RBM8A

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RNA binding motif protein 8A
Protein RBM8A PDB 1p27.png
PDB rendering based on 1p27.
Available structures
PDB Ortholog search: PDBe, RCSB
Identifiers
Symbols RBM8A ; BOV-1A; BOV-1B; BOV-1C; C1DELq21.1; DEL1q21.1; MDS014; RBM8; RBM8B; TAR; Y14; ZNRP; ZRNP1
External IDs OMIM605313 MGI1913129 HomoloGene3744 GeneCards: RBM8A Gene
RNA expression pattern
PBB GE RBM8A 214113 s at tn.png
PBB GE RBM8A 213852 at tn.png
PBB GE RBM8A 217856 at tn.png
More reference expression data
Orthologs
Species Human Mouse
Entrez 9939 60365
Ensembl ENSG00000265241 ENSMUSG00000038374
UniProt Q9Y5S9 Q9CWZ3
RefSeq (mRNA) NM_005105 NM_001102407
RefSeq (protein) NP_005096 NP_001095877
Location (UCSC) Chr 1:
145.92 – 145.93 Mb
Chr 3:
96.63 – 96.63 Mb
PubMed search [1] [2]

RNA-binding protein 8A is a protein that in humans is encoded by the RBM8A gene.[1][2]

This gene encodes a protein with a conserved RNA-binding motif. The protein is found predominantly in the nucleus, although it is also present in the cytoplasm. It is preferentially associated with mRNAs produced by splicing, including both nuclear mRNAs and newly exported cytoplasmic mRNAs. It is thought that the protein remains associated with spliced mRNAs as a tag to indicate where introns had been present, thus coupling pre- and post-mRNA splicing events. Previously, it was thought that two genes encode this protein, RBM8A and RBM8B; it is now thought that the RBM8B locus is a pseudogene. Two alternative start codons result in two forms of the protein, and this gene also uses multiple polyadenylation sites.[3]

Interactions[edit]

RBM8A has been shown to interact with IPO13,[4] MAGOH[5][6] and UPF3A.[7]

Related gene problems[edit]

References[edit]

  1. ^ Conklin DC, Rixon MW, Kuestner RE, Maurer MF, Whitmore TE, Millar RP (October 2000). "Cloning and gene expression of a novel human ribonucleoprotein". Biochim Biophys Acta 1492 (2–3): 465–9. doi:10.1016/s0167-4781(00)00090-7. PMID 11004516. 
  2. ^ Salicioni AM, Xi M, Vanderveer LA, Balsara B, Testa JR, Dunbrack RL Jr, Godwin AK (October 2000). "Identification and structural analysis of human RBM8A and RBM8B: two highly conserved RNA-binding motif proteins that interact with OVCA1, a candidate tumor suppressor". Genomics 69 (1): 54–62. doi:10.1006/geno.2000.6315. PMID 11013075. 
  3. ^ "Entrez Gene: RBM8A RNA binding motif protein 8A". 
  4. ^ Mingot, J M; Kostka S; Kraft R; Hartmann E; Görlich D (July 2001). "Importin 13: a novel mediator of nuclear import and export". EMBO J. (England) 20 (14): 3685–94. doi:10.1093/emboj/20.14.3685. ISSN 0261-4189. PMC 125545. PMID 11447110. 
  5. ^ Zhao, X F; Nowak N J; Shows T B; Aplan P D (January 2000). "MAGOH interacts with a novel RNA-binding protein". Genomics (UNITED STATES) 63 (1): 145–8. doi:10.1006/geno.1999.6064. ISSN 0888-7543. PMID 10662555. 
  6. ^ Kataoka, N; Diem M D; Kim V N; Yong J; Dreyfuss G (November 2001). "Magoh, a human homolog of Drosophila mago nashi protein, is a component of the splicing-dependent exon–exon junction complex". EMBO J. (England) 20 (22): 6424–33. doi:10.1093/emboj/20.22.6424. ISSN 0261-4189. PMC 125744. PMID 11707413. 
  7. ^ Kim, V N; Kataoka N; Dreyfuss G (September 2001). "Role of the nonsense-mediated decay factor hUpf3 in the splicing-dependent exon-exon junction complex". Science (United States) 293 (5536): 1832–6. doi:10.1126/science.1062829. ISSN 0036-8075. PMID 11546873. 
  8. ^ Klopocki E, Schulze H, Strauss G, et al. (February 2007). "Complex Inheritance Pattern Resembling Autosomal Recessive Inheritance Involving a Microdeletion in Thrombocytopenia–Absent Radius Syndrome". Am. J. Hum. Genet. 80 (2): 232–40. doi:10.1086/510919. PMC 1785342. PMID 17236129. 

Further reading[edit]