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Paper chromatography is an analytical method technique for separating and identifying mixtures that are or can be coloured, especially pigments. This can also be used in secondary or primary colours in ink experiments. This method has been largely replaced by thin layer chromatography, however it is still a powerful teaching tool. Double-way paper chromatography, also called two-dimensional chromatography, involves using two solvents and rotating the paper 90° in between. This is useful for separating complex mixtures of similar compounds, for example, amino acids.
Rƒ value 
The retention factor (Rƒ) may be defined as the ratio of the distance traveled by the substance to the distance traveled by the solvent. Rƒ values are usually expressed as a fraction of two decimal places but it was suggested by Smith that a percentage figure should be used instead. If Rƒ value of a solution is zero, the solute remains in the stationary phase and thus it is immobile. If Rƒ value = 1 then the solute has no affinity for the stationary phase and travels with the solvent front. To calculate the Rƒ value, take the distance traveled by the substance divided by the distance traveled by the solvent (as mentioned earlier in terms of ratios). For example, if a compound travels 2.1 cm and the solvent front travels 2.8 cm, (2.1/2.8) the Rƒ value = 0.75
Pigments and Polarity 
Paper chromatography is one method for testing the purity of compounds and identifying substances. Paper chromatography is a useful technique because it is relatively quick and requires small quantities of material. Separations in paper chromatography involve the same principles as those in thin layer chromatography. In paper chromatography, like thin layer chromatography, substances are distributed between a stationary phase and a mobile phase. The stationary phase is usually a piece of high quality filter paper. The mobile phase is a developing solution that travels up the stationary phase, carrying the samples with it. Components of the sample will separate readily according to how strongly they absorb on the stationary phase versus how readily they dissolve in the mobile phase.
When a colored chemical sample is placed on a filter paper, the colours separate from the sample by placing one end of the paper in a solvent. The solvent diffuses up the paper, dissolving the various molecules in the sample according to the polarities of the molecules and the solvent. If the sample contains more than one colour, that means it must have more than one kind of molecule. Because of the different chemical structures of each kind of molecule, the chances are very high that each molecule will have at least a slightly different polarity, giving each molecule a different solubility in the solvent. The unequal solubilities cause the various color molecules to leave solution at different places as the solvent continues to move up the paper. The more soluble a molecule is, the higher it will migrate up the paper. If a chemical is very nonpolar it will not dissolve at all in a very polar solvent. This is the same for a very polar chemical and a very nonpolar solvent.
It is important to note that when using water (a very polar substance) as a solvent, the less polar the colour, the lower it will rise on the paper.
Types of Paper Chromatography 
1.Descending Paper Chromatography-In this type development of paper is done by allowing the solvent to travel down the paper is called Descending Chromatography. Here the mobile phase is present in the upper portion.
2.Ascending Paper Chromatography-Here the solvent travel upward direction of the Chromatographic paper. Both the Descending and Ascending Paper Chromatography are used for separation of Organic and Inorganic substances.
3.Ascending-Descending Paper Chromatography-It is the hybrid of both the above technique. The upper part of the Ascending chromatography can be folded over a rod and allowing the paper to become descending after crossing the rod.
4.Radial Paper Chromatography-It is also called as Circular chromatography. Here a circular filter paper is taken and the sample is given at the center of the paper. After drying the spot the filter paper tied horizontally on a Petridish containing solvent. So that Wick of the paper is dipped inside the solvent. The solvent rises through the wick and the component get separated in form of concentrate circular zone.
5.Two-Dimensional Paper Chromatography-In this technique a square or rectangular paper is used. Here the sample is applied to one of the corner and development is performed at right angle to the direction of first run.
The discovery of paper chromatography in 1943 by Martin and Synge provided for the first time the means of surveying constituents of plants and for their separation and identification. There was an explosion of activity in this field after 1945.