, were expensive, and relatively ineffective by modern standards. By the mid twentieth century, copper oxide based paints could keep a ship out of drydock for as much as 18 months, or as little as 12 in tropical waters. The reason for the short service life was due to rapid leeching of the toxicant, and chemical conversion into less toxic salts which accumulated as a crust which would inhibit further leaching of active cuprous oxide from the layer under the crust. In the 1960s there was a breakthrough with self polishing paints which used seawater's ability to hydrolize the paint's copolymer bond and release the stored toxin at a slow, controlled rate. The new paints employed organotin chemistry ("tin-based") biotoxins such as tributyltin oxide (TBT) and were shown to be effective for up to 4 years. The discovery that these biotoxins have severe impact on mariculture, with biological effects to marine life at a concentration of 1 nanogram per liter) led to their worldwide ban by the International Maritime Organization in October 2001. TBT in particular has been described as the most toxic pollutant ever deliberately released in the ocean.
As an alternative to organotin toxins, there has been renewed interest in copper as the active agent in ablative or self polishing paints, with reported service lives up to 5 years. Modern adhesives permits application of copper alloys to steel hulls without creating galvanic corrosion. However copper alone is not impervious to diatom and algae fouling. Additionally, some studies indicate that copper may also present an unacceptable environmental impact.
Modern empirical study of biofouling got its start in the early 19th century when Humphry Davy performed experiments which linked the effectiveness of copper to the rate at which it could go into solution. Insights into the stages of formation leaped forward in the 1930s when the microbiologist Claude ZoBell defined the sequence of events initiating the fouling of submerged surfaces. ZoBell discovered that the attachment of organisms must first be preceded by the adsorption of organic compounds now referred to as extracellular polymeric substances.
One trend of research is the study of the relationship between wettability and anti-fouling effectiveness. Another trend is the study of living organisms as the inspiration for new functional materials. An example of biomimetic antifouling research was conducted at the University of Florida into how marine animals like dolphins and sharks are able to effectively deter biofouling on their skin. Researchers examined the nanoscale structure of sharks and designed an anti fouling surface known commercially as Sharklet. Further study suggests that the nanoscale topologies function not only due to the reduction of sites for macrofoulers to attach, but due to the same thermodynamic barrier that any surface with low wettability presents. Materials research into superior anti fouling surfaces for fluidized bed reactors suggest that low wettability plastics such as Polyvinyl chloride ("PVC"), high-density polyethylene and polymethylmethacrylate ("plexiglas") demonstrate a high correlation between their resistance to bacterial adhesion and their hydrophobicity.
Study of the biotoxins used by organisms has revealed several effective compounds, some of which are more powerful than synthetic compounds. Bufalin, a Bufotoxin, was found to be over 100 times more potent than TBT, and over 6000 times more effective in anti-settlement activity against barnacles.
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