Native Bay is a waterway in Kivalliq Region, Nunavut, Canada. It is located in Hudson Bay off western Southampton Island. The Bell Peninsula lies to the southeast. Native Point is located at the bay's southern tip. East Bay is 20 km (12 mi) to the east.
The habitat is characterized by barrens, coastal marine features, grassy meadows, inlets, rocky flats, sedge, and tundra.
Caribou frequent the area.
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