List of sequenced archaeal genomes

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This list of sequenced archaeal genomes contains all the archaea known to have publicly available complete genome sequences that have been assembled, annotated and deposited in public databases. Methanococcus jannaschii was the first archaeon whose genome was sequenced, in 1996.[1]

Currently in this list there are 39 genomes belonging to Crenarchaeota species, 105 belonging to the Euryarchaeota, 1 genome belonging to Korarchaeota and to the Nanoarchaeota, 3 belonging to the Thaumarchaeota and 1 genome belonging to an unclassified Archaea, totalling 150 Archaeal genomes.

Crenarchaeota[edit]

Acidilobales[edit]

Species Strain Base Pairs Genes Reference GenBank identifier Publication year
Acidilobus saccharovorans 345-15 1,496,000 1,547 [2] CP001742 2010

Desulforococcales[edit]

Species Strain Base Pairs Genes Reference GenBank identifier Publication year
Aeropyrum pernix K1 1,669,695 2,694 [3] NC_000854 (NCBI Reference Sequence) 1999
Desulfurococcus kamchatkensis 1221n 1,365,000 1,521 [4] CP001140 2009
Hyperthermus butylicus DSM 5456 1,667,000 1,669 [5] CP000493 2007
Ignicoccus hospitalis KIN4/I, DSM 18386 1,297,000 1,496 [6] CP000816 2008
Ignisphaera aggregans AQ1.S1, DSM 17230 1,875,000 2,042 [7] CP002098 2010
Pyrolobus fumarii 1A, DSM 11204 1,843,000 2,038 [8] CP002838 2011
Staphylothermus hellenicus P8, DSM 12710 1,580,000 1,716 [9] CP002051 2011
Staphylothermus marinus F1, DSM 3639 1,570,000 1,659 [10] CP000575 2011
Thermosphaera aggregans M11TL, DSM 11486 1,316,000 1,457 [11] CP001939 2010

Sulfolobales[edit]

Species Strain Base Pairs Genes Reference GenBank identifier Publication year
Acidianus hospitalis W1 2,137,000 2,424 [12] CP002535 2011
Metallosphaera cuprina Ar-4 1,840,000 2,077 [13] CP002656 2011
Metallosphaera sedula DSM 5348 2,191,000 2,347 [14] CP000682 2008
Sulfolobus acidocaldarius DSM 639 2,225,959 2,223 [15] CP000077 2005
Sulfolobus islandicus HVE10/4 2,655,000 [16] CP002426 2011
Sulfolobus islandicus L.D.8.5 2,722,000 2,996 [17] Chromosome CP001731

Plasmid pLD8501 CP001732

2009
Sulfolobus islandicus L.S.2.15 2,736,000 3,068 [17] CP001399 2009
Sulfolobus islandicus M.14.25 2,608,000 2,900 [17] CP001400 2009
Sulfolobus islandicus M.16.27 2,692,000 2,956 [17] CP001401 2009
Sulfolobus islandicus M.16.4 2,586,000 2,869 [17] CP001402 2009
Sulfolobus islandicus REY15A 2,522,000 [16] CP002425 2011
Sulfolobus islandicus Y.G.57.14 2,702,000 3,079 [17] CP001403 2009
Sulfolobus islandicus Y.N.15.51 2,812,000 3,318 [17] Chromosome CP001404

Plasmid pYN01 CP001405

2009
Sulfolobus islandicus LAL14/1 2,465,177 2,601 [18] CP003928 2013
Sulfolobus solfataricus P2 2,992,245 2,995 [19] AE006641 2001
Sulfolobus solfataricus 98/2 2,668,000 2,728 DOE Joint Genome Institute CP001800 2009
Sulfolobus tokodaii 7 2,694,765 2,826 [20] BA000023 2001

Thermoproteales[edit]

Species Strain Base Pairs Genes Reference GenBank identifier Publication year
Caldivirga maquilingensis IC-167 2,077,000 2,011 DOE Joint Genome Institute CP000852 2007
Pyrobaculum aerophilum IM2 2,222,430 2,605 [21] AE009441 2002
Pyrobaculum arsenaticum PZ6, DSM 13514 2,121,000 2,410 DOE Joint Genome Institute CP000660 2007
Pyrobaculum calidifontis JCM 11548 2,009,000 2,213 DOE Joint Genome Institute CP000561 2007
Pyrobaculum islandicum DSM 4184 1,826,000 2,063 DOE Joint Genome Institute CP000504 2006
Pyrobaculum sp. 1860 Unpublished[22] CP003098 2011
Thermofilum pendens Hrk 5 1,781,000 1,930 [23] Chromosome CP000505

Plasmid pTPEN01 CP000506

2008
Thermoproteus neutrophilus V24Sta 1,769,000 2,053 DOE Joint Genome Institute CP001014 2008
Thermoproteus tenax Kra1 1,841,000 2,100 [24] FN869859 2011
Thermoproteus uzoniensis 768-20 1,936,000 2,229 [25] CP002590 2011
Vulcanisaeta distributa DSM 14429 2,374,000 2,592 [26] CP002100 2010
Vulcanisaeta moutnovskia 768-28 2,298,000 2,393 [27] CP002529 2011

Euryarchaeota[edit]

Archaeoglobi[edit]

Species Strain Base Pairs Genes Reference GenBank identifier Publication year
Archaeoglobus fulgidus DSM4304 2,178,400 2,407 [28] AE000782 1997
Archaeoglobus veneficus SNP6, DSM 11195 1,901,000 2,194 DOE Joint Genome Institute CP002588 2011
Archaeoglobus profundus Av18, DSM 5631 1,563,000 1,911 [29] Chromosome CP001857

Plasmid pArcpr01 CP001858

2010
Ferroglobus placidus AEDII12DO, DSM 10642 2,196,000 2,622 [30] CP001899 2011

Halobacteria[edit]

Species Strain Base Pairs Genes Reference GenBank identifier Publication year
Halalkalicoccus jeotgali B3, DSM 18796 3,690,000 3925 [31] Chromosome I CP002062

Plasmid 1 CP002063
Plasmid 2 CP002064
Plasmid 3 CP002065
Plasmid 4 CP002066
Plasmid 5 CP002067
Plasmid 6 CP002068

2010
Haloarcula hispanica CGMCC 1.2049 3,484,000 3,561 [32] Chromosome I CP002921

Chromosome II CP002922
Plasmid pHH400 CP002923

2011
Haloarcula marismortui ATCC 43049 3,131,724 3,131 [33] Chromosome I AY596297

Chromosome II AY596298
Plasmid pNG100 AY596290
Plasmid pNG200 AY596291
Plasmid pNG300 AY596292
Plasmid pNG400 AY596293
Plasmid pNG500 AY596294
Plasmid pNG600 AY596295
Plasmid pNG700 AY596296

2004
Halobacterium salinarum R1, DSM 671 2,000,000 2,801 [34] Chromosome NC_010364

Plasmid PHS1 NC_010366
Plasmid PHS2 NC_010369
Plasmid PHS3 NC_010368
Plasmid PHS4 NC_010367

2008
Halobacterium species NRC-1 2,014,239 2,058 [35] Chromosome NC_002607

Plasmid pNRC100 NC_002607
Plasmid pNRC200 NC_002608

2000
Halobiforma lacisalsi AJ5, JCM 12983 4,320,000 4,682 [36] AGFZ00000000 2011
Haloferax volcanii DS2 [37] Chromosome CP001956

Plasmid pHV1 CP001957
Plasmid pHV2 CP001954
Plasmid pHV3 CP001953
Plasmid pHV4 CP001955

2010
Halogeometricum borinquense PR3, DSM 11551 3,920,000 4,059 [38] Chromosome CP001690

Plasmid pHBOR01 CP001691
Plasmid pHBOR02 CP001692
Plasmid pHBOR03 CP001693
Plasmid pHBOR04 CP001694
Plasmid pHBOR05 CP001695

2009
Halomicrobium mukohataei arg-2, DSM 12286 3,332,000 3,475 [39] Chromosome CP001688

Plasmid pHmuk01 CP001689

2009
Halopiger xanaduensis SH-6 3,668,000 3,685 DOE Joint Genome Institute Chromosome CP002839

Plasmid pHALXA01 CP002840
Plasmid pHALXA02 CP002841
Plasmid pHALXA03 CP002842

2011 (Chromosome)
Haloquadratum walsbyi C23, DSM 16854 3,148,000 [40] Chromosome FR746099

Plasmid PL6A FR746101
Plasmid PL6B FR746102
Plasmid PL100 FR746100

2011
Haloquadratum walsbyi HBSQ001, DSM 16790 3,132,000 2,914 [41] Chromosome AM180088

Plasmid PL47 AM180089

2006
Halorhabdus tiamatea SARL4B 3,840,000 4,034 [42] AFNT00000000 2011
Halorhabdus utahensis AX-2, DSM 12940 3116 Kb 3076 [43] CP001687 2009
Halorubrum lacusprofundi ATCC 49239 4,300,000 3,725 DOE Joint Genome Institute Chromosome 1 CP001365

Chromosome 2 CP001366
Plasmid pHLAC01 CP001367

2009 (Chromosomes 1 and 2)
Haloterrigena turkmenica VKM B-1734, DSM 5511 5,440,000 5,351 [44] Chromosome CP001860

Plasmid pHTUR01 CP001861
Plasmid pHTUR02 CP001862
Plasmid pHTUR03 CP001863
Plasmid pHTUR04 CP001864
Plasmid pHTUR05 CP001865
Plasmid pHTUR06 CP001866

2010
Natrialba asiatica ATCC 700177 [45] Survey 2004
Natrialba magadii ATCC 43099 3,751,000 4,364 DOE Joint Genome Institute CP001932 2010
Natronomonas pharaonis DSM2160 2,595,221 2,675 [46] Chromosome CR936257

Plasmid PL131 CR936258
Plasmid PL23 CR936259

2005

Methanobacteria[edit]

Species Strain Base Pairs Genes Reference GenBank identifier Publication year
Methanobacterium sp. AL-21 2,583,000 DOE Joint Genome Institute,
Univ of Illinois at Urbana-Champaign
CP002551 2011
Methanobacterium sp. SWAN-1 2,546,000 2,500 DOE Joint Genome Institute,
Univ Illinois at Urbana-Champaign
CP002772 2011
Methanobacterium thermoautotrophicum delta-H 1,751,377 1,869 [47] AE000666 1997
Methanobrevibacter ruminantium M1 2,937,000 2,283 [48] CP001719 2010
Methanobrevibacter smithii DSM 2375 1,704,000 1,748 Washington University ABYW00000000 2008
Methanobrevibacter smithii F1, DSM 2374 1,707,000 1,749 Washington University ABYV00000000 2010
Methanobrevibacter smithii PS, ATCC 35061 1,853,000 1,841 [49] CP000678 2007
Methanobrevibacter smithii TS94A 1,889,000 1,808 [50] AELU00000000 2011
Methanobrevibacter smithii TS94B 1,886,000 1,856 [50] AELV00000000 2011
Methanobrevibacter smithii TS94C 1,910,000 1,812 [50] AELW00000000 2011
Methanobrevibacter smithii TS95A 1,992,000 1,961 [50] AELX00000000 2011
Methanobrevibacter smithii TS95B 1,972,000 1,895 [50] AELY00000000 2011
Methanobrevibacter smithii TS95C 1,978,000 1,874 [50] AELZ00000000 2011
Methanobrevibacter smithii TS95D 2,011,000 1,860 [50] AEMA00000000 2011
Methanobrevibacter smithii TS96A 1,975,000 1,852 [50] AEMB00000000 2011
Methanobrevibacter smithii TS96B 1,869,000 1,742 [50] AEMC00000000 2011
Methanobrevibacter smithii TS96C 1,818,000 1,764 [50] AEMD00000000 2011
Methanobrevibacter smithii TS145A 1,782,000 1,786 [50] AEKU00000000 2011
Methanobrevibacter smithii TS145B 1,797,000 1,880 [50] AELL00000000 2011
Methanobrevibacter smithii TS146A 1,792,000 1,823 [50] AELM00000000 2011
Methanobrevibacter smithii TS146B 1,794,000 1,814 [50] AELN00000000 2011
Methanobrevibacter smithii TS146C 1,947,000 2,355 [50] AELO00000000 2011
Methanobrevibacter smithii TS146D 1,713,000 1,693 [50] AELP00000000 2011
Methanobrevibacter smithii TS146E 1,952,000 1,887 [50] AELQ00000000 2011
Methanobrevibacter smithii TS147A 2,008,000 1,969 [50] AELR00000000 2011
Methanobrevibacter smithii TS147B 1,965,000 1,911 [50] AELS00000000 2011
Methanobrevibacter smithii TS147C 1,973,000 2,014 [50] AELT00000000 2011
Methanosphaera stadtmanae DSM 3091 1,767,403 1,534 [51] CP000102 2005
Methanothermobacter marburgensis Marburg DSM 2133 1,634,000 1,806 [52] CP001710 2010
Methanothermus fervidus V24S, DSM 2088 1,243,000 1,361 [53] CP002278 2010

Methanococci[edit]

Species Strain Base Pairs Genes Reference GenBank identifier Publication year
Methanocaldococcus fervens AG86 1,485,000 1,663 DOE Joint Genome Institute Chromosome CP001696

Plasmid pMEFER01 CP001697

2009 (Chromosome)
Methanocaldococcus infernus ME 1,328,000 1,513 DOE Joint Genome Institute CP002009 2010
Methanocaldococcus jannaschii DSM 2661 1,664,970 1,715 [54] Chromosome: L77117

Large plasmid: L77118
Small plasmid: L77119

1996
Methanocaldococcus vulcanius M7, DSM 12094 1,746,000 1,808 DOE Joint Genome Institute Chromosome CP001787

Plasmid pMETVU01 CP001788
Plasmid pMETVU02 CP001789

2009
Methanocaldococcus sp. FS406-22 1,760,000 1,893 DOE Joint Genome Institute Chromosome CP001901

Plasmid pFS01 CP001902

2010 (Chromosome)
Methanococcus aeolicus Nankai-3 1,569,000 1,554 DOE Joint Genome Institute CP000743 2007
Methanococcus maripaludis C5 1,780,000 1,896 DOE Joint Genome Institute CP000609 2007
Methanococcus maripaludis C6 1,744,000 1,874 DOE Joint Genome Institute CP000867 2007
Methanococcus maripaludis C7 1,772,000 1,858 DOE Joint Genome Institute CP000745 2007
Methanococcus maripaludis S2 1,661,137 1,722 [55] NC_005791 (NCBI Reference Sequence) 2004
Methanococcus maripaludis X1 1,746,000 1,892 [56] CP002913 2011
Methanococcus vannielii SB 1,720,000 1,755 DOE Joint Genome Institute CP000742 2007
Methanococcus voltae A3 1,936,000 1,768 DOE Joint Genome Institute CP002057 2010
Methanothermococcus okinawensis IH1 1,662,000 1,662 DOE Joint Genome Institute Chromosome CP002792

Plasmid pMETOK01 CP002793

2011 (Chromosome)
Methanotorris igneus Kol5, DSM 5666 1,854,000 1,843 DOE Joint Genome Institute CP002737 2011

Methanomicrobia[edit]

Species Strain Base Pairs Genes Reference GenBank identifier Publication year
Candidatus Methanoregula boonei 6A8 2,542,000 2,518 DOE Joint Genome Institute[57] CP000780 2007
Methanocella sp. Rice Cluster I (RC-I) MRE50 3,179,916 3103 Genome sequence,[58] then taxonomic placement[59] AM114193 2005
Methanocella paludicola SANAE 2,957,635 3004 [60] AP011532 2011
Methanocella conradii HZ254 1,316,380 2512 [61] CP003243 2012
Methanococcoides burtonii DSM6242 2,575,032 2,273 [62] CP000300 2009
Methanocorpusculum labreanum Z 1,804,000 1,830 [63] CP000559 2009
Methanoculleus marisnigri JR1, DSM 1498 2,478,000 2,560 [64] CP000562 2009
Methanohalobium evestigatum Z-7303 2,406,232 2,254 DOE Joint Genome Institute[65] Chromosome: CP002069

Plasmid pMETEV01: CP002070

2010 (Chromosome)
Methanohalophilus mahii SLP, DSM 5219 2,012,000 2,095 [66] CP001994 2010
Methanoplanus petrolearius SEBR 4847, DSM 11571 2,843,000 2,881 [67] CP002117 2011
Methanosalsum zhilinae WeN5, DSM 4017 2,138,000 2,086 CP002101 2010
Methanosaeta concilii GP-6 3,008,000 [68] CP002565 2010
Methanosaeta harundinacea 6Ac 2,559,000 [22] CP003117 2011
Methanosaeta thermophila PT 1,879,000 1,785 DOE Joint Genome Institute CP000477 2006
Methanosarcina acetivorans C2A 5,751,492 4,540 [69] AE010299 2002
Methanosarcina barkeri Fusaro, DSM 804 4,837,408 3,607 [70] Chromosome CP000099

Plasmid 1 CP000098

2006 (Chromosome)
Methanosarcina mazei Go1 4,096,345 3,371 [71] AE008384 2002
Methanosphaerula palustris E1-9c, DSM 19958 2,922,000 2,859 DOE Joint Genome Institute CP001338 2008
Methanospirillum hungatei JF-1 3,544,738 3,139 DOE Joint Genome Institute CP000254 2006

Methanopyri[edit]

Species Strain Base Pairs Genes Reference GenBank identifier Publication year
Methanopyrus kandleri AV19 1,694,969 1,691 [72] AE009439 2002

Thermococci[edit]

Species Strain Base Pairs Genes Reference GenBank identifier Publication year
Pyrococcus abyssi GE5 1,765,118 1,784 [73] NC_000868 (NCBI Reference Sequence) 2000
Pyrococcus furiosus DSM 3638 1,908,256 2,065 [74] AE009950 1999
Pyrococcus horikoshii OT3 1,738,505 2,061 [75] NC_000961 (NCBI Reference Sequence) 1998
Pyrococcus sp. NA2 1,861,000 1,984 [22] CP002670 2011
Pyrococcus yayanosii CH1 1,716,000 1,952 [76] CP002779 2011
Thermococcus barophilus MP, DSM 11836 2,010,000 2,196 [77] CP002372 2011
Thermococcus gammatolerans EJ3 2,045,000 2,206 [78] CP001398 2009
Thermococcus kodakaraensis KOD1 2,088,737 2,306 [79] AP006878 2005
Thermococcus onnurineus NA1 1,847,000 2,027 [80] NC_011529 (NCBI Reference Sequence) 2008
Thermococcus sibiricus MM 739 1,845,000 2,085 [81] CP001463 2009
Thermococcus sp. 4557 2,011,000 2,181 [82] CP002920 2011
Thermococcus sp. AM4 2,086,000 2,279 [83] CP002952 2011

Thermoplasmata[edit]

Species Strain Base Pairs Genes Reference GenBank identifier Publication year
Ferroplasma acidarmanus Fer1 1,865,000 1,742 [84] AABC00000000 2007
Picrophilus torridus DSM 9790 1,545,895 1,535 [85] AE017261 2004
Thermoplasma acidophilum DSM 1728 1,564,906 1,478 [86] NC_002578 (NCBI Reference Sequence) 2000
Thermoplasma volcanium GSS1 1,584,804 1,526 [87] NC_002689 (NCBI Reference Sequence) 2000

Unclassified Euryarchaeota[edit]

Species Strain Base Pairs Genes Reference GenBank identifier Publication year
Aciduliprofundum boonei T469 1,486,000 1,587 DOE Joint Genome Institute CP001941 2010

Korarchaeota[edit]

Species Strain Base Pairs Genes Reference GenBank identifier Publication year
Candidatus Korarchaeum cryptofilum OPF8 1,590,000 1,661 [88] CP000968 2008

Nanoarchaeota[edit]

Species Strain Base Pairs Genes Reference GenBank identifier Publication year
Nanoarchaeum equitans Kin4-M 490,885 536 [89] AE017199 2003

Thaumarchaeota[edit]

Cenarchaeales[edit]

Species Strain Base Pairs Genes Reference GenBank identifier Publication year
Cenarchaeum symbiosum A 2,045,000 2,066 [90] DP000238 2006

Nitrosopumilales[edit]

Species Strain Base Pairs Genes Reference GenBank identifier Publication year
Candidatus Nitrosoarchaeum limnia SFB1 1,769,000 2,171 [91] AEGP00000000 2011
Nitrosopumilus maritimus SCM1 1,645,000 1,842 [92] CP000866 2010

Unclassified Archaea[edit]

Species Strain Base Pairs Genes Reference GenBank identifier Publication year
halophilic archaeon sp. DL31 Unpublished[22] CP002988 2011

See also[edit]

References[edit]

  1. ^ Bult CJ, White O, Olsen GJ, Zhou L, Fleischmann RD, Sutton GG, et al. (August 1996). "Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii". Science. 273 (5278): 1058–73. Bibcode:1996Sci...273.1058B. doi:10.1126/science.273.5278.1058. PMID 8688087. S2CID 41481616.
  2. ^ Mardanov AV, Svetlitchnyi VA, Beletsky AV, Prokofeva MI, Bonch-Osmolovskaya EA, Ravin NV, Skryabin KG (August 2010). "The genome sequence of the crenarchaeon Acidilobus saccharovorans supports a new order, Acidilobales, and suggests an important ecological role in terrestrial acidic hot springs". Applied and Environmental Microbiology. 76 (16): 5652–7. Bibcode:2010ApEnM..76.5652M. doi:10.1128/AEM.00599-10. PMC 2918975. PMID 20581186.
  3. ^ Kawarabayasi Y, Hino Y, Horikawa H, Yamazaki S, Haikawa Y, Jin-no K, et al. (April 1999). "Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1". DNA Research. 6 (2): 83–101, 145–52. doi:10.1093/dnares/6.2.83. PMID 10382966.
  4. ^ Ravin NV, Mardanov AV, Beletsky AV, Kublanov IV, Kolganova TV, Lebedinsky AV, et al. (April 2009). "Complete genome sequence of the anaerobic, protein-degrading hyperthermophilic crenarchaeon Desulfurococcus kamchatkensis". Journal of Bacteriology. 191 (7): 2371–9. doi:10.1128/JB.01525-08. PMC 2655497. PMID 19114480.
  5. ^ Brügger K, Chen L, Stark M, Zibat A, Redder P, Ruepp A, et al. (May 2007). "The genome of Hyperthermus butylicus: a sulfur-reducing, peptide fermenting, neutrophilic Crenarchaeote growing up to 108 degrees C". Archaea. 2 (2): 127–35. doi:10.1155/2007/745987. PMC 2686385. PMID 17350933.
  6. ^ Podar M, Anderson I, Makarova KS, Elkins JG, Ivanova N, Wall MA, et al. (2008). "A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans". Genome Biology. 9 (11): R158. doi:10.1186/gb-2008-9-11-r158. PMC 2614490. PMID 19000309.
  7. ^ Göker M, Held B, Lapidus A, Nolan M, Spring S, Yasawong M, et al. (August 2010). "Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1)". Standards in Genomic Sciences. 3 (1): 66–75. doi:10.4056/sigs.1072907. PMC 3035270. PMID 21304693.
  8. ^ Anderson I, Göker M, Nolan M, Lucas S, Hammon N, Deshpande S, et al. (July 2011). "Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A)". Standards in Genomic Sciences. 4 (3): 381–92. doi:10.4056/sigs.2014648. PMC 3156397. PMID 21886865.
  9. ^ Anderson I, Wirth R, Lucas S, Copeland A, Lapidus A, Cheng JF, et al. (October 2011). "Complete genome sequence of Staphylothermus hellenicus P8". Standards in Genomic Sciences. 5 (1): 12–20. doi:10.4056/sigs.2054696. PMC 3236042. PMID 22180806.
  10. ^ Anderson IJ, Dharmarajan L, Rodriguez J, Hooper S, Porat I, Ulrich LE, et al. (April 2009). "The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota". BMC Genomics. 10: 145. doi:10.1186/1471-2164-10-145. PMC 2678158. PMID 19341479.
  11. ^ Spring S, Rachel R, Lapidus A, Davenport K, Tice H, Copeland A, et al. (June 2010). "Complete genome sequence of Thermosphaera aggregans type strain (M11TL)". Standards in Genomic Sciences. 2 (3): 245–59. doi:10.4056/sigs.821804. PMC 3035292. PMID 21304709.
  12. ^ You XY, Liu C, Wang SY, Jiang CY, Shah SA, Prangishvili D, et al. (July 2011). "Genomic analysis of Acidianus hospitalis W1 a host for studying crenarchaeal virus and plasmid life cycles". Extremophiles. 15 (4): 487–97. doi:10.1007/s00792-011-0379-y. PMC 3119797. PMID 21607549.
  13. ^ Liu LJ, You XY, Zheng H, Wang S, Jiang CY, Liu SJ (July 2011). "Complete genome sequence of Metallosphaera cuprina, a metal sulfide-oxidizing archaeon from a hot spring". Journal of Bacteriology. 193 (13): 3387–8. doi:10.1128/JB.05038-11. PMC 3133273. PMID 21551305.
  14. ^ Auernik KS, Maezato Y, Blum PH, Kelly RM (February 2008). "The genome sequence of the metal-mobilizing, extremely thermoacidophilic archaeon Metallosphaera sedula provides insights into bioleaching-associated metabolism". Applied and Environmental Microbiology. 74 (3): 682–92. Bibcode:2008ApEnM..74..682A. doi:10.1128/AEM.02019-07. PMC 2227735. PMID 18083856.
  15. ^ Chen L, Brügger K, Skovgaard M, Redder P, She Q, Torarinsson E, et al. (July 2005). "The genome of Sulfolobus acidocaldarius, a model organism of the Crenarchaeota". Journal of Bacteriology. 187 (14): 4992–9. doi:10.1128/JB.187.14.4992-4999.2005. PMC 1169522. PMID 15995215.
  16. ^ a b Guo L, Brügger K, Liu C, Shah SA, Zheng H, Zhu Y, et al. (April 2011). "Genome analyses of Icelandic strains of Sulfolobus islandicus, model organisms for genetic and virus-host interaction studies". Journal of Bacteriology. 193 (7): 1672–80. doi:10.1128/JB.01487-10. PMC 3067641. PMID 21278296.
  17. ^ a b c d e f g Reno ML, Held NL, Fields CJ, Burke PV, Whitaker RJ (May 2009). "Biogeography of the Sulfolobus islandicus pan-genome". Proceedings of the National Academy of Sciences of the United States of America. 106 (21): 8605–10. Bibcode:2009PNAS..106.8605R. doi:10.1073/pnas.0808945106. PMC 2689034. PMID 19435847.
  18. ^ Jaubert C, Danioux C, Oberto J, Cortez D, Bize A, Krupovic M, et al. (April 2013). "Genomics and genetics of Sulfolobus islandicus LAL14/1, a model hyperthermophilic archaeon". Open Biology. 3 (4): 130010. doi:10.1098/rsob.130010. PMC 3718332. PMID 23594878.
  19. ^ She Q, Singh RK, Confalonieri F, Zivanovic Y, Allard G, Awayez MJ, et al. (July 2001). "The complete genome of the crenarchaeon Sulfolobus solfataricus P2". Proceedings of the National Academy of Sciences of the United States of America. 98 (14): 7835–40. Bibcode:2001PNAS...98.7835S. doi:10.1073/pnas.141222098. PMC 35428. PMID 11427726.
  20. ^ Kawarabayasi Y, Hino Y, Horikawa H, Jin-no K, Takahashi M, Sekine M, et al. (August 2001). "Complete genome sequence of an aerobic thermoacidophilic crenarchaeon, Sulfolobus tokodaii strain7". DNA Research. 8 (4): 123–40. doi:10.1093/dnares/8.4.123. PMID 11572479.
  21. ^ Fitz-Gibbon ST, Ladner H, Kim UJ, Stetter KO, Simon MI, Miller JH (January 2002). "Genome sequence of the hyperthermophilic crenarchaeon Pyrobaculum aerophilum". Proceedings of the National Academy of Sciences of the United States of America. 99 (2): 984–9. Bibcode:2002PNAS...99..984F. doi:10.1073/pnas.241636498. PMC 117417. PMID 11792869.
  22. ^ a b c d "GOLD".
  23. ^ Anderson I, Rodriguez J, Susanti D, Porat I, Reich C, Ulrich LE, et al. (April 2008). "Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction". Journal of Bacteriology. 190 (8): 2957–65. doi:10.1128/JB.01949-07. PMC 2293246. PMID 18263724.
  24. ^ Siebers B, Zaparty M, Raddatz G, Tjaden B, Albers SV, Bell SD, et al. (2011). "The complete genome sequence of Thermoproteus tenax: a physiologically versatile member of the Crenarchaeota". PLOS ONE. 6 (10): e24222. Bibcode:2011PLoSO...624222S. doi:10.1371/journal.pone.0024222. PMC 3189178. PMID 22003381.
  25. ^ Mardanov AV, Gumerov VM, Beletsky AV, Prokofeva MI, Bonch-Osmolovskaya EA, Ravin NV, Skryabin KG (June 2011). "Complete genome sequence of the thermoacidophilic crenarchaeon Thermoproteus uzoniensis 768-20". Journal of Bacteriology. 193 (12): 3156–7. doi:10.1128/JB.00409-11. PMC 3133184. PMID 21478349.
  26. ^ Mavromatis K, Sikorski J, Pabst E, Teshima H, Lapidus A, Lucas S, et al. (September 2010). "Complete genome sequence of Vulcanisaeta distributa type strain (IC-017)". Standards in Genomic Sciences. 3 (2): 117–25. doi:10.4056/sigs.1113067. PMC 3035369. PMID 21304741.
  27. ^ Gumerov VM, Mardanov AV, Beletsky AV, Prokofeva MI, Bonch-Osmolovskaya EA, Ravin NV, Skryabin KG (May 2011). "Complete genome sequence of "Vulcanisaeta moutnovskia" strain 768-28, a novel member of the hyperthermophilic crenarchaeal genus Vulcanisaeta". Journal of Bacteriology. 193 (9): 2355–6. doi:10.1128/JB.00237-11. PMC 3133093. PMID 21398550.
  28. ^ Klenk HP, Clayton RA, Tomb JF, White O, Nelson KE, Ketchum KA, et al. (November 1997). "The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus". Nature. 390 (6658): 364–70. Bibcode:1997Natur.390..364K. doi:10.1038/37052. PMID 9389475.
  29. ^ von Jan M, Lapidus A, Del Rio TG, Copeland A, Tice H, Cheng JF, et al. (June 2010). "Complete genome sequence of Archaeoglobus profundus type strain (AV18)". Standards in Genomic Sciences. 2 (3): 327–46. doi:10.4056/sigs.942153. PMC 3035285. PMID 21304717.
  30. ^ Anderson I, Risso C, Holmes D, Lucas S, Copeland A, Lapidus A, et al. (October 2011). "Complete genome sequence of Ferroglobus placidus AEDII12DO". Standards in Genomic Sciences. 5 (1): 50–60. doi:10.4056/sigs.2225018. PMC 3236036. PMID 22180810.
  31. ^ Roh SW, Nam YD, Nam SH, Choi SH, Park HS, Bae JW (September 2010). "Complete genome sequence of Halalkalicoccus jeotgali B3(T), an extremely halophilic archaeon". Journal of Bacteriology. 192 (17): 4528–9. doi:10.1128/JB.00663-10. PMC 2937367. PMID 20601480.
  32. ^ Liu H, Wu Z, Li M, Zhang F, Zheng H, Han J, et al. (November 2011). "Complete genome sequence of Haloarcula hispanica, a Model Haloarchaeon for studying genetics, metabolism, and virus-host interaction". Journal of Bacteriology. 193 (21): 6086–7. doi:10.1128/JB.05953-11. PMC 3194904. PMID 21994921.
  33. ^ Baliga NS, Bonneau R, Facciotti MT, Pan M, Glusman G, Deutsch EW, et al. (November 2004). "Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea". Genome Research. 14 (11): 2221–34. doi:10.1101/gr.2700304. PMC 525680. PMID 15520287.
  34. ^ Pfeiffer F, Schuster SC, Broicher A, Falb M, Palm P, Rodewald K, et al. (April 2008). "Evolution in the laboratory: the genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1". Genomics. 91 (4): 335–46. doi:10.1016/j.ygeno.2008.01.001. PMID 18313895.
  35. ^ Ng WV, Kennedy SP, Mahairas GG, Berquist B, Pan M, Shukla HD, et al. (October 2000). "Genome sequence of Halobacterium species NRC-1". Proceedings of the National Academy of Sciences of the United States of America. 97 (22): 12176–81. Bibcode:2000PNAS...9712176N. doi:10.1073/pnas.190337797. PMC 17314. PMID 11016950.
  36. ^ Jiang X, Wang S, Cheng H, Huo Y, Zhang X, Zhu X, et al. (December 2011). "Genome sequence of Halobiforma lacisalsi AJ5, an extremely halophilic archaeon which harbors a bop gene". Journal of Bacteriology. 193 (24): 7023–4. doi:10.1128/JB.06282-11. PMC 3232858. PMID 22123770.
  37. ^ Hartman AL, Norais C, Badger JH, Delmas S, Haldenby S, Madupu R, et al. (March 2010). Friedberg I (ed.). "The complete genome sequence of Haloferax volcanii DS2, a model archaeon". PLOS ONE. 5 (3): e9605. Bibcode:2010PLoSO...5.9605H. doi:10.1371/journal.pone.0009605. PMC 2841640. PMID 20333302.
  38. ^ Malfatti S, Tindall BJ, Schneider S, Fähnrich R, Lapidus A, Labuttii K, et al. (September 2009). "Complete genome sequence of Halogeometricum borinquense type strain (PR3)". Standards in Genomic Sciences. 1 (2): 150–9. doi:10.4056/sigs.23264. PMC 3035229. PMID 21304651.
  39. ^ Tindall BJ, Schneider S, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, et al. (November 2009). "Complete genome sequence of Halomicrobium mukohataei type strain (arg-2)". Standards in Genomic Sciences. 1 (3): 270–7. doi:10.4056/sigs.42644. PMC 3035239. PMID 21304667.
  40. ^ Dyall-Smith ML, Pfeiffer F, Klee K, Palm P, Gross K, Schuster SC, et al. (2011). "Haloquadratum walsbyi: limited diversity in a global pond". PLOS ONE. 6 (6): e20968. Bibcode:2011PLoSO...620968D. doi:10.1371/journal.pone.0020968. PMC 3119063. PMID 21701686.
  41. ^ Bolhuis H, Palm P, Wende A, Falb M, Rampp M, Rodriguez-Valera F, et al. (July 2006). "The genome of the square archaeon Haloquadratum walsbyi : life at the limits of water activity". BMC Genomics. 7: 169. doi:10.1186/1471-2164-7-169. PMC 1544339. PMID 16820047.
  42. ^ Antunes A, Alam I, Bajic VB, Stingl U (September 2011). "Genome sequence of Halorhabdus tiamatea, the first archaeon isolated from a deep-sea anoxic brine lake". Journal of Bacteriology. 193 (17): 4553–4. doi:10.1128/JB.05462-11. PMC 3165509. PMID 21705593.
  43. ^ Anderson I, Tindall BJ, Pomrenke H, Göker M, Lapidus A, Nolan M, et al. (November 2009). "Complete genome sequence of Halorhabdus utahensis type strain (AX-2)". Standards in Genomic Sciences. 1 (3): 218–25. doi:10.4056/sigs.31864. PMC 3035240. PMID 21304660.
  44. ^ Saunders E, Tindall BJ, Fähnrich R, Lapidus A, Copeland A, Del Rio TG, et al. (February 2010). "Complete genome sequence of Haloterrigena turkmenica type strain (4k)". Standards in Genomic Sciences. 2 (1): 107–16. doi:10.4056/sigs.681272. PMC 3035258. PMID 21304683.
  45. ^ Goo YA, Roach J, Glusman G, Baliga NS, Deutsch K, Pan M, et al. (January 2004). "Low-pass sequencing for microbial comparative genomics". BMC Genomics. 5 (1): 3. doi:10.1186/1471-2164-5-3. PMC 331400. PMID 14718067.
  46. ^ Falb M, Pfeiffer F, Palm P, Rodewald K, Hickmann V, Tittor J, Oesterhelt D (October 2005). "Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis". Genome Research. 15 (10): 1336–43. doi:10.1101/gr.3952905. PMC 1240075. PMID 16169924.
  47. ^ Smith DR, Doucette-Stamm LA, Deloughery C, Lee H, Dubois J, Aldredge T, et al. (November 1997). "Complete genome sequence of Methanobacterium thermoautotrophicum deltaH: functional analysis and comparative genomics". Journal of Bacteriology. 179 (22): 7135–55. doi:10.1128/jb.179.22.7135-7155.1997. PMC 179657. PMID 9371463.
  48. ^ Leahy SC, Kelly WJ, Altermann E, Ronimus RS, Yeoman CJ, Pacheco DM, et al. (January 2010). "The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions". PLOS ONE. 5 (1): e8926. Bibcode:2010PLoSO...5.8926L. doi:10.1371/journal.pone.0008926. PMC 2812497. PMID 20126622.
  49. ^ Samuel BS, Hansen EE, Manchester JK, Coutinho PM, Henrissat B, Fulton R, et al. (June 2007). "Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut". Proceedings of the National Academy of Sciences of the United States of America. 104 (25): 10643–8. Bibcode:2007PNAS..10410643S. doi:10.1073/pnas.0704189104. PMC 1890564. PMID 17563350.
  50. ^ a b c d e f g h i j k l m n o p q r s t Hansen EE, Lozupone CA, Rey FE, Wu M, Guruge JL, Narra A, et al. (March 2011). "Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins". Proceedings of the National Academy of Sciences of the United States of America. 108 (Suppl 1): 4599–606. Bibcode:2011PNAS..108.4599H. doi:10.1073/pnas.1000071108. PMC 3063581. PMID 21317366.
  51. ^ Fricke WF, Seedorf H, Henne A, Krüer M, Liesegang H, Hedderich R, et al. (January 2006). "The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis". Journal of Bacteriology. 188 (2): 642–58. doi:10.1128/JB.188.2.642-658.2006. PMC 1347301. PMID 16385054.
  52. ^ Liesegang H, Kaster AK, Wiezer A, Goenrich M, Wollherr A, Seedorf H, et al. (November 2010). "Complete genome sequence of Methanothermobacter marburgensis, a methanoarchaeon model organism". Journal of Bacteriology. 192 (21): 5850–1. doi:10.1128/JB.00844-10. PMC 2953689. PMID 20802048.
  53. ^ Anderson I, Djao OD, Misra M, Chertkov O, Nolan M, Lucas S, et al. (November 2010). "Complete genome sequence of Methanothermus fervidus type strain (V24S)". Standards in Genomic Sciences. 3 (3): 315–24. doi:10.4056/sigs.1283367. PMC 3035299. PMID 21304736.
  54. ^ Bult CJ, White O, Olsen GJ, Zhou L, Fleischmann RD, Sutton GG, et al. (August 1996). "Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii". Science. 273 (5278): 1058–73. Bibcode:1996Sci...273.1058B. doi:10.1126/science.273.5278.1058. PMID 8688087. S2CID 41481616.
  55. ^ Hendrickson EL, Kaul R, Zhou Y, Bovee D, Chapman P, Chung J, et al. (October 2004). "Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis". Journal of Bacteriology. 186 (20): 6956–69. doi:10.1128/JB.186.20.6956-6969.2004. PMC 522202. PMID 15466049.
  56. ^ Wang X, Greenfield P, Li D, Hendry P, Volk H, Sutherland TD (October 2011). "Complete genome sequence of a nonculturable Methanococcus maripaludis strain extracted in a metagenomic survey of petroleum reservoir fluids". Journal of Bacteriology. 193 (19): 5595. doi:10.1128/JB.05835-11. PMC 3187424. PMID 21914896.
  57. ^ "Candidatus Methanoregula boonei 6A8". http://genome.jgi-psf.org/metbo/metbo.info.html
  58. ^ Erkel C, Kube M, Reinhardt R, Liesack W (July 2006). "Genome of Rice Cluster I archaea--the key methane producers in the rice rhizosphere". Science. 313 (5785): 370–2. Bibcode:2006Sci...313..370E. doi:10.1126/science.1127062. PMID 16857943. S2CID 42808519.
  59. ^ Sakai S, Imachi H, Hanada S, Ohashi A, Harada H, Kamagata Y (April 2008). "Methanocella paludicola gen. nov., sp. nov., a methane-producing archaeon, the first isolate of the lineage 'Rice Cluster I', and proposal of the new archaeal order Methanocellales ord. nov". International Journal of Systematic and Evolutionary Microbiology. 58 (Pt 4): 929–36. doi:10.1099/ijs.0.65571-0. PMID 18398197.
  60. ^ Sakai S, Takaki Y, Shimamura S, Sekine M, Tajima T, Kosugi H, et al. (2011). "Genome sequence of a mesophilic hydrogenotrophic methanogen Methanocella paludicola, the first cultivated representative of the order Methanocellales". PLOS ONE. 6 (7): e22898. Bibcode:2011PLoSO...622898S. doi:10.1371/journal.pone.0022898. PMC 3146512. PMID 21829548.
  61. ^ Lü Z, Lu Y (May 2012). "Complete genome sequence of a thermophilic methanogen, Methanocella conradii HZ254, isolated from Chinese rice field soil". Journal of Bacteriology. 194 (9): 2398–9. doi:10.1128/JB.00207-12. PMC 3347084. PMID 22493204.
  62. ^ Allen MA, Lauro FM, Williams TJ, Burg D, Siddiqui KS, De Francisci D, et al. (September 2009). "The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation". The ISME Journal. 3 (9): 1012–35. doi:10.1038/ismej.2009.45. PMID 19404327.
  63. ^ Anderson IJ, Sieprawska-Lupa M, Goltsman E, Lapidus A, Copeland A, Glavina Del Rio T, et al. (September 2009). "Complete genome sequence of Methanocorpusculum labreanum type strain Z". Standards in Genomic Sciences. 1 (2): 197–203. doi:10.4056/sigs.35575. PMC 3035222. PMID 21304657.
  64. ^ Anderson IJ, Sieprawska-Lupa M, Lapidus A, Nolan M, Copeland A, Glavina Del Rio T, et al. (September 2009). "Complete genome sequence of Methanoculleus marisnigri Romesser et al. 1981 type strain JR1". Standards in Genomic Sciences. 1 (2): 189–96. doi:10.4056/sigs.32535. PMC 3035220. PMID 21304656.
  65. ^ "Info - Methanohalobium evestigatum Z-7303". Archived from the original on 2015-06-30. Retrieved 2012-03-08.
  66. ^ Spring S, Scheuner C, Lapidus A, Lucas S, Glavina Del Rio T, Tice H, et al. (December 2010). "The genome sequence of Methanohalophilus mahii SLP(T) reveals differences in the energy metabolism among members of the Methanosarcinaceae inhabiting freshwater and saline environments". Archaea. 2010: 690737. doi:10.1155/2010/690737. PMC 3017947. PMID 21234345.
  67. ^ Barber RD, Zhang L, Harnack M, Olson MV, Kaul R, Ingram-Smith C, Smith KS (July 2011). "Complete genome sequence of Methanosaeta concilii, a specialist in aceticlastic methanogenesis". Journal of Bacteriology. 193 (14): 3668–9. doi:10.1128/JB.05031-11. PMC 3133334. PMID 21571998.
  68. ^ Brambilla E, Djao OD, Daligault H, Lapidus A, Lucas S, Hammon N, et al. (October 2010). "Complete genome sequence of Methanoplanus petrolearius type strain (SEBR 4847)". Standards in Genomic Sciences. 3 (2): 203–11. doi:10.4056/sigs.1183143 (inactive 31 January 2024). PMC 3035365. PMID 21304750.{{cite journal}}: CS1 maint: DOI inactive as of January 2024 (link)
  69. ^ Galagan JE, Nusbaum C, Roy A, Endrizzi MG, Macdonald P, FitzHugh W, et al. (April 2002). "The genome of M. acetivorans reveals extensive metabolic and physiological diversity". Genome Research. 12 (4): 532–42. doi:10.1101/gr.223902. PMC 187521. PMID 11932238.
  70. ^ Maeder DL, Anderson I, Brettin TS, Bruce DC, Gilna P, Han CS, et al. (November 2006). "The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes". Journal of Bacteriology. 188 (22): 7922–31. doi:10.1128/JB.00810-06. PMC 1636319. PMID 16980466.
  71. ^ Deppenmeier U, Johann A, Hartsch T, Merkl R, Schmitz RA, Martinez-Arias R, et al. (July 2002). "The genome of Methanosarcina mazei: evidence for lateral gene transfer between bacteria and archaea". Journal of Molecular Microbiology and Biotechnology. 4 (4): 453–61. PMID 12125824.
  72. ^ Slesarev AI, Mezhevaya KV, Makarova KS, Polushin NN, Shcherbinina OV, Shakhova VV, et al. (April 2002). "The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens". Proceedings of the National Academy of Sciences of the United States of America. 99 (7): 4644–9. Bibcode:2002PNAS...99.4644S. doi:10.1073/pnas.032671499. PMC 123701. PMID 11930014.
  73. ^ Gaspin C, Cavaillé J, Erauso G, Bachellerie JP (April 2000). "Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes". Journal of Molecular Biology. 297 (4): 895–906. doi:10.1006/jmbi.2000.3593. PMID 10736225.
  74. ^ Maeder DL, Weiss RB, Dunn DM, Cherry JL, González JM, DiRuggiero J, Robb FT (August 1999). "Divergence of the hyperthermophilic archaea Pyrococcus furiosus and P. horikoshii inferred from complete genomic sequences". Genetics. 152 (4): 1299–305. doi:10.1093/genetics/152.4.1299. PMC 1460691. PMID 10430560.
  75. ^ Kawarabayasi Y, Sawada M, Horikawa H, Haikawa Y, Hino Y, Yamamoto S, et al. (April 1998). "Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3". DNA Research. 5 (2): 55–76. doi:10.1093/dnares/5.2.55. PMID 9679194.
  76. ^ Jun X, Lupeng L, Minjuan X, Oger P, Fengping W, Jebbar M, Xiang X (August 2011). "Complete genome sequence of the obligate piezophilic hyperthermophilic archaeon Pyrococcus yayanosii CH1". Journal of Bacteriology. 193 (16): 4297–8. doi:10.1128/JB.05345-11. PMC 3147706. PMID 21705594.
  77. ^ Vannier P, Marteinsson VT, Fridjonsson OH, Oger P, Jebbar M (March 2011). "Complete genome sequence of the hyperthermophilic, piezophilic, heterotrophic, and carboxydotrophic archaeon Thermococcus barophilus MP". Journal of Bacteriology. 193 (6): 1481–2. doi:10.1128/JB.01490-10. PMC 3067617. PMID 21217005.
  78. ^ Zivanovic Y, Armengaud J, Lagorce A, Leplat C, Guérin P, Dutertre M, et al. (2009). "Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea". Genome Biology. 10 (6): R70. doi:10.1186/gb-2009-10-6-r70. PMC 2718504. PMID 19558674.
  79. ^ Fukui T, Atomi H, Kanai T, Matsumi R, Fujiwara S, Imanaka T (March 2005). "Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes". Genome Research. 15 (3): 352–63. doi:10.1101/gr.3003105. PMC 551561. PMID 15710748.
  80. ^ Lee HS, Kang SG, Bae SS, Lim JK, Cho Y, Kim YJ, et al. (November 2008). "The complete genome sequence of Thermococcus onnurineus NA1 reveals a mixed heterotrophic and carboxydotrophic metabolism". Journal of Bacteriology. 190 (22): 7491–9. doi:10.1128/JB.00746-08. PMC 2576655. PMID 18790866.
  81. ^ Mardanov AV, Ravin NV, Svetlitchnyi VA, Beletsky AV, Miroshnichenko ML, Bonch-Osmolovskaya EA, Skryabin KG (July 2009). "Metabolic versatility and indigenous origin of the archaeon Thermococcus sibiricus, isolated from a siberian oil reservoir, as revealed by genome analysis". Applied and Environmental Microbiology. 75 (13): 4580–8. Bibcode:2009ApEnM..75.4580M. doi:10.1128/AEM.00718-09. PMC 2704819. PMID 19447963.
  82. ^ Wang X, Gao Z, Xu X, Ruan L (October 2011). "Complete genome sequence of Thermococcus sp. strain 4557, a hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent area". Journal of Bacteriology. 193 (19): 5544–5. doi:10.1128/JB.05851-11. PMC 3187469. PMID 21914870.
  83. ^ Oger P, Sokolova TG, Kozhevnikova DA, Chernyh NA, Bartlett DH, Bonch-Osmolovskaya EA, Lebedinsky AV (December 2011). "Complete genome sequence of the hyperthermophilic archaeon Thermococcus sp. strain AM4, capable of organotrophic growth and growth at the expense of hydrogenogenic or sulfidogenic oxidation of carbon monoxide". Journal of Bacteriology. 193 (24): 7019–20. doi:10.1128/JB.06259-11. PMC 3232831. PMID 22123768.
  84. ^ Allen EE, Tyson GW, Whitaker RJ, Detter JC, Richardson PM, Banfield JF (February 2007). "Genome dynamics in a natural archaeal population". Proceedings of the National Academy of Sciences of the United States of America. 104 (6): 1883–8. Bibcode:2007PNAS..104.1883A. doi:10.1073/pnas.0604851104. PMC 1794283. PMID 17267615.
  85. ^ Fütterer O, Angelov A, Liesegang H, Gottschalk G, Schleper C, Schepers B, et al. (June 2004). "Genome sequence of Picrophilus torridus and its implications for life around pH 0". Proceedings of the National Academy of Sciences of the United States of America. 101 (24): 9091–6. Bibcode:2004PNAS..101.9091F. doi:10.1073/pnas.0401356101. PMC 428478. PMID 15184674.
  86. ^ Ruepp A, Graml W, Santos-Martinez ML, Koretke KK, Volker C, Mewes HW, et al. (September 2000). "The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum". Nature. 407 (6803): 508–13. Bibcode:2000Natur.407..508R. doi:10.1038/35035069. PMID 11029001.
  87. ^ Kawashima T, Amano N, Koike H, Makino S, Higuchi S, Kawashima-Ohya Y, et al. (December 2000). "Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium". Proceedings of the National Academy of Sciences of the United States of America. 97 (26): 14257–62. Bibcode:2000PNAS...9714257K. doi:10.1073/pnas.97.26.14257. PMC 18905. PMID 11121031.
  88. ^ Elkins JG, Podar M, Graham DE, Makarova KS, Wolf Y, Randau L, et al. (June 2008). "A korarchaeal genome reveals insights into the evolution of the Archaea". Proceedings of the National Academy of Sciences of the United States of America. 105 (23): 8102–7. Bibcode:2008PNAS..105.8102E. doi:10.1073/pnas.0801980105. PMC 2430366. PMID 18535141.
  89. ^ Waters E, Hohn MJ, Ahel I, Graham DE, Adams MD, Barnstead M, et al. (October 2003). "The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism". Proceedings of the National Academy of Sciences of the United States of America. 100 (22): 12984–8. Bibcode:2003PNAS..10012984W. doi:10.1073/pnas.1735403100. PMC 240731. PMID 14566062.
  90. ^ Hallam SJ, Konstantinidis KT, Putnam N, Schleper C, Watanabe Y, Sugahara J, et al. (November 2006). "Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum". Proceedings of the National Academy of Sciences of the United States of America. 103 (48): 18296–301. Bibcode:2006PNAS..10318296H. doi:10.1073/pnas.0608549103. PMC 1643844. PMID 17114289.
  91. ^ Blainey PC, Mosier AC, Potanina A, Francis CA, Quake SR (February 2011). "Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis". PLOS ONE. 6 (2): e16626. Bibcode:2011PLoSO...616626B. doi:10.1371/journal.pone.0016626. PMC 3043068. PMID 21364937.
  92. ^ Walker CB, de la Torre JR, Klotz MG, Urakawa H, Pinel N, Arp DJ, et al. (May 2010). "Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea". Proceedings of the National Academy of Sciences of the United States of America. 107 (19): 8818–23. Bibcode:2010PNAS..107.8818W. doi:10.1073/pnas.0913533107. PMC 2889351. PMID 20421470.

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