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FMS may stand for:
- Fixed Mobile Substitution
- Finnish Missionary Society
- Foreign military sales, a term in arms trade
- Final Multiple Score, the calculation used to advance enlisted sailors in the United States Navy.
- Fisichella Motor Sport, motor racing team owned by F1 driver Giancarlo Fisichella.
- Federal Medical Station, a temporary medical facility used to meet emergency or disaster health and medical surge requirements for beds and medical/nursing care.
- Federal Magistrates Service, the former name of the Federal Magistrates' Court of Australia
- Federated Malay States (1895–1946) (Negeri-negeri Melayu Bersekutu), historical British protectorate in then British Malaya
- Financial Management Service, a bureau of the U.S. Treasury Department
- Fiji Meteorological Service, the central weather office of Fiji
- Federal Migration service of Russia (Федеральная миграционная служба России)
- Fleet Management System
- Flexible Modeling System, developed at the Geophysical Fluid Dynamics Laboratory
- Flight management system
- Flexible manufacturing system, production system using computer-controlled machines that can adapt to various versions of the same operation
- Flexible Monitoring System, as in Pandora FMS
- Fuel management systems
- Fratres Maristae a Scolis, post-nominal letters for the catholic religious order of the Marist Brothers
- Faculty of Management Studies, New Delhi, India - Comes under Prestigious Delhi University (DU)
- Faculty of Management Studies, BHU,Varanasi,India- Comes under prestigious Banaras Hindu University (BHU)
- Florida Military School
- Faculty of Management Studies, Baroda (Vadodara), Gujarat, India
- Fuchs Mizrachi School, Ohio, USA
- Fugett Middle School, a middle school in West Chester, Pennsylvania.
- Frontier Middle School in the Frontier Central School District of Hamburg, New York
- Francisco Middle School
- Fountain Middle School [Fountain, Colorado]
- Fibromyalgia Syndrome
- Family Medicine Specialist
- Fulminant meningococcal septicemia, the rapidly progressive form of meningococcal infection
- File Management System, part of Atari DOS
- FORTRAN Monitor System, a batch processing operating system
- FMSLogo, a free Microsoft Windows based Logo (formerly MSWLogo)
- Flash Media Server
- FMS attack
- Field bus Message Specification
- Freenet Message System
- Fiber Management System
Simulation and Training
- Flying Model Simulator, a free personal computer flight simulator application for radio-controlled aircraft
- Flight Motion Simulator, used to simulate flight motion for missile seekers
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