Actinobacteria

From Wikipedia, the free encyclopedia
Jump to: navigation, search
Actinobacteria
Actinomyces israelii.jpg
Scanning electron micrograph of Actinomyces israelii.
Scientific classification
Domain: Bacteria
Phylum: Actinobacteria
Goodfellow, 2012
Class: Actinobacteria
Stackebrandt et al. 1997
Subclasses & Orders

Actinobacteria is a phylum of gram-positive bacteria. They can be terrestrial or aquatic.[1] They are of great economic importance to humans because agriculture and forests depend on their contributions to soil systems. In soil, they behave much like fungi, helping to decompose the organic matter of dead organisms so that the molecules can be taken up anew by plants. In this role the colonies often grow extensive mycelia, like a fungus would, and the name of an important order of the phylum, Actinomycetales (the actinomycetes), reflects that they were long believed to be fungi. Some soil actinobacteria (such as Frankia) live symbiotically with the plants whose roots pervade the soil, fixing nitrogen for the plants in exchange for access to some of the plant's saccharides.

Beyond the great interest in actinobacteria for their soil role, much is yet to be learned about them. Although currently understood primarily as soil bacteria, they might be more abundant in freshwaters.[2] Actinobacteria is one of the dominant bacterial phyla and contains one of the largest of bacterial genera, Streptomyces.[3] Streptomyces and other actinobacteria are major contributors to biological buffering of soils.[4] They are also the source of many antibiotics.

Although some of the largest and most complex bacterial cells belong to the Actinobacteria, the group of marine Actinomarinales has been described as possessing the smallest free-living prokaryotic cells.[5]

General[edit]

Most Actinobacteria of medical or economic significance are in subclass Actinobacteridae, and belong to the order: Actinomycetales. While many of these cause disease in humans, Streptomyces is notable as a source of antibiotics.

Of those Actinobacteria not in Actinomycetales, Gardnerella is one of the most researched. Classification of Gardnerella is controversial, and MeSH catalogues it as both a gram-positive and gram-negative organism.[6]

Actinobacteria, especially Streptomyces sp., are recognized as the producers of many bioactive metabolites that are useful to humans in medicine, such as antibacterials,[7] antifungals,[8] antivirals, antithrombotics, immunomodifiers, anti-tumor drugs and enzyme inhibitors; and in agriculture, including insecticides, herbicides, fungicides and growth promoting substances for plants and animals.[9][10] Actinobacteria-derived antibiotics that are important in medicine include aminoglycosides, anthracyclines, chloramphenicol, macrolide, tetracyclines etc.

Actinobacteria have high guanine and cytosine content in their DNA.[11] The G+C content of Actinobacteria can be as high as 70%, though some may have a low G+C content.[12]

Analysis of glutamine synthetase sequence has been suggested for phylogenetic analysis of Actinobacteria.[13]

Phylogeny[edit]

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [14] and National Center for Biotechnology Information (NCBI)[15] and the phylogeny is based on 16S rRNA-based LTP release 106 by The All-Species Living Tree Project [16]



?Candidatus Planktophila limnetica Jezbera et al. 2009



?Cathayosporangium alboflavumRunmao et al. 1995



?Tonsillophilus suisAzuma and Bak 1980



Rubrobacter Suzuki et al. 1989



  Thermoleophilidae

Gaiella occulta Albuquerque et al. 2012




Thermoleophilum Zarilla and Perry 1986



Solirubrobacterales






Coriobacteriaceae




Acidimicrobiales



 Nitriliruptoridae

Euzebya tangerina Kurahashi et al. 2010



Nitriliruptor alkaliphilus Sorokin et al. 2009



  Actinomycetales

?Boyliae praeputialeYates et al. 2002



?Frankia alni(Woronin 1866) Von Tubeuf 1895



?Motilibacter peucedani Lee 2012



Acidothermus cellulolyticus Mohagheghi et al. 1986






Jiangellaceae




Micromonosporaceae




Propionibacterineae





Actinocatenispora Thawai et al. 2006 emend. Seo and Lee 2009



Glycomycetaceae




Streptosporangineae








Pseudonocardiaceae [incl. Actinopolyspora]



Corynebacterineae






Catenulisporineae




Streptomyces Waksman and Henrici 1943 emend. Witt and Stackebrandt 1991 [incl. Kitasatospora & Streptacidiphilus]





Sporichthya Lechevalier et al. 1968



Cryptosporangiaceae





Geodermatophilaceae




Nakamurellaceae




Kineosporiaceae




Kineococcus Yokota et al. 1993




Angustibacter luteus Tamura et al. 2010



Micrococcineae [incl. Actinomycetaceae & Bifidobacteriaceae]

















Notes:
♪ Prokaryotes where no pure (axenic) cultures are isolated or available, i. e. not cultivated or can not be sustained in culture for more than a few serial passages
♠ Strains found at the National Center for Biotechnology Information (NCBI) but not listed in the List of Prokaryotic names with Standing in Nomenclature (LSPN)

See also[edit]

References[edit]

  1. ^ Servin JA, Herbold CW, Skophammer RG, Lake JA (January 2008). "Evidence excluding the root of the tree of life from the actinobacteria". Mol. Biol. Evol. 25 (1): 1–4. doi:10.1093/molbev/msm249. PMID 18003601. 
  2. ^ Ghai R, Rodriguez-Valera F, McMahon KD, et al. (2011). Lopez-Garcia P, ed. "Metagenomics of the water column in the pristine upper course of the Amazon river". PLOS ONE. 6 (8): e23785. doi:10.1371/journal.pone.0023785. PMC 3158796free to read. PMID 21915244. 
  3. ^ C.Michael Hogan. 2010. Bacteria. Encyclopedia of Earth. eds. Sidney Draggan and C.J.Cleveland, National Council for Science and the Environment, Washington DC
  4. ^ Ningthoujam, Debananda S.; Sanasam, Suchitra; Tamreihao, K; Nimaichand, Salam (November 2009). "Antagonistic activities of local actinomycete isolates against rice fungal pathogens". African Journal of Microbiology Research. 3 (11): 737–742. 
  5. ^ Ghai R, Mizuno CM, Picazo A, Camacho A, Rodriguez-Valera F (2013). "Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria". Scientific Reports. 3: 2471. doi:10.1038/srep02471. PMC 3747508free to read. PMID 23959135. 
  6. ^ Gardnerella at the US National Library of Medicine Medical Subject Headings (MeSH)
  7. ^ Mahajan, GB (2012). "Antibacterial agents from actinomycetes - a review". Frontiers in Bioscience. 4: 240–53. doi:10.2741/e373. 
  8. ^ Gupte, M.; Kulkarni, P.; Ganguli, B.N. (2002). "Antifungal Antibiotics". Appl. Microbiol. Biotechnol. 58: 46–57. 
  9. ^ Bressan, W (2003). "Biological control of maize seed pathogenic fungi by use of actinomycetes". Biocontrol. 48 (2): 233–240. doi:10.1023/a:1022673226324. 
  10. ^ Atta, M.A (2009). Austral. J. Basic and Appl. Sci. 3: 126–135. 
  11. ^ Ventura, M.; Canchaya, C.; Tauch, A.; Chandra, G.; Fitzgerald, G. F.; Chater, K. F.; van Sinderen, D. (5 September 2007). "Genomics of Actinobacteria: Tracing the Evolutionary History of an Ancient Phylum". Microbiology and Molecular Biology Reviews. 71 (3): 495–548. doi:10.1128/MMBR.00005-07. PMC 2168647free to read. PMID 17804669. 
  12. ^ Ghai R, McMahon KD, Rodriguez-Valera F (2012). "Breaking a paradigm:cosmopolitan and abundant freshwater actinobacteria are low GC". Environmental Microbiology Reports. 4 (1): 29–35. doi:10.1111/j.1758-2229.2011.00274.x. PMID 23757226. 
  13. ^ Hayward D, van Helden PD, Wiid IJ (2009). "Glutamine synthetase sequence evolution in the mycobacteria and their use as molecular markers for Actinobacteria speciation". BMC Evol. Biol. 9: 48. doi:10.1186/1471-2148-9-48. PMC 2667176free to read. PMID 19245690. 
  14. ^ J.P. Euzéby. "Actinobacteria". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2011-11-17. 
  15. ^ Sayers; et al. "Actinobacteria". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2011-06-05. 
  16. ^ All-Species Living Tree Project."16S rRNA-based LTP release 106: full tree." (PDF). Retrieved 2011-11-17. 

Further reading[edit]

External links[edit]