Star activity

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Star activity is the relaxation or alteration of the specificity of restriction enzyme mediated cleavage of DNA that can occur under reaction conditions that differ significantly from those optimum for the enzyme. The result is typically cleavage at non-canonical recognition site, or sometimes complete loss of specificity.

Differences which can lead to star include low ionic strength, high pH, and high (> 5% v/v) glycerol concentrations.[1] The latter condition is of particular practical interest, since commercial restriction enzymes are usually supplied in a buffer containing a substantial amount of glycerol (50% v/v is typical), meaning insufficient dilution of the enzyme solution can cause star activity; this problem most often arises during double or multiple digests. Star activity can happen because of presence of Mg2+, as is seen in HindIII, for example.

External links[edit]

The Fidelity Index provides a systematic quantitation of star activity of DNA restriction endonucleases

References[edit]

  1. ^ Robinson CR and Sliger SG (1993) Molecular Recognition Mediated by Bound Water : A Mechanism for Star Activity of the Restriction Endonuclease EcoRI. Journal of Molecular Biology. 234:302-306.