Degeneracy (graph theory)
In graph theory, a k-degenerate graph is an undirected graph in which every subgraph has a vertex of degree at most k: that is, some vertex in the subgraph touches k or fewer of the subgraph's edges. The degeneracy of a graph is the smallest value of k for which it is k-degenerate. The degeneracy of a graph is a measure of how sparse it is, and is within a constant factor of other sparsity measures such as the arboricity of a graph.
Degeneracy is also known as the k-core number, width, and linkage, and is essentially the same as the coloring number or Szekeres–Wilf number (named after Szekeres and Wilf (1968)). k-degenerate graphs have also been called k-inductive graphs. The degeneracy of a graph may be computed in linear time by an algorithm that repeatedly removes minimum-degree vertices. The connected components that are left after all vertices of degree less than k have been (repeatedly) removed are called the k-cores of the graph and the degeneracy of a graph is the largest value k such that it has a k-core.
Every finite forest has either an isolated vertex (incident to no edges) or a leaf vertex (incident to exactly one edge); therefore, trees and forests are 1-degenerate graphs. Every 1-degenerate graph is a forest.
Every finite planar graph has a vertex of degree five or less; therefore, every planar graph is 5-degenerate, and the degeneracy of any planar graph is at most five. Similarly, every outerplanar graph has degeneracy at most two, and the Apollonian networks have degeneracy three.
The Barabási–Albert model for generating random scale-free networks is parameterized by a number m such that each vertex that is added to the graph has m previously-added vertices. It follows that any subgraph of a network formed in this way has a vertex of degree at most m (the last vertex in the subgraph to have been added to the graph) and Barabási–Albert networks are automatically m-degenerate.
Every k-regular graph has degeneracy exactly k. More strongly, the degeneracy of a graph equals its maximum vertex degree if and only if at least one of the connected components of the graph is regular of maximum degree. For all other graphs, the degeneracy is strictly less than the maximum degree.
Definitions and equivalences
The coloring number of a graph G was defined by Erdős & Hajnal (1966) to be the least κ for which there exists an ordering of the vertices of G in which each vertex has fewer than κ neighbors that are earlier in the ordering. It should be distinguished from the chromatic number of G, the minimum number of colors needed to color the vertices so that no two adjacent vertices have the same color; the ordering which determines the coloring number provides an order to color the vertices of G with the coloring number, but in general the chromatic number may be smaller.
The degeneracy of a graph G was defined by Lick & White (1970) as the least k such that every induced subgraph of G contains a vertex with k or fewer neighbors. The definition would be the same if arbitrary subgraphs are allowed in place of induced subgraphs, as a non-induced subgraph can only have vertex degrees that are smaller than or equal to the vertex degrees in the subgraph induced by the same vertex set.
The two concepts of coloring number and degeneracy are equivalent: in any finite graph the degeneracy is just one less than the coloring number. For, if a graph has an ordering with coloring number κ then in each subgraph H the vertex that belongs to H and is last in the ordering has at most κ − 1 neighbors in H. In the other direction, if G is k-degenerate, then an ordering with coloring number k + 1 can be obtained by repeatedly finding a vertex v with at most k neighbors, removing v from the graph, ordering the remaining vertices, and adding v to the end of the order.
A third, equivalent formulation is that G is k-degenerate (or has coloring number at most k + 1) if and only if the edges of G can be oriented to form a directed acyclic graph with outdegree at most k. Such an orientation can be formed by orienting each edge towards the earlier of its two endpoints in a coloring number ordering. In the other direction, if an orientation with outdegree k is given, an ordering with coloring number k + 1 can be obtained as a topological ordering of the resulting directed acyclic graph.
A k-core of a graph G is a maximal connected subgraph of G in which all vertices have degree at least k. Equivalently, it is one of the connected components of the subgraph of G formed by repeatedly deleting all vertices of degree less than k. If a non-empty k-core exists, then, clearly, G has degeneracy at least k, and the degeneracy of G is the largest k for which G has a k-core.
A vertex has coreness if it belongs to a -core but not to any -core.
The concept of a k-core was introduced to study the clustering structure of social networks and to describe the evolution of random graphs. It has also been applied in bioinformatics, network visualization, and resilience of networks in ecology. A survey of the topic, covering the main concepts, important algorithmic techniques as well as some application domains, may be found in Malliaros et al. (2019).
Bootstrap percolation is a random process studied as an epidemic model and as a model for fault tolerance for distributed computing. It consists of selecting a random subset of active cells from a lattice or other space, and then considering the k-core of the induced subgraph of this subset.
Matula & Beck (1983) outline an algorithm to derive the degeneracy ordering of a graph with vertex set V and edge set E in time and space, by storing vertices in a degree-indexed bucket queue and repeatedly removing the vertex with the smallest degree. The degeneracy k is given by the highest degree of any vertex at the time of its removal.
In more detail, the algorithm proceeds as follows:
- Initialize an output list L.
- Compute a number dv for each vertex v in G, the number of neighbors of v that are not already in L. Initially, these numbers are just the degrees of the vertices.
- Initialize an array D such that D[i] contains a list of the vertices v that are not already in L for which dv = i.
- Initialize k to 0.
- Repeat n times:
- Scan the array cells D, D, ... until finding an i for which D[i] is nonempty.
- Set k to max(k,i)
- Select a vertex v from D[i]. Add v to the beginning of L and remove it from D[i].
- For each neighbor w of v not already in L, subtract one from dw and move w to the cell of D corresponding to the new value of dw.
At the end of the algorithm, any vertex will have at most k edges to the vertices . The l-cores of G are the subgraphs that are induced by the vertices , where i is the first vertex with degree at the time it is added to L.
Relation to other graph parameters
If a graph G is oriented acyclically with outdegree k, then its edges may be partitioned into k forests by choosing one forest for each outgoing edge of each node. Thus, the arboricity of G is at most equal to its degeneracy. In the other direction, an n-vertex graph that can be partitioned into k forests has at most k(n − 1) edges and therefore has a vertex of degree at most 2k− 1 – thus, the degeneracy is less than twice the arboricity. One may also compute in polynomial time an orientation of a graph that minimizes the outdegree but is not required to be acyclic. The edges of a graph with such an orientation may be partitioned in the same way into k pseudoforests, and conversely any partition of a graph's edges into k pseudoforests leads to an outdegree-k orientation (by choosing an outdegree-1 orientation for each pseudoforest), so the minimum outdegree of such an orientation is the pseudoarboricity, which again is at most equal to the degeneracy. The thickness is also within a constant factor of the arboricity, and therefore also of the degeneracy.
A k-degenerate graph has chromatic number at most k + 1; this is proved by a simple induction on the number of vertices which is exactly like the proof of the six-color theorem for planar graphs. Since chromatic number is an upper bound on the order of the maximum clique, the latter invariant is also at most degeneracy plus one. By using a greedy coloring algorithm on an ordering with optimal coloring number, one can graph color a k-degenerate graph using at most k + 1 colors.
A k-vertex-connected graph is a graph that cannot be partitioned into more than one component by the removal of fewer than k vertices, or equivalently a graph in which each pair of vertices can be connected by k vertex-disjoint paths. Since these paths must leave the two vertices of the pair via disjoint edges, a k-vertex-connected graph must have degeneracy at least k. Concepts related to k-cores but based on vertex connectivity have been studied in social network theory under the name of structural cohesion.
If a graph has treewidth or pathwidth at most k, then it is a subgraph of a chordal graph which has a perfect elimination ordering in which each vertex has at most k earlier neighbors. Therefore, the degeneracy is at most equal to the treewidth and at most equal to the pathwidth. However, there exist graphs with bounded degeneracy and unbounded treewidth, such as the grid graphs.
The Burr–Erdős conjecture relates the degeneracy of a graph G to the Ramsey number of G, the least n such that any two-edge-coloring of an n-vertex complete graph must contain a monochromatic copy of G. Specifically, the conjecture is that for any fixed value of k, the Ramsey number of k-degenerate graphs grows linearly in the number of vertices of the graphs. The conjecture was proven by Lee (2017).
Although concepts of degeneracy and coloring number are frequently considered in the context of finite graphs, the original motivation for Erdős & Hajnal (1966) was the theory of infinite graphs. For an infinite graph G, one may define the coloring number analogously to the definition for finite graphs, as the smallest cardinal number α such that there exists a well-ordering of the vertices of G in which each vertex has fewer than α neighbors that are earlier in the ordering. The inequality between coloring and chromatic numbers holds also in this infinite setting; Erdős & Hajnal (1966) state that, at the time of publication of their paper, it was already well known.
- Bader & Hogue (2003).
- Freuder (1982).
- Kirousis & Thilikos (1996).
- Erdős & Hajnal (1966).
- Irani (1994).
- Matula & Beck (1983).
- Lick & White (1970).
- Barabási & Albert (1999).
- Jensen & Toft (2011), p. 78: "It is easy to see that col(G) = Δ(G) + 1 if and only if G has a Δ(G)-regular component." In the notation used by Jensen and Toft, col(G) is the degeneracy plus one, and Δ(G) is the maximum vertex degree.
- Matula (1968); Lick & White (1970), Proposition 1, page 1084.
- Chrobak & Eppstein (1991).
- Seidman (1983).
- Bollobás (1984); Łuczak (1991);Dorogovtsev, Goltsev & Mendes (2006).
- Bader & Hogue (2003); Altaf-Ul-Amin et al. (2003); Wuchty & Almaas (2005).
- Gaertler & Patrignani (2004); Alvarez-Hamelin et al. (2006).
- Garcia-Algarra et al. (2017).
- Balogh et al. (2012).
- Kirkpatrick et al. (2002).
- Adler (1991).
- Chrobak & Eppstein (1991); Gabow & Westermann (1992); Venkateswaran (2004); Asahiro et al. (2006); Kowalik (2006).
- Dean, Hutchinson & Scheinerman (1991).
- Erdős & Hajnal (1966); Szekeres & Wilf (1968).
- Moody & White (2003).
- Robertson & Seymour (1984).
- Burr & Erdős (1975).
- Adler, Joan (1991), "Bootstrap percolation", Physica A: Statistical Mechanics and its Applications, 171 (3): 453–470, Bibcode:1991PhyA..171..453A, doi:10.1016/0378-4371(91)90295-n
- Altaf-Ul-Amin, M.; Nishikata, K.; Koma, T.; Miyasato, T.; Shinbo, Y.; Arifuzzaman, M.; Wada, C.; Maeda, M.; Oshima, T. (2003), "Prediction of protein functions based on k-cores of protein-protein interaction networks and amino acid sequences" (PDF), Genome Informatics, 14: 498–499, archived from the original (PDF) on 2007-09-27
- Alvarez-Hamelin, José Ignacio; Dall'Asta, Luca; Barrat, Alain; Vespignani, Alessandro (2006), "k-core decomposition: a tool for the visualization of large scale networks", in Weiss, Yair; Schölkopf, Bernhard; Platt, John (eds.), Advances in Neural Information Processing Systems 18: Proceedings of the 2005 Conference, vol. 18, The MIT Press, p. 41, arXiv:cs/0504107, Bibcode:2005cs........4107A, ISBN 0262232537
- Asahiro, Yuichi; Miyano, Eiji; Ono, Hirotaka; Zenmyo, Kouhei (2006), "Graph orientation algorithms to minimize the maximum outdegree", CATS '06: Proceedings of the 12th Computing: The Australasian Theory Symposium, Darlinghurst, Australia, Australia: Australian Computer Society, Inc., pp. 11–20, ISBN 1-920682-33-3
- Bader, Gary D.; Hogue, Christopher W. V. (2003), "An automated method for finding molecular complexes in large protein interaction networks", BMC Bioinformatics, 4 (1): 2, doi:10.1186/1471-2105-4-2, PMC 149346, PMID 12525261
- Balogh, József; Bollobás, Béla; Duminil-Copin, Hugo; Morris, Robert (2012), "The sharp threshold for bootstrap percolation in all dimensions", Transactions of the American Mathematical Society, 364 (5): 2667–2701, arXiv:1010.3326, doi:10.1090/S0002-9947-2011-05552-2, MR 2888224, S2CID 2708046
- Barabási, Albert-László; Albert, Réka (1999), "Emergence of scaling in random networks" (PDF), Science, 286 (5439): 509–512, arXiv:cond-mat/9910332, Bibcode:1999Sci...286..509B, doi:10.1126/science.286.5439.509, PMID 10521342, S2CID 524106, archived from the original (PDF) on 2006-11-11
- Bollobás, Béla (1984), "The evolution of sparse graphs", Graph Theory and Combinatorics, Proc. Cambridge Combinatorial Conf. in honor of Paul Erdős, Academic Press, pp. 35–57
- Burr, Stefan A.; Erdős, Paul (1975), "On the magnitude of generalized Ramsey numbers for graphs", Infinite and finite sets (Colloq., Keszthely, 1973; dedicated to P. Erdős on his 60th birthday), Vol. 1 (PDF), Colloq. Math. Soc. János Bolyai, vol. 10, Amsterdam: North-Holland, pp. 214–240, MR 0371701
- Chrobak, Marek; Eppstein, David (1991), "Planar orientations with low out-degree and compaction of adjacency matrices" (PDF), Theoretical Computer Science, 86 (2): 243–266, doi:10.1016/0304-3975(91)90020-3
- Dean, Alice M.; Hutchinson, Joan P.; Scheinerman, Edward R. (1991), "On the thickness and arboricity of a graph", Journal of Combinatorial Theory, Series B, 52 (1): 147–151, doi:10.1016/0095-8956(91)90100-X, MR 1109429
- Dorogovtsev, S. N.; Goltsev, A. V.; Mendes, J. F. F. (2006), "k-core organization of complex networks", Physical Review Letters, 96 (4): 040601, arXiv:cond-mat/0509102, Bibcode:2006PhRvL..96d0601D, doi:10.1103/PhysRevLett.96.040601, PMID 16486798, S2CID 2035
- Erdős, Paul; Hajnal, András (1966), "On chromatic number of graphs and set-systems" (PDF), Acta Mathematica Hungarica, 17 (1–2): 61–99, doi:10.1007/BF02020444, MR 0193025
- Freuder, Eugene C. (1982), "A sufficient condition for backtrack-free search", Journal of the ACM, 29 (1): 24–32, doi:10.1145/322290.322292, S2CID 8624975
- Gabow, H. N.; Westermann, H. H. (1992), "Forests, frames, and games: algorithms for matroid sums and applications", Algorithmica, 7 (1): 465–497, doi:10.1007/BF01758774, S2CID 40358357
- Gaertler, Marco; Patrignani, Maurizio (2004), "Dynamic analysis of the autonomous system graph", Proc. 2nd International Workshop on Inter-Domain Performance and Simulation (IPS 2004), pp. 13–24, CiteSeerX 10.1.1.81.6841
- Garcia-Algarra, Javier; Pastor, Juan Manuel; Iriondo, Jose Maria; Galeano, Javier (2017), "Ranking of critical species to preserve the functionality of mutualistic networks using the k-core decomposition", PeerJ, 5: e3321, doi:10.7717/peerj.3321, PMC 5438587, PMID 28533969
- Irani, Sandy (1994), "Coloring inductive graphs on-line", Algorithmica, 11 (1): 53–72, doi:10.1007/BF01294263, S2CID 181800
- Jensen, Tommy R.; Toft, Bjarne (2011), Graph Coloring Problems, Wiley Series in Discrete Mathematics and Optimization, vol. 39, John Wiley & Sons, ISBN 9781118030745
- Kirkpatrick, Scott; Wilcke, Winfried W.; Garner, Robert B.; Huels, Harald (2002), "Percolation in dense storage arrays", Physica A: Statistical Mechanics and its Applications, 314 (1–4): 220–229, Bibcode:2002PhyA..314..220K, doi:10.1016/S0378-4371(02)01153-6, MR 1961703
- Kirousis, L. M.; Thilikos, D. M. (1996), "The linkage of a graph" (PDF), SIAM Journal on Computing, 25 (3): 626–647, doi:10.1137/S0097539793255709, archived from the original (PDF) on 2011-07-21
- Kowalik, Łukasz (2006), "Approximation scheme for lowest outdegree orientation and graph density measures", Proceedings of the 17th International Symposium on Algorithms and Computation (ISAAC 2006), Lecture Notes in Computer Science, Springer-Verlag, 4288: 557–566, doi:10.1007/11940128_56, ISBN 978-3-540-49694-6
- Lee, Choongbum (2017), "Ramsey numbers of degenerate graphs", Annals of Mathematics, 185 (3): 791–829, arXiv:1505.04773, doi:10.4007/annals.2017.185.3.2, S2CID 7974973
- Lick, Don R.; White, Arthur T. (1970), "k-degenerate graphs", Canadian Journal of Mathematics, 22 (5): 1082–1096, doi:10.4153/CJM-1970-125-1
- Łuczak, Tomasz (1991), "Size and connectivity of the k-core of a random graph", Discrete Mathematics, 91 (1): 61–68, doi:10.1016/0012-365X(91)90162-U
- Malliaros, Fragkiskos D.; Giatsidis, Christos; Papadopoulos, Apostolos N.; Vazirgiannis, Michalis (2019), "The core decomposition of networks: theory, algorithms and applications" (PDF), The VLDB Journal, 29: 61–92, doi:10.1007/s00778-019-00587-4, S2CID 85519668
- Matula, David W. (1968), "A min-max theorem for graphs with application to graph coloring", SIAM 1968 National Meeting, SIAM Review, 10 (4): 481–482, doi:10.1137/1010115
- Matula, David W.; Beck, L. L. (1983), "Smallest-last ordering and clustering and graph coloring algorithms", Journal of the ACM, 30 (3): 417–427, doi:10.1145/2402.322385, MR 0709826, S2CID 4417741
- Moody, James; White, Douglas R. (2003), "Structural cohesion and embeddedness: a hierarchical conception of social groups", American Sociological Review, 68 (1): 1–25, doi:10.2307/3088904, JSTOR 3088904
- Robertson, Neil; Seymour, Paul (1984), "Graph minors. III. Planar tree-width", Journal of Combinatorial Theory, Series B, 36 (1): 49–64, doi:10.1016/0095-8956(84)90013-3
- Seidman, Stephen B. (1983), "Network structure and minimum degree", Social Networks, 5 (3): 269–287, doi:10.1016/0378-8733(83)90028-X
- Szekeres, George; Wilf, Herbert S. (1968), "An inequality for the chromatic number of a graph", Journal of Combinatorial Theory, 4: 1–3, doi:10.1016/S0021-9800(68)80081-X
- Venkateswaran, V. (2004), "Minimizing maximum indegree", Discrete Applied Mathematics, 143 (1–3): 374–378, doi:10.1016/j.dam.2003.07.007
- Wuchty, S.; Almaas, E. (2005), "Peeling the yeast protein network", Proteomics, 5 (2): 444–449, doi:10.1002/pmic.200400962, PMID 15627958, S2CID 17659720