The World Wildlife Fund (WWF) divides Indomalaya into three bioregions, which it defines as "geographic clusters of ecoregions that may span several habitat types, but have strong biogeographic affinities, particularly at taxonomic levels higher than the species level (genus, family)."
The Indian Subcontinent bioregion covers most of India, Bangladesh, Nepal, Pakistan, Bhutan, and Sri Lanka. The Hindu Kush, Karakoram, Himalaya, and Patkai ranges bound the bioregion on the northwest, north, and northeast; these ranges were formed by the collision of the northward-drifting Indian subcontinent with Asia beginning 45 million years ago. The Hindu Kush, Karakoram, and Himalaya are a major biogeographic boundary between the subtropical and tropical flora and fauna of the Indian subcontinent and the temperate-climate Palearctic ecozone.
Malesia is a botanical province which straddles the boundary between Indomalaya and Australasia. It includes the Malay Peninsula and the western Indonesian islands (known as Sundaland), the Philippines, the eastern Indonesian islands, and New Guinea. While the Malesia has much in common botanically, the portions east and west of the Wallace Line differ greatly in land animal species; Sundaland shares its fauna with mainland Asia, while terrestrial fauna on the islands east of the Wallace line are derived at least in part from species of Australian origin, such as marsupial mammals and ratite birds.
The flora of Indomalaya blends elements from the ancient supercontinents of Laurasia and Gondwana. Gondwanian elements were first introduced by India, which detached from Gondwana approximately 90 MYA, carrying its Gondwana-derived flora and fauna northward, which included cichlid fish and the flowering plantfamiliesCrypteroniaceae and possibly Dipterocarpaceae. India collided with Asia 30-45 MYA, and exchanged species. Later, as Australia-New Guinea drifted north, the collision of the Australian and Asian plates pushed up the islands of Wallacea, which were separated from one another by narrow straits, allowing a botanic exchange between Indomalaya and Australasia. Asian rainforest flora, including the dipterocarps, island-hopped across Wallacea to New Guinea, and several Gondwanian plant families, including podocarps and araucarias, moved westward from Australia-New Guinea into western Malesia and Southeast Asia.