Selenocysteine

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Selenocysteine[1]
Selenocysteine2DACS.svg Selenocysteine-3D-vdW.png
Identifiers
CAS number 10236-58-5 N
PubChem 25076
ChemSpider 23436 YesY
UNII 0CH9049VIS N
DrugBank DB02345
KEGG C05688 YesY
ChEBI CHEBI:16633 YesY
ChEMBL CHEMBL109962 YesY
Jmol-3D images Image 1
Properties
Molecular formula C3H7NO2Se
Molar mass 168.05 g mol−1
Except where noted otherwise, data are given for materials in their standard state (at 25 °C (77 °F), 100 kPa)
 N (verify) (what is: YesY/N?)
Infobox references

Selenocysteine (abbreviated as Sec or U, in older publications also as Se-Cys)[2] is the 21st proteinogenic amino acid. It exists naturally in all kingdoms of life as a building block of selenoproteins.[3] Selenocysteine is a cysteine analogue with a selenium-containing selenol group in place of the sulfur-containing thiol group. It is present in several enzymes (for example glutathione peroxidases, tetraiodothyronine 5' deiodinases, thioredoxin reductases, formate dehydrogenases, glycine reductases, selenophosphate synthetase 1, methionine-R-sulfoxide reductase B1 (SEPX1), and some hydrogenases). Selenocysteine was discovered by biochemist Theresa Stadtman,[4] wife of Earl R. Stadtman, at the National Institutes of Health.

Structure[edit]

Selenocysteine has a structure similar to that of cysteine, but with an atom of selenium taking the place of the usual sulfur, forming a selenol group which is deprotonated at physiological pH. Proteins that contain one or more selenocysteine residues are called selenoproteins and those with catalytic activities which depend on selenocysteine's biochemical activity are called selenoenzymes. The structurally characterized selenoenzymes have been found to employ catalytic triad structures that influence the nucleophilicity of the active site selenocysteine.

Biology[edit]

Selenocysteine has both a lower pKa (5.47) and a higher reduction potential than cysteine. These properties make it very suitable in proteins that are involved in antioxidant activity.[5]

Unlike other amino acids present in biological proteins, selenocysteine is not coded for directly in the genetic code.[6] Instead, it is encoded in a special way by a UGA codon, which is normally a stop codon. Such a mechanism is called translational recoding[7] and its efficiency depends on the selenoprotein being synthesized and on translation initiation factors.[8] When cells are grown in the absence of selenium, translation of selenoproteins terminates at the UGA codon, resulting in a truncated, nonfunctional enzyme. The UGA codon is made to encode selenocysteine by the presence of a selenocysteine insertion sequence (SECIS) in the mRNA. The SECIS element is defined by characteristic nucleotide sequences and secondary structure base-pairing patterns. In bacteria, the SECIS element is typically located immediately following the UGA codon within the reading frame for the selenoprotein.[9] In Archaea and in eukaryotes, the SECIS element is in the 3' untranslated region (3' UTR) of the mRNA, and can direct multiple UGA codons to encode selenocysteine residues.[10]

Again unlike the other amino acids, no free pool of selenocysteine exists in the cell. Its high reactivity would cause damage to cells. Instead, cells store selenium in the less reactive selenide form (H2Se). Selenocysteine synthesis occurs on a specialized tRNA, which also functions to incorporate it into nascent polypeptides. The primary and secondary structure of selenocysteine-specific tRNA, tRNASec, differ from those of standard tRNAs in several respects, most notably in having an 8-base (bacteria) or 10-base (eukaryotes) pair acceptor stem, a long variable region arm, and substitutions at several well-conserved base positions. The selenocysteine tRNAs are initially charged with serine by seryl-tRNA ligase, but the resulting Ser-tRNASec is not used for translation because it is not recognised by the normal translation elongation factor (EF-Tu in bacteria, eEF1A in eukaryotes). Rather, the tRNA-bound seryl residue is converted to a selenocysteine residue by the pyridoxal phosphate-containing enzyme selenocysteine synthase. Finally, the resulting Sec-tRNASec is specifically bound to an alternative translational elongation factor (SelB or mSelB (or eEFSec)), which delivers it in a targeted manner to the ribosomes translating mRNAs for selenoproteins. The specificity of this delivery mechanism is brought about by the presence of an extra protein domain (in bacteria, SelB) or an extra subunit (SBP2 for eukaryotic mSelB/eEFSec) which bind to the corresponding RNA secondary structures formed by the SECIS elements in selenoprotein mRNAs.

Twenty-five human proteins contain selenocysteine (selenoproteins).[11]

Selenocysteine derivatives γ-glutamyl-Se-methylselenocysteine and Se-methylselenocysteine occur naturally in plants of the genera Allium and Brassica.[12]

Applications[edit]

Biotechnological applications of selenocysteine include use of 73Se-labeled Sec (half-life of 73Se = 7.2 hours) in positron emission tomography (PET) studies and 75Se-labeled Sec (half-life of 75Se = 118.5 days) in specific radiolabeling, facilitation of phase determination by multi-wavelength anomalous diffraction in X-ray crystallography of proteins by introducing Sec alone, or Sec together with selenomethionine (SeMet), and incorporation of the stable 77Se isotope, which has a nuclear spin of 1/2 and can be used for high-resolution NMR, among others.[3]

See also[edit]

  • Pyrrolysine, another amino acid not in the basic set of 20.
  • Selenomethionine, another selenium-containing amino acid, which is randomly substituted for methionine.

References[edit]

  1. ^ Merck Index, 12th Edition, 8584
  2. ^ "IUPAC-IUBMB Joint Commission on Biochemical Nomenclature (JCBN) and Nomenclature Committee of IUBMB (NC-IUBMB)" (pdf). European Journal of Biochemistry 264 (2): 607–609. 1999. doi:10.1046/j.1432-1327.1999.news99.x. 
  3. ^ a b Johansson, L.; Gafvelin, G.; Amér, E. S. J. (2005). "Selenocysteine in Proteins — Properties and Biotechnological Use". Biochimica et Biophysica Acta 1726 (1): 1–13. doi:10.1016/j.bbagen.2005.05.010. 
  4. ^ Stadtman, Therese (Mar 8, 1974). "Selenium Biochemistry". Science 183 (4128): 915. doi:10.1126/science.183.4128.915. PMID 4605100. 
  5. ^ Byun, B. J.; Kang, Y. K. (2011). "Conformational Preferences and pKa Value of Selenocysteine Residue". Biopolymers 95 (5): 345–353. doi:10.1002/bip.21581. PMID 21213257. 
  6. ^ Böck A.; Forchhammer, K.; Heider, J.; Baron, C. (1991). "Selenoprotein Synthesis: An Expansion of the Genetic Code". Trends in Biochemical Sciences 16 (12): 463–467. doi:10.1016/0968-0004(91)90180-4. PMID 1838215. 
  7. ^ Baranov P. V.; Gesteland R. F.; Atkins, J. F. (2002). "Recoding: Translational Bifurcations in Gene Expression". Gene 286 (5): 187–201. doi:10.1016/S0378-1119(02)00423-7. PMID 11943474. 
  8. ^ Donovan, J.; Copeland, P. R. (2010). "The Efficiency of Selenocysteine Incorporation is Regulated by Translation Initiation Factors". Journal of Molecular Biology 400 (4): 659–664. doi:10.1016/j.jmb.2010.05.026. PMID 20488192. 
  9. ^ Atkins, J. F. (2009). Recoding: Expansion of Decoding Rules Enriches Gene Expression. Springer. p. 31. ISBN 9780387893815. 
  10. ^ Berry, M. J.; Banu, L.; Harney, J. W.; Larsen, P. R. (1993). "Functional Characterization of the Eukaryotic SECIS Elements which Direct Selenocysteine Insertion at UGA Codons" (pdf). The EMBO Journal 12 (8): 3315–3322. PMC 413599. PMID 8344267. 
  11. ^ Kryukov, G. V.; Castellano, S.; Novoselov, S. V.; Lobanov, A. V.; Zehtab, O.; Guigó, R.; Gladyshev, V. N. (2003). "Characterization of Mammalian Selenoproteomes". Science 300 (5624): 1439–1443. doi:10.1126/science.1083516. PMID 12775843. 
  12. ^ Block, E. (2010). Garlic and Other Alliums: The Lore and the Science. Royal Society of Chemistry. ISBN 0-85404-190-7. 

Further reading[edit]