For other uses, see Yass
YASS is a public domain, pairwise sequence alignment software for nucleotide sequences. This program accepts sequences in FASTA format and the output format includes the BLAST tabular output. YASS uses several transition-constrained spaced seeds that allow to considerably improve the sensitivity. The program can be used through the YASS web server that produces a browser based dot-plot, or as a standalone program which can be installed with the source code.
- ^ Noe L., Kucherov. G. (2005). "YASS: enhancing the sensitivity of DNA similarity search". Nucleic Acids Research 33 (2): W540–W543. doi:10.1093/nar/gki478. PMC 1160238. PMID 15980530.
- ^ Noe L., Kucherov. G. (2004). "Improved hit criteria for DNA local alignment". BMC Bioinformatics 5: 149. doi:10.1186/1471-2105-5-149. PMC 526756. PMID 15485572.