Integral membrane protein
An integral membrane protein (IMP) is a protein molecule (or assembly of proteins) that is permanently attached to the biological membrane. Proteins that cross the membrane are surrounded by "annular" lipids, which are defined as lipids that are in direct contact with a membrane protein. Such proteins can be separated from the biological membranes only using detergents, nonpolar solvents, or sometimes denaturing agents.
Three-dimensional structures of only ~160 different integral membrane proteins are currently determined at atomic resolution by X-ray crystallography or nuclear magnetic resonance spectroscopy due to the difficulties with extraction and crystallization. In addition, structures of many water-soluble domains of IMPs are available in the Protein Data Bank. Their membrane-anchoring α-helices have been removed to facilitate the extraction and crystallization. Search integral membrane proteins in the PDB (based on gene ontology classification)
IMPs can be divided into two groups:
Integral Polytopic Protein
The most common type of IMP is the transmembrane protein (TM), which spans the entire biological membrane. Single-pass membrane proteins cross the membrane only once, while multi-pass membrane proteins weave in and out, crossing several times. Single pass TM proteins can be categorized as Type I, which are positioned such that their carboxy-terminus is towards the cytosol, or Type II, which have their amino-terminus towards the cytosol. Type III proteins have multiple transmembrane domains in a single polypeptide, while type IV consists of several different polypeptides assembled together in a channel through the membrane. Type V proteins are anchored to the lipid bilayer through covalently linked lipids. Finally Type VI proteins have both a transmembrane domains and lipid anchors. 
Integral Monotopic Proteins
Integral monotopic proteins, are associated to the membrane from one side but do not span the lipid bilayer completely.
Determination of Protein Structure
The Protein Structure Initiative (PSI), funded by the U.S. National Institute of General Medical Sciences (NIGMS), has among its aim to determine three-dimensional protein structures and to develop techniques for use in structural biology, including for membrane proteins. Homology modeling can be used to construct an atomic-resolution model of the "target" integral protein from its amino acid sequence and an experimental three-dimensional structure of a related homologous protein. This procedure has been extensively used for ligand-G protein-coupled receptors (GPCR) and their complexes.
IMPs include transporters, linkers, channels, receptors, enzymes, structural membrane-anchoring domains, proteins involved in accumulation and transduction of energy, and proteins responsible for cell adhesion. Classification of transporters can be found in Transporter Classification database.
Examples of integral membrane proteins:
- Insulin receptor
- Some types of cell adhesion proteins or cell adhesion molecules (CAMs) such as Integrins, Cadherins, NCAMs, or Selectins.
- Some types of receptor proteins
- Band 3
- Membrane proteins
- Transmembrane proteins
- Peripheral membrane proteins
- Orientations of Proteins in Membranes database
- Hydrophilicity plots
- Inner nuclear membrane proteins
- Wallin E, von Heijne G (1998). "Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms". Protein Science 7 (4): 1029–38. doi:10.1002/pro.5560070420. PMC 2143985. PMID 9568909.
- Steven R. Goodman (2008). Medical cell biology. Academic Press. pp. 37–. ISBN 978-0-12-370458-0. Retrieved 24 November 2010.
- Nelson, D. L., & Cox, M. M. (2008). Principles of Biochemistry (5th ed., p. 377). New York, NY: W.H. Freeman and Company.
- Fruchart-Marquer C, Fruchart-Gaillard C, Letellier G, Marcon E, Mourier G, Zinn-Justin S, Ménez A, Servent D, Gilquin B. (September 2011). "Structural model of ligand-G protein-coupled receptor (GPCR) complex based on experimental double mutant cycle data: MT7 snake toxin bound to dimeric hM1 muscarinic receptor.". J Biol Chem. 286 (36): 31661–75. doi:10.1074/jbc.M111.261404. PMID 21685390.
- Saier MH, Yen MR, Noto K, Tamang DG, Elkan C (January 2009). "The Transporter Classification Database: recent advances". Nucleic Acids Res. 37 (Database issue): D274–8. doi:10.1093/nar/gkn862. PMC 2686586. PMID 19022853.
- The Human Membrane Proteome - A comprehensive article covering the transmembrane protein component of the human proteome
- Membrane PDB Database of 3D structures of integral membrane proteins and hydrophobic peptides with emphasis on crystallization conditions
- Membrane proteins of known 3D structure from Stephen White laboratory