Fragmentation or clonal fragmentation in multicellular or colonial organisms is a form of asexual reproduction or cloning in which an organism is split into fragments. Each of these fragments develop into mature, fully grown individuals that are clones of the original organism.
The splitting may or may not be "intentional"- it may occur due to man-made or natural damage by the environment or predators. This kind of organism may develop specific organs or zones that may be shed or easily broken off. If the splitting occurs without the prior preparation of the organism, both fragments must be able to regenerate the complete organism for it to function as reproduction.
Fragmentation as a method of reproduction is seen in many organisms such as filamentous cyanobacteria, molds, lichens, many plants, and animals like sponges, acoel flatworms, some annelid worms, and sea stars.
Fragmentation in various organisms
Moulds, yeast, and mushrooms, all of which are part of the Fungi kingdom, produce tiny filaments called hyphae. These hyphae obtain food and nutrients from the body of other organisms to grow and fertilize. Then a piece of hyphae breaks off and grows into a new individual and the cycle continues.
Many lichens produce specialised structures that can easily break away and disperse. These structures contain both the hyphae of the mycobiont and the algae(phycobiont) (see soredia and isidia. Larger fragments of the thallus may break away when the lichen dries or due to mechanical disturbances(see the section on reproduction in lichens).
Fragmentation is a very common type of vegetative reproduction in plants. Many trees, shrubs, nonwoody perennials, and ferns form clonal colonies by producing new rooted shoots by rhizomes or stolons, which increases the diameter of the colony. If a rooted shoot becomes detached from the colony,then fragmentation has occurred. There are several other mechanisms of natural fragmentation in plants.
- Production of specilized reproductive structures: A few plants produce adventitious plantlets on their leaves, which drop off and form independent plants, e.g. Tolmiea menziesii and Kalanchoe daigremontiana. Others produce organs like bulbils and turions.
- Easily lost parts that have high potential to grow into a complete plant: Some woody plants like the willow naturally shed twigs. This is termed cladoptosis. The twigs may form roots in a suitable environment to establish a new plant. River currents often tear off branch fragments from certain cottonwood species growing on riverbanks. Fragments reaching suitable environments can root and establish new plants. Some cacti and other plants have jointed stems. When a stem segment, called a pad, falls off, it can root and form a new plant. Leaves of some plants readily root when they fall off, e.g. Sedum and Echeveria.
- Fragmentation is observed in nonvascular plants as well, for example, in liverworts and mosses. Small pieces of moss "stems" or "leaves" are often scattered by wind, water or animals. If a moss fragment reaches a suitable environment, it can establish a new plant.  They also produce gemma that are easily broken off and distributed.
When the splitting occurs due to specific developmental changes, the terms architomy, paratomy and budding are used. In architomy the animal splits at a particular point and the two fragments regenerate the missing organs and tissues. The splitting is not preceded by the development of the tissues to be lost. Prior to splitting, the animal may develop furrows at the zone of splitting. The headless fragment has to regenerate a complete head.
In paratomy, the split occurs perpendicular to the antero-posterior axis and the split is preceded by the "pregeneration" of the anterior structures in the posterior portion. The two organisms have their body axis aligned i.e. they develop in a head to tail fashion. Budding can be considered to be similar to paratomy except that the body axes need not be aligned: the new head may grow toward the side or even point backward (e.g. Convolutriloba retrogemma an acoel flat worm).
Many types of coral colonies can increase in number by fragmentation that occurs naturally or artificially. Within the reef aquarium hobby, enthusiasts regularly fragment corals for a multitude of purposes including shape control; selling to, trading with, or sharing with others; regrowth experiments; and minimizing damage to natural coral reefs. Both hard and soft corals can be fragmented, with the level of success depending on the skill of the aquarist, method used, tolerance of the specific species, and conditions of care. Genera that have shown to be highly tolerant of fragmentation include Acropora, Montipora, Pocillopora, Euphyllia, and Caulastrea among many others.
In echinoderms, the process is usually known as fissiparity (a term also used infrequently for fission in general). Some species can intentionally reproduce in this manner through autotomy. This method is more common during the larval stages.
Disadvantage of this process of reproduction
As this process is a form of asexual reproduction, it does not produce genetic diversity in the offspring. Therefore, these are more vulnerable to changing environments.
- Rood, S.B., Kalischuk, M.L., and Braatne, J.H. 2003. Branch propagation, not cladoptosis, permits dispersive, clonal reproduction of riparian cottonwoods. Forest Ecology and Management 186: 227–242. 
- Åkesson, Bertil; Robert Gschwentner, Jan Hendelberg, Peter Ladurner, Johann Müller, Reinhard Rieger (2001-12-01). "Fission in Convolutriloba longifissura: asexual reproduction in acoelous turbellarians revisited". Acta Zoologica 82 (3): 231–239. doi:10.1046/j.1463-6395.2001.00084.x. ISSN 1463-6395. Retrieved 2011-07-13.
- Egger, Bernhard (2008-12). "Regeneration: rewarding, but potentially risky". Birth Defects Research. Part C, Embryo Today: Reviews 84 (4): 257–264. doi:10.1002/bdrc.20135. ISSN 1542-9768. Retrieved 2011-07-13.
- Lirman, Diego (2000-08-23). "Fragmentation in the branching coral Acropora palmata (Lamarck): growth, survivorship, and reproduction of colonies and fragments". Journal of Experimental Marine Biology and Ecology 251 (1): 41–57. ISSN 0022-0981. Retrieved 2011-07-13.
- Helen Nilsson Sköld, Matthias Obst, Mattias Sköld, & Bertil Åkesson (2009). "Stem Cells in Asexual Reproduction of Marine Invertebrates". In Baruch Rinkevich, Valeria Matranga. Stem Cells in Marine Organisms. Springer. p. 125. ISBN 978-90-481-2766-5.