Arc Two starts off with Phoebe Halliwell dealing with Cal Greene and realizing that it has been nearly 10 years since she had that premonition. Miyka, her assistant, comes into her office and they talk about her boyfriend Cal. Phoebe, not trusting him, goes on a double date to see if her Empathy power can sense anything good or evil off of him. When she doesn't get anything, she goes researching. Realizing that Cal hasn't been in the paper in almost a year, she goes to Elise. Elise says that Cal isn't in the paper because a woman had come to hear all beaten up saying that Cal did it. The young lady went to the police and they filed charges; she later wanted out, but the paper was going to print the story. Cal Greene threatened them, not just with lawsuits but with violence. Phoebe went to Miyka to protect her, but when Miyka answers the door, she's crying because she had broken up with Cal. Back at the office all three sisters are there as Phoebe and Miyka set up for the Web show. Phoebe then has a premonition of the woman that Cal killed not being Miyka, but Elise. They rush over to Elise's office, finding Cal walking out and Elise beaten. In the end Phoebe tells Elise about their powers and Paige uses her glamouring powers to make it look like Cal beat Elise on live camera.
In the next issue, Piper finds out that Melinda is half whitelighter. When Paige orbs Leo up to the elders to find out why this is, they find that many things have changed. All of the old elders are gone and new ones are put in, including Kyle, because the old elders played with people's lives too much. Kyle explains to Leo and Paige that the old ones wanted the Charmed Ones' children to be just as powerful as them. They wanted to create the new power of three. As Piper and Phoebe set up Piper's new restaurant, Melinda begins to orb many various objects, including knives. While all of this is occurring, Neena and her new darklighter friend, soon to be named Reenek, seek the underworld to destroy a Vampire Queen. Back in Elder Land, Kyle offers Leo his wings back, but Leo declines, saying he wants to teach magic school. At the restaurant Piper figures out that the reason Melinda is acting out is because she still wants her pacifier.
Almost a decade ago Phoebe Halliwell saw a future in which she was publicly burned at the stake for killing a mortal that murdered her friend. Now as the time approaches for her premonition to play itself out, what can she do, if anything, to stop it? Phoebe questions whether the events are destined to play out the way she saw them or if enough has changed to save both her friend's life as well as her own. Released February 16, 2011
Piper is distraught when she finds that her baby daughter has the same orbing power as her part-Whitelighter aunt Paige and worries that it could put her children at risk again as it did when Wyatt was born. Leo decides to make a visit to the Elders for an explanation and is given an intriguing offer but one that would seriously affect his future with Piper. Meanwhile Neena has teamed up with a Darklighter as the two set forth on a Whitelighter killing spree in order to absorb their abilities. Now that she has taken control of the Underworld, Neena has set her sights on the Upper Regions. Released March 2, 2011
An Innocent homeless teen in San Francisco falls victim to a stray arrow during the Darklighter's attack on a Whitelighter. The pregnant teen is dead, but Paige manages to save the girl's baby by orbing the child out of the body immediately. Neena finally reveals herself to the Charmed Ones while taking on an Elder directly on the streets of San Francisco. During the battle, Neena sends Piper into the void that she sent the Angel of Destiny in Issue 1. Phoebe and Paige want to stay to fight the stranger and rescue their sister, but Leo forces them to flee.Released March 16, 2011
Leo must reveal an ancient secret to The Charmed Ones about the very source of their craft and the true origins of the magic they possess if they have any chance of defeating their latest threat. Released May 25, 2011
With the Power of Three torn asunder, Phoebe and Paige work to bring their family back together. But a tragically ill-advised plan pulls The Charmed Ones further apart and could leave one of the sisters lost forever. Released June 8, 2011
A decision is made that could affect The Power of Three and irrevocably change The Charmed Ones forever. Humanity hangs in the balance in the coming showdown between good and evil. Released June 22, 2011
The Charmed Ones and Leo face down impossible challenges in a battle to reclaim the Heavens, conquer the Underworld, and save the Earth. It's a fight that's been brewing since long before the prophecy of The Charmed Ones was foreseen and building since the first issue of the comic book. Released July 27, 2011