Methanogenesis or biomethanation is the formation of methane by microbes known as methanogens. Organisms capable of producing methane have been identified only from the domain Archaea, a group phylogenetically distinct from both eukaryotes and bacteria, although many live in close association with anaerobic bacteria. The production of methane is an important and widespread form of microbial metabolism. In most environments, it is the final step in the decomposition of biomass.
 Biochemistry of methanogenesis
Methanogenesis in microbes is a form of anaerobic respiration. Methanogens do not use oxygen to respire; in fact, oxygen inhibits the growth of methanogens. The terminal electron acceptor in methanogenesis is not oxygen, but carbon. The carbon can occur in a small number of organic compounds, all with low molecular weights. The two best described pathways involve the use of carbon dioxide and acetic acid as terminal electron acceptors:
- CO2 + 4 H2 → CH4 + 2H2O
- CH3COOH → CH4 + CO2
However, depending on pH and temperature, methanogenesis has been shown to use carbon from other small organic compounds, such as formic acid (formate), methanol, methylamines, dimethyl sulfide, and methanethiol.
 Proposed mechanism of methanogenesis
The mechanism for the conversion of CH3–S bond into methane involves a ternary complex of methyl coenzyme M and coenzyme B fit into a channel terminated by the axial site on nickel of the cofactor F430. One proposed mechanism invokes electron transfer from Ni(I) (to give Ni(II)), which initiates formation of CH4. Coupling of the coenzyme M thiyl radical (RS.) with HS coenzyme B releases a proton and re-reduces Ni(II) by one-electron, regenerating Ni(I).
 Reverse methanogenesis
- RS-SR + CH4 → RS-H + RS-CH3
Organisms that promote this remarkable reaction contain 7% by weight of F430.
 Importance in carbon cycle
Methanogenesis is the final step in the decay of organic matter. During the decay process, electron acceptors (such as oxygen, ferric iron, sulfate, and nitrate) become depleted, while hydrogen (H2) and carbon dioxide accumulate. Light organics produced by fermentation also accumulate. During advanced stages of organic decay, all electron acceptors become depleted except carbon dioxide. Carbon dioxide is a product of most catabolic processes, so it is not depleted like other potential electron acceptors.
Only methanogenesis and fermentation can occur in the absence of electron acceptors other than carbon. Fermentation only allows the breakdown of larger organic compounds, and produces small organic compounds. Methanogenesis effectively removes the semi-final products of decay: hydrogen, small organics, and carbon dioxide. Without methanogenesis, a great deal of carbon (in the form of fermentation products) would accumulate in anaerobic environments.
 Natural occurrence
 In ruminants
Methanogenesis occurs in the guts of humans and other animals, especially ruminants. In the rumen, anaerobic organisms, including methanogens, digest cellulose into forms usable by the animal. Without these microorganisms, animals such as cattle would not be able to consume grass. The useful products of methanogenesis are absorbed by the gut, but methane is released from the animal mainly by belching (eructation). The average cow emits around 250 liters of methane per day.
 In humans
Some humans produce flatus that contains methane. In one study of the feces of nine adults, only five of the samples contained archaea capable of producing methane. Similar results are found in samples of gas obtained from within the rectum.
Even among humans whose flatus does contain methane, the amount is in the range of 10% or less of the total amount of gas.
 In plants
Some experiments have suggested that leaf tissues of living plants emit methane. Other research has indicated that the plants are not actually generating methane; they are just absorbing methane from the soil and then emitting it through their leaf tissues. There may still be some unknown mechanism by which plants produce methane, but that is by no means certain.
 Role in global warming
Methane in the Earth's atmosphere is an important greenhouse gas with a global warming potential 25 times greater than carbon dioxide (averaged over 100 years), and methanogenesis in livestock and the decay of organic material is thus a considerable contributor to global warming. It may not be a net contributor in the sense that it works on organic material which used up atmospheric carbon dioxide when it was created, but its overall effect is to convert the carbon dioxide into methane which is a much more potent greenhouse gas.
Methanogenesis can also be beneficially exploited, to treat organic waste, to produce useful compounds, and the methane can be collected and used as biogas, a fuel. It is the primary pathway whereby most organic matter disposed of via landfill is broken down.
 Methanogenesis and extra-terrestrial life
The presence of atmospheric methane has a role in the scientific search for extra-terrestrial life. The argument being that methane in the atmosphere will eventually dissipate, unless something is replenishing it. This can be detected (by using a spectrometer for example) then that means there is, or relatively recently was, life present. This was debated when methane was discovered in the Martian atmosphere by M.J. Mumma of NASA's Goddard Flight Center, and verified by the Mars Express Orbiter (2004) and in Titan's atmosphere by the Huygens probe (2005). It is also argued that atmospheric methane can come from volcanoes or other fissures in the planet's crust and that without an Isotopic signature it is difficult to say what exactly was the origin.
 See also
- Thauer, R. K., "Biochemistry of Methanogenesis: a Tribute to Marjory Stephenson", Microbiology, 1998, volume 144, pages 2377-2406.
- Finazzo C, Harmer J, Bauer C, et al. (April 2003). "Coenzyme B induced coordination of coenzyme M via its thiol group to Ni(I) of F430 in active methyl-coenzyme M reductase". J. Am. Chem. Soc. 125 (17): 4988–9. doi:10.1021/ja0344314. PMID 12708843.
- Krüger M, Meyerdierks A, Glöckner FO, et al. (December 2003). "A conspicuous nickel protein in microbial mats that oxidize methane anaerobically". Nature 426 (6968): 878–81. doi:10.1038/nature02207. PMID 14685246.
- Radio Australia: "Innovations – Methane In Agriculture." 15 August 2004. Retrieved 28 August 2007.
- Miller TL; Wolin MJ, de Macario EC, Macario AJ (1982). "Isolation of Methanobrevibacter smithii from human feces". Appl Environ Microbiol 43 (1): 227–32. PMC 241804. PMID 6798932.
- "Human Digestive System". Encyclopædia Britannica. Retrieved 2007-08-22.
- Kepler F; et al. (2006). "Methane emissions from terrestrial plants under aerobic conditions". Nature. 439 (7073): 187–191. Bibcode:2006Natur.439..187K. doi:10.1038/nature04420. PMID 16407949.
- "Global Warming Potentials". Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change, 2007. 2007. Retrieved 2012-05-24.
- DoE Report CWM039A+B/92 Young, A. (1992)
- Scientific Search for Extra-Terrestrial life http://en.wikipedia.org/wiki/Extraterrestrial_life#Scientific_search_for_extraterrestrial_life
- BBC article about methane as sign of life http://news.bbc.co.uk/2/hi/science/nature/4295475.stm
- European Space Agency, Methane in Martian Atmosphere http://www.esa.int/esaMI/Mars_Express/SEMZ0B57ESD_0.html
- Space.Com article about methane on Huygens http://www.space.com/scienceastronomy/ap_huygens_update_050127.html
- New Scientist article about atmospheric methane http://www.newscientist.com/article.ns?id=dn7059
- National Geographic Article about methane as sign of life http://news.nationalgeographic.com/news/2004/10/1007_041007_mars_methane.html