Gene Expression Omnibus

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Gene Expression Omnibus
US-NLM-NCBI-Logo.svg
Content
DescriptionGene expression profiling and RNA methylation database
Contact
Research centerNational Center for Biotechnology Information
Primary citationEdgar R & al. (2002)[1]
Access
Websitehttps://www.ncbi.nlm.nih.gov/gds/?term=

Gene Expression Omnibus (GEO) is a database for gene expression profiling and RNA methylation profiling managed by the National Center for Biotechnology Information (NCBI).[1] These high-throughput screening genomics data are derived from microarray or RNA-Seq experimental data.[2] These data need to conform to the minimum information about a microarray experiment (MIAME) format.[3]

Glossary[edit]

Abbreviation Description
GDS DataSet accession
GPL Platform accession
GSE Series accession
GSM Sample accession

References[edit]

  1. ^ a b Edgar, R; Domrachev, M; Lash, AE (1 January 2002). "Gene Expression Omnibus: NCBI gene expression and hybridization array data repository". Nucleic Acids Research. 30 (1): 207–10. doi:10.1093/nar/30.1.207. PMC 99122. PMID 11752295.
  2. ^ Barrett, T; Wilhite, SE; Ledoux, P; Evangelista, C; Kim, IF; Tomashevsky, M; Marshall, KA; Phillippy, KH; Sherman, PM; Holko, M; Yefanov, A; Lee, H; Zhang, N; Robertson, CL; Serova, N; Davis, S; Soboleva, A (January 2013). "NCBI GEO: archive for functional genomics data sets--update". Nucleic Acids Research. 41 (Database issue): D991-5. doi:10.1093/nar/gks1193. PMC 3531084. PMID 23193258.
  3. ^ Brazma, A; Hingamp, P; Quackenbush, J; Sherlock, G; Spellman, P; Stoeckert, C; Aach, J; Ansorge, W; Ball, CA; Causton, HC; Gaasterland, T; Glenisson, P; Holstege, FC; Kim, IF; Markowitz, V; Matese, JC; Parkinson, H; Robinson, A; Sarkans, U; Schulze-Kremer, S; Stewart, J; Taylor, R; Vilo, J; Vingron, M (December 2001). "Minimum information about a microarray experiment (MIAME)-toward standards for microarray data". Nature Genetics. 29 (4): 365–71. doi:10.1038/ng1201-365. PMID 11726920. S2CID 6994467.