Ajit Varki is a physician-scientist who is distinguished professor of medicine and cellular and molecular medicine, co-director of the Glycobiology Research and Training Center at the University of California, San Diego (UCSD), and co-director of the UCSD/Salk Center for Academic Research and Training in Anthropogeny (CARTA). He is also executive editor of the textbook Essentials of Glycobiology and Distinguished Visiting Professor at the Indian Institute of Technology in Madras and the National Center for Biological Sciences in Bangalore. He is a specialist advisor to the Human Gene Nomenclature Committee.
Education and biography
Varki went to the Bishop Cotton Boys' School, Bangalore, India during which time he was also strongly influenced by his maternal grandfather Pothan Joseph, a famous journalist and founding editor of many Indian newspapers, including Deccan Herald. He went on to receive basic training in physiology, medicine, biology, and biochemistry at the Christian Medical College, Vellore, continuing to maintain the first rank in his class throughout his schooling. He then did postgraduate training at the University of Nebraska and Washington University in St. Louis, USA, leading to board certification in internal medicine, hematology, and oncology. Following a postdoctoral fellowship with Stuart Kornfeld in St. Louis, he joined the faculty of UCSD in 1982. Significant past appointments include: associate dean for physician-scientist training, co-head, Division of Hematology/Oncology, UCSD (1987–89), the interim directorship of the UCSD Cancer Center (1996–97), scientific advisor to the Complex Carbohydrate Research Center (University of Georgia), the Yerkes Primate Center (Emory University), member of the National Advisory Committee of PubMed Central (NLM/NIH), and coordinator for the multidisciplinary UCSD Project for Explaining the Origin of Humans.
The research group led by Varki has made many contributions over the last few decades towards understanding the biological roles of the sugar chains or "glycans" found on all vertebrate cell surfaces and glycoproteins. In this field of Glycobiology, his present focus is on the Sialic Acids, which are found at the outermost position on such glycans, and which can be recognized by intrinsic receptors such as Selectins and the Siglecs (which he co-discovered and named as a sub-group of I-type Lectins), and also by the binding proteins of various pathogens. The group studies the significance of these interactions in biology, evolution and disease. A particular focus is on multiple differences in sialic acid biology between humans and our closest evolutionary cousins, the great apes. These represent unusual events that occurred during human evolution and are relevant to understanding aspects of human uniqueness in health and disease.
Varki has emphasized the key role of Physician-Scientists in the success of the US biomedical enterprise, and advocated for the support and preservation of this track at the national level. He also played a key role in advocating for a chimpanzee genome project, while emphasizing the need for ethical treatment of chimpanzees in research. He continues to advocate for and facilitate interactions amongst scientists with interests in explaining the origin of the human species. In this regard, he coined the term "Phenome", in the context of recommending a "Great Ape Phenome Project". While Editor-in-Chief of the Journal of Clinical Investigation, Varki made it the first major biomedical journal to be freely available on the web in 1996, presaging the general "Open Access" movement that came years later. He also created the first viable model for a major Open Access textbook, the 2nd. Edition of the textbook Essentials of Glycobiology. Varki is also very concerned about improving the support systems for women who pursue academic scientific careers, while also wishing to bear children. Varki and his wife Nissi enjoy entertaining, including a Christmas Carols celebration serving Tandoori goose.
While Editor-in-Chief of the Journal of Clinical Investigation, Varki made it the first major biomedical journal to be freely available on the web in 1996. Varki wrote, "The vexing issue of the day is how to appropriately charge users for this electronic access. The nonprofit nature of the JCI allows consideration of a truly novel solution — not to charge anyone at all!". As executive editor of Essentials of Glycobiology, Varki also made it the first major biomedical textbook that was fully open access.
Diet and disease
Varki's group has recently shown that a diet rich in red meat can result in accumulation of a non-human sialic acid molecule called Neu5Gc ("Gc") in the intestines and other tissues. This can allow type of dangerous E.coli toxin to affect the human body. Also, humans develop antibodies against this foreign Gc molecule, increasing the risk of diseases like cancer.
Varki is an elected member of the American Academy of Arts and Sciences, the Institute of Medicine, the American Society for Clinical Investigation, and the Association of American Physicians. He is recipient of a MERIT award from the NIH, an American Cancer Society Faculty Research Award, and the two highest honors in the field of glycobiology, the Karl Meyer Award of the Society for Glycobiology (2005) and the International Glycoconjugate Organization (IGO) Award (2007). He was also elected to serve as president of the Society for Glycobiology (1996), Editor-in-Chief of the Journal of Clinical Investigation (1992–97), and president of the American Society for Clinical Investigation (1998–99).
Beyond his primary research accomplishments, Varki has written many widely cited and influential review articles, commentaries and letters on a variety of topics. Some examples are listed below. His publications have been cited almost 40,000 times and he has an h-index of 99.
- Varki A, Holmes E, Yamada T, Agre P, Brenner S (April 2006). "Physician-scientists are needed now more than ever". Nature. 440 (7085): 740. doi:10.1038/440740b. PMID 16598232.
- Varki A (September 2006). "Nothing in glycobiology makes sense, except in the light of evolution". Cell. 126 (5): 841–5. doi:10.1016/j.cell.2006.08.022. PMID 16959563.
- Varki A, Angata T (January 2006). "Siglecs—the major subfamily of I-type lectins". Glycobiology. 16 (1): 1R–27R. doi:10.1093/glycob/cwj008. PMID 16014749.
- Varki A (April 2007). "Glycan-based interactions involving vertebrate sialic-acid-recognizing proteins". Nature. 446 (7139): 1023–9. doi:10.1038/nature05816. PMID 17460663.
- Crocker PR, Paulson JC, Varki A (April 2007). "Siglecs and their roles in the immune system". Nature Reviews Immunology. 7 (4): 255–66. doi:10.1038/nri2056. PMID 17380156.
- Varki Lab at UCSD
- Glycobiology Research and Training Center
- Center for Academic Research and Training in Anthropogeny
- "GRTC: About". United States: Glycobiology Research and Training Center. Archived from the original on February 13, 2012. Retrieved February 23, 2013.
- "Center for Academic Research Training in Anthropogeny (CARTA)". Carta.anthropogeny.org. Retrieved January 4, 2012.
- "Essentials of Glycobiology". Ncbi.nlm.nih.gov. October 3, 2011. Retrieved January 4, 2012.
- "UCSD Office of the Associate Dean for Physician-Scientist Training". Meded.ucsd.edu. Retrieved January 4, 2012.
- "San Diego Science Festival 2009 Nifty Fifty – Profile for Dr. Ajit Varki". Scholarnexus.com. May 23, 2007. Retrieved January 4, 2012.
- "Varki Lab Website". Cmm.ucsd.edu. Retrieved January 4, 2012.
- Bruce Lieberman. "Human evolution: Details of being human. By Bruce Lieberman. ''Nature News''. Published online 2 July 2008. Nature 454, 21–23 (2008)". Nature.com. doi:10.1038/454021a. Retrieved January 4, 2012.
- Varki Ajit; Rosenberg Leon E. "Emerging opportunities and career paths for the young physician-scientist". Nature Medicine. 8: 437–439. doi:10.1038/nm0502-437. PMID 11984577.
- Ajit Varki (August 1, 2000). "A Chimpanzee Genome Project Is a Biomedical Imperative. By Ajit Varki. ''Genome Res''. 2000. 10: 1065–1070". Genome.cshlp.org. doi:10.1101/gr.10.8.1065. Retrieved January 4, 2012.
- Gagneux Pascal; Moore James J.; Varki Ajit (September 2005). "The ethics of research on great apes". Nature. 437: 27–29. doi:10.1038/437027a. PMID 16136111.
- Varki, A; Wills, C; Perlmutter, D; et al. (October 9, 1998). "Great Ape Phenome Project?". Science. 282: 239d–239. doi:10.1126/science.282.5387.239d. PMID 9841385. Retrieved January 4, 2012.
- Savla U (2004). "Reflecting on 80 years of excellence". J. Clin. Invest. 114: 1006–16. doi:10.1172/JCI23290. PMC 522269. PMID 15489943.
- Savla, U (2004). "Reflecting on 80 years of excellence". J. Clin. Invest. 114: 1006–16. doi:10.1172/JCI23290. PMC 522269. PMID 15489943.
- Varki, A (1996). "The times they are still a'changing: keeping up with the times". J Clin Invest. 97 (1): 1–1. doi:10.1172/JCI118375. PMC 507053. PMID 8550819.
- Varki A, Cummings R, Esko J, Freeze H, Stanley P, Bertozzi C, Hart G, Etzler M (2008). Essentials of glycobiology. Essentials of Glycobiology (2nd ed.). Cold Spring Harbor Laboratory Press. ISBN 0-87969-770-9.
- Kain, Debra (October 29, 2008). "Eating Red Meat Sets Up Target for Disease-Causing Bacteria". Ucsdnews.ucsd.edu. Retrieved January 4, 2012.
- Kain, Debra (November 13, 2008). "How Eating Red Meat Can Spur Cancer Progression". Ucsdnews.ucsd.edu. Retrieved January 4, 2012.
- "Academy Elects 225th Class of Fellows and Foreign Honorary Members". Amacad.org. April 26, 2005. Retrieved January 4, 2012.
- "Institute of Medicine of the National Academies Directory – Ajit Varki". Iom.edu. Archived from the original on 2012-08-03. Retrieved January 4, 2012.
- "The American Society for Clinical Investigation Membership List". The-asci.org. Retrieved January 4, 2012.
- "New Initiative to Study the Glycobiology of Cancer Could Aid Understanding of Cancer Risk and Detection". Cancer.gov. August 22, 2007. Archived from the original on 2010-05-27. Retrieved January 4, 2012.
- "Karl Meyer Award Background and Past Winners". Glycobiology.org. Archived from the original on 2011-09-28. Retrieved January 4, 2012.
- "''UCSD News''. March 8, 2007. By Debra Kain. "UCSD's Ajit Varki to Receive Glycobiology's Highest International Honor"". Ucsdnews.ucsd.edu. March 8, 2007. Retrieved January 4, 2012.
- "Society for Glycobiology: Committees: Past Presidents". Glycobiology.org. Archived from the original on 2011-12-23. Retrieved January 4, 2012.
- Insel PA, Kornfeld S, Majerus PW, Marks AR, Marks PA, Relman AS, Scharschmidt BF, Stossel TP, Varki AP, Weiss SJ, Wilson JD (October 15, 2004). "Historical Highlights: Blasts from the past". Journal of Clinical Investigation. 114: 1017–1033. doi:10.1172/JCI23321. PMC 522273. PMID 15489944. Retrieved January 4, 2012.
- "American Society for Clinical Investigation Council History". The-asci.org. Retrieved January 4, 2012.
- "Jorge Hirsch's research and public service page". Physics.ucsd.edu. Retrieved January 4, 2012.