Environment Modules (software)

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Environment Modules
Stable release
3.2.10 / December 21, 2012; 4 years ago (2012-12-21)
Operating system Unix-like
License GNU General Public License#Version 2
Website modules.sourceforge.net

The Environment Modules system is a tool to help users manage their Unix or Linux shell environment, by allowing groups of related environment-variable settings to be made or removed dynamically.

Modules has been around since the early 1990s[1] and is used at some of the largest computer centers[2] to deploy multiple versions of different software tools to users. The National Energy Research Scientific Computing Center (NERSC) reports that they use Environment Modules to manage nearly all software.[3] Environment Modules is specified as a Baseline Configuration requirement of the DoD High Performance Computing Modernization Program (HPCMP)[4] Project Baseline Configuration[5] team for participating DoD Supercomputing Resource Centers (DSRCs).

modulefiles[edit]

The modules system is based on modulefiles,[6] which specify groups of environment settings that need to be made together. Modulefiles can be installed in a central location for general use, or in a user directory for personal use. Environment Modules modulefiles are written in the Tcl (Tool Command Language) and are interpreted by the modulecmd program via the module[7] user interface.

The key advantage of Environment Modules is that it is shell independent and supports all major shells such as bash, ksh, zsh, sh, tcsh, and csh. The second key advantage is that it allows to use multiple versions of the program or package from the same account by just loading proper module. Those two advantages were instrumental in making Environment Modules a part of most HPC cluster setups. It also inspired several alternative implementation such as lmod from University of Texas, which is written in Lua instead of TCL.

modulefiles are created on per application per version basis. They can be dynamically loaded, unloaded, or switched. Along with the capability of using multiple versions of the same software it also can be used to implement site policies regarding the access and use of applications.

default modulefiles directory[edit]

The default modules search path is in a hidden configuration file you can display with:

$ cat ${MODULESHOME}/init/.modulespath
/etc/modulefiles # CentOS, Scientific Linux, RHEL
/usr/local/Modules/modulefiles # Build from source default

The /etc/modulefiles directory used by some distributions (or any other directory) can be used after a build from source by modifying the ${MODULESHOME}/init/.modulespath file.

Add your own modules to the path[edit]

The ${MODULESHOME}/modulefiles/use.own module essentially performs these steps.

 mkdir $HOME/privatemodules
 cp ${MODULESHOME}/modulefiles/null $HOME/privatemodules
 module use --append $HOME/privatemodules

Use a version file within a hierarchical organization[edit]

The commands in this section require read/write/execute access to the /etc/modulefiles directory. The $HOME/privatemodules or another directory can be used instead along with "module use --append" or modification of the configuration file specifying the default modules search path.

The default modulefiles directory is empty initially. Copy the null module to the default modulefiles directory to have it shown by "module avail". The following uses the null and module-info modules to show use of a version file within a hierarchical organization and their effect on module avail and module show:

 mkdir /etc/modulefiles/test
 cp ${MODULESHOME}/modulefiles/null /etc/modulefiles/test/2.0
 cp ${MODULESHOME}/modulefiles/module-info /etc/modulefiles/test/1.0
 module avail
 module show test

Set the first version as the default:

 echo '#%Module' > /etc/modulefiles/test/.version
 echo 'set ModulesVersion "1.0"' >> /etc/modulefiles/test/.version
 module avail
 module show test
 module show test/2.0

Switch to the newer version as the default with:

 rm /etc/modulefiles/test/.version
 echo '#%Module' > /etc/modulefiles/test/.version
 echo 'set ModulesVersion "2.0"' >> /etc/modulefiles/test/.version
 module avail
 module show test

After the above following a fresh install from source you would see:

$ module avail

-------------------- /usr/local/Modules/3.2.10/modulefiles ---------------------
dot         module-git  module-info modules     null        use.own

------------------------------- /etc/modulefiles -------------------------------
null              test/1.0          test/2.0(default)

--------------------------- /home/user/privatemodules --------------------------
null

$ module show test
-------------------------------------------------------------------
/etc/modulefiles/test/2.0:

module-whatis    does absolutely nothing 
-------------------------------------------------------------------

$ module show test/1.0
-------------------------------------------------------------------
/etc/modulefiles/test/1.0:

module-whatis    returns all various module-info values 
+++ module-info +++++++++++++++++++++++++++++++
flags                   = 2
mode                    = display
name                    = test/1.0
specified               = test/1.0
shell                   = bash
shelltype               = sh
version                 = test/1.0
user                    = advanced
trace                   = 0
tracepat                = -.*
symbols                 = *undef*
+++ info ++++++++++++++++++++++++++++++++++++++
hostname                = localhost
level                   = 1
loaded null             = 0
library                 = /usr/local/lib/tcl8.6
nameofexecutable        =
sharedlibextension      = .so
tclversion              = 8.6
patchlevel              = 8.6.1
+++++++++++++++++++++++++++++++++++++++++++++++
-------------------------------------------------------------------

Automatic modules initialization[edit]

Environment Modules on Scientific Linux, CentOS, and RHEL distributions in the environment-modules package include modules.csh and modules.sh scripts for the /etc/profile.d directory that make modules initialization part of the default shell initialization. One of the advantages of Environment Modules is a single modulefile that supports bash, ksh, zsh, sh as well as tcsh and csh shell users for environment setup and initialization. This makes managing complex environments a bit less complicated.

For a source build the automation for all users can be manually configured.

bash, ksh, zsh, sh automatic modules initialization[edit]

/etc/profile.d/modules.sh from the etc/global/profile.modules file in the 3.2.10 modules build directory.

 trap "" 1 2 3
 
 case "$0" in
     -bash|bash|*/bash) . /usr/local/Modules/default/init/bash ;; 
        -ksh|ksh|*/ksh) . /usr/local/Modules/default/init/ksh ;; 
        -zsh|zsh|*/zsh) . /usr/local/Modules/default/init/zsh ;;
                     *) . /usr/local/Modules/default/init/sh ;; # default
 esac
 
 trap 1 2 3

Copy the etc/global/profile.modules file from the 3.2.10 modules build directory to the system initialization directory:

sudo cp etc/global/profile.modules /etc/profile.d/modules.sh

Add a version 3.2.10 symbolic link for the above generic addresses:

cd /usr/local/Modules
sudo ln -sT 3.2.10 default

tcsh, csh automatic modules initialization[edit]

A /etc/profile.d/modules.csh symbolic link to the etc/global/profile.modules file in the 3.2.10 modules build directory can enable automatic modules initialization for these users.

Installing[edit]

Installing Environment Modules on Linux using yum[edit]

On Scientific Linux, CentOS, and RHEL distributions Environment Modules is in the environment-modules package which can be installed with:

sudo yum install environment-modules

On Ubuntu or systems using apt-get, Environment Modules can be installed with:

sudo apt-get install environment-modules

Once installed the package information can be viewed with:

rpm -qi environment-modules
rpm -ql environment-modules

Installing Environment Modules on Linux from source[edit]

Although installing from a Linux distributions repository using that distributions update manager is the easiest the software can be installed from source. Resolve dependencies is the most difficult task for an installation from source. The typical configure, make, install cycle can become painfully slow as each configure improvement reveals another dependency not available in your default environment. This section includes the steps to install the Environment Modules package on source including compiling the Tcl (Tool Command Language) from source as a dependency.

8.6.1 version of Tcl (Tool Command Language) built from /usr/local/src[edit]

Although the PCLinuxOS 64-bit repositories include Tcl (Tool Command Language) they do not include a development package with the configuration files required to build Environment Modules on Linux from source. Building Tcl from source will make the required files available.

Tcl Source: http://sourceforge.net/projects/tcl/files/Tcl/

Extract source after downloading

 cd /usr/local/src
 tar -xvzf ~/Downloads/tcl8.6.1-src.tar.gz

Configure, make, install

 cd /usr/local/src/tcl8.6.1
 unix/configure
 make
 sudo make install

3.2.10 version of modules built from /usr/local/src[edit]

Extract source after downloading

 cd /usr/local/src
 tar -xvzf ~/Downloads/modules-3.2.10.tar.gz

Configure, make, install

cd /usr/local/src/modules-3.2.10
CPPFLAGS="-DUSE_INTERP_ERRORLINE" ./configure
make
sudo make install

See also[edit]

References[edit]

  1. ^ Furlani, John L. (September 30 – October 3, 1991). "Modules: Providing a Flexible User Environment" (PDF). Proceedings of the Fifth Large Installation Systems Administration Conference (LISA V). San Diego, CA: 141–152. Retrieved 9 February 2014. 
  2. ^ "NICS User Support Kraken Modules Description". The National Institute for Computational Sciences (NICS). Oak Ridge National Laboratory - Department of Energy. 22 May 2011. Archived from the original on 22 February 2014. Retrieved 9 February 2014. 
  3. ^ "NERSC Modules Software Environment". The National Energy Research Scientific Computing Center (NERSC). Office of Science - Department of Energy. 2014-02-07. Retrieved 19 February 2014. 
  4. ^ "Use of Modules for Accessing Multiple Versions of Software". Baseline Configuration. DoD High Performance Computing Modernization Program (HPCMP). 20 Mar 2008. Archived from the original on 22 February 2014. Retrieved 9 February 2014. 
  5. ^ "DoD High Performance Computing Modernization Program Baseline Configuration". Baseline Configuration. DoD High Performance Computing Modernization Program (HPCMP). Archived from the original on 22 February 2014. Retrieved 9 February 2014. 
  6. ^ John L. Furlani & Peter W. Osel (July 2009). "modulefile - files containing Tcl code for the Modules package". SourceForge. man page. Retrieved 9 February 2014. 
  7. ^ John L. Furlani & Peter W. Osel (July 2009). "module - command interface to the Modules package". SourceForge. man page. Retrieved 9 February 2014. 

External links[edit]

  1. http://modules.sourceforge.net/ - home page for the Environment Modules project
  2. John L. Furlani, Modules: Providing a Flexible User Environment Proceedings of the Fifth Large Installation Systems Administration Conference (LISA V), pp. 141–152, San Diego, CA, September 30 - October 3, 1991.
  3. http://lmod.sourceforge.net - alternative implementation using LUA instead of Tcl
  4. http://www.lysator.liu.se/cmod/ - alternative implementation using C only
  5. PennState Environment Modules User Guide
  6. Drag your design environment kicking and screaming into the '90s with Modules! - SNUB Boston 2001 - Erich Whitney, Axiowave Networks, Mark Sprague, ATI Research