Haplogroup J (Y-DNA)
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|Possible time of origin||48,000 years ago|
|Possible place of origin||Western Asia|
|Defining mutations||M304/Page16/PF4609, 12f2.1|
Haplogroup J-M304[Phylogenetics 1] is a Y-chromosome DNA haplogroup. It is believed to have evolved in Western Asia. The clade spread from there during the Neolithic, primarily into North Africa, the Horn of Africa, Socotra, the Caucasus, Southeast Europe, Central Asia, Iran, Pakistan and western India.
- 1 Origins
- 2 Distribution
- 3 Phylogenetics
- 4 See also
- 5 References
- 6 External links
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Haplogroup J-M304 is believed to have arisen roughly 48,000 years ago in Western Asia. It is most closely related to Haplogroup I-M170, as both lineages are haplogroup IJ subclades. Haplogroup IJ and haplogroup K derive from Haplogroup IJK, and only at this level of classification does haplogroup IJK join with Haplogroup G-M201 and Haplogroup H as immediate descendants of Haplogroup F-M89. J-M304 is defined by the M304 genetic marker, or the equivalent 12f2.1 marker. According to a genetic study in China by Shou et al., J*-M304 is found among the Sibe people, Kazakhs, Dongxiangs and Uzbeks in Northwest China. The main current subgroups J-M267 and J-M172, which now comprise between them almost all of the population of the haplogroup, are both believed to have arisen very early, at least 10,000 years ago. Nonetheless, Y-chromosomes F-M89* and IJ-M429* were reported to have been observed in the Iranian plateau (Grugni et al. 2012).
On the other hand, it would seem to be that different episodes of populace movement had impacted southeast Europe, as well as the role of the Balkans as a long-standing corridor to Europe from the Near East is shown by the phylogenetic unification of Hgs I and J by the basal M429 mutation. This proof of common ancestry suggests that ancestral Hgs IJ-M429* probably would have entered Europe through the Balkan track sometime before the LGM. They then subsequently split into Hg J and Hg I in Middle East and Europe in a typical disjunctive phylogeographic pattern. Such a geographic hall[clarification needed] is prone to have encountered extra consequent gene streams, including the horticultural settlers. Moreover, the unification of haplogroups IJK creates evolutionary distance from F–H delegates, as well as supporting the inference that both IJ-M429 and KT-M9 arose closer to the Middle East than central or eastern Asia.
Haplogroup J-M304 is found in its greatest concentration in the Arabian peninsula. Outside of this region, haplogroup J-M304 has a significant presence in North Africa and the Horn of Africa. It also has a moderate occurrence in Southern Europe, especially in central and southern Italy, Malta, Greece and Albania. The J-M410 subclade is mostly distributed in Anatolia, Greece and southern Italy. Additionally, J-M304 is observed in Central Asia and South Asia, particularly in the form of its subclade J-M172. J-12f2 and J-P19 are also found among the Herero (8%).
|India||Iraqi Biradari||112||32||43.2||75.2||El-Sibai 2009|
|Iraq||Arab, Assyrian, Mandean||117||33.1||25.1||58.2||El-Sibai 2009|
|Italy||Central Marche||59||5.1||35.6||40.7||Capelli 2007|
|Italy||West Calabria||57||3.5||35.1||38.6||Capelli 2007|
|Morocco||Residents in Italy||51||19.6||0||19.6||Onofri 2008|
|Syria||Arab, Assyrian||554||33.6||20.8||54.4||El-Sibai 2009|
Paragroup J-M304*[Phylogenetics 2] includes all of J-M304 except for J-M267, J-M172 and their subclades. J-M304* is rarely found outside of the island of Socotra, off the coast of Yemen, where it is quite frequent at 71.4%. Haplogroup J-M304* also has been found with lower frequency in Oman (Giacomo 2004), Ashkenazi Jews, Saudi Arabia (Abu-Amero 2009), Greece (Giacomo 2004), the Czech Republic (Giacomo 2004 and Luca 2007), Uygurs  and several Turkic peoples. (Cinnioglu 2004 and Varzari 2006).
The following gives a summary of most of the studies which specifically tested for J-M267 and J-M172, showing its distribution in Europe, North Africa, the Middle East and Central Asia.
Haplogroup J-M267[Phylogenetics 3] defined by the M267 SNP is in modern times most frequent in the Arabian Peninsula: Yemen (up to 76%), Saudi (up to 64%) (Alshamali 2009), Qatar (58%), and Dagestan (up to 56%). J-M267 is generally frequent among Arab Bedouins (62%), Ashkenazi Jews (20%) (Semino 2004), Algeria (up to 35%) (Semino 2004), Iraq (up to 33%) (Semino 2004), Tunisia (up to 31%), Syria (up to 30%), Egypt (up to 20%) (Luis 2004), and the Sinai Peninsula. To some extent, the frequency of Haplogroup J-M267 collapses at the borders of Arabic/Semitic-speaking territories with mainly non-Arabic/Semitic speaking territories, such as Turkey (9%), Iran (5%), Sunni Iraqi Biradari of North India (38%) and Northern Indian Shia (11%) (Eaaswarkhanth 2009). However, it should be noted that some figures above tend to be the larger ones obtained in some studies, while the smaller figures obtained in other studies are omitted. It is also highly frequent among Jews, especially the Kohanim line (46%) (Hammer 2009).
ISOGG states that J-M267 originated in the Middle East. It is found in parts of the Near East, Anatolia and North Africa, with a much sparser distribution in the southern Mediterranean flank of Europe, and in Ethiopia.
The origin of the J-P58 subclade is likely in the more northerly populations and then spreads southward into the Arabian Peninsula. The high Y-STR variance of J-P58 in ethnic groups in Turkey, as well as northern regions in Syria and Iraq, supports the inference of an origin of J-P58 in nearby eastern Anatolia. Moreover, the network analysis of J-P58 haplotypes shows that some of the populations with low diversity, such as Bedouins from Israel, Qatar, Sudan and the United Arab Emirates, are tightly clustered near high-frequency haplotypes suggesting founder effects with star burst expansion into the Arabian Desert (Chiaroni 2010).
Haplogroup J-M172[Phylogenetics 4] is found in the highest concentrations in the Caucasus and the Fertile Crescent/Iraq and is found throughout the Mediterranean (including the Italian, Balkan, Anatolian and Iberian peninsulas and North Africa) (Giacomo 2003).
The highest ever reported concentration of J-M172 was 72% in Northeastern Georgia (Nasidze 2004). Other high reports include Ingush 32% (Nasidze 2004), Cypriots 30-37% (Capelli 2005), Lebanese 30% (Wells et al. 2001), Assyrian, Mandean and Arab Iraqis 29.7% (Sanchez et al. 2005), Syrians and Syriacs 22.5%, Kurds 24%-28%, Iranians 23% (Aburto 2006), Ashkenazi Jews 24%, Palestinian Arabs 16.8%-25%, Sephardic Jews 29% and North Indian Shia Muslim 18%, Chechens 26%, Balkars 24%, Yaghnobis 32%, Armenians 21-24%, and Azerbaijanis 24%-48%.
Some J-M172 haplotypes (as well as some J-M267 ones) belong to the "Cohen Modal Haplotype".
In South Asia, J2-M172 was found to be significantly higher among Dravidian castes at 19% than among Indo-European castes at 11%. J2-M172 and J-M410 is found 21% among Dravidian middle castes, followed by upper castes, 18.6%, and lower castes 14%. (Sengupta 2006) Subclades of M172 such as M67 and M92 were not found in either Indian or Pakistani samples which also might hint at a partial common origin.(Sengupta 2006)
In Y-chromosome phylogenetics, subclades are the branches of haplogroups. These subclades are also defined by single nucleotide polymorphisms (SNPs) or unique event polymorphisms (UEPs).
Prior to 2002, there were in academic literature at least seven naming systems for the Y-Chromosome Phylogenetic tree. This led to considerable confusion. In 2002, the major research groups came together and formed the Y-Chromosome Consortium (YCC). They published a joint paper that created a single new tree that all agreed to use. Later, a group of citizen scientists with an interest in population genetics and genetic genealogy formed a working group to create an amateur tree aiming at being above all timely. The table below brings together all of these works at the point of the landmark 2002 YCC Tree. This allows a researcher reviewing older published literature to quickly move between nomenclatures.
|YCC 2002/2008 (Shorthand)||(α)||(β)||(γ)||(δ)||(ε)||(ζ)||(η)||YCC 2002 (Longhand)||YCC 2005 (Longhand)||YCC 2008 (Longhand)||YCC 2010r (Longhand)||ISOGG 2006||ISOGG 2007||ISOGG 2008||ISOGG 2009||ISOGG 2010||ISOGG 2011||ISOGG 2012|
The following research teams per their publications were represented in the creation of the YCC tree.
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There are several confirmed and proposed phylogenetic trees available for haplogroup J-M304. The scientifically accepted one is the Y-Chromosome Consortium (YCC) one published in Karafet 2008 and subsequently updated. A draft tree that shows emerging science is provided by Thomas Krahn at the Genomic Research Center in Houston, Texas. The International Society of Genetic Genealogy (ISOGG) also provides an amateur tree.
The Genomic Research Center draft tree
- J-M304 12f2a, 12f2.1, M304, P209, L60, L134
- M267, L255, L321, L765, L814, L827, L1030
- L136, L572, L620
- P58, L815, L828
- Z1828, Z1829, Z1832, Z1833, Z1834, Z1836, Z1839, Z1840, Z1841, Z1843, Z1844
- M172, L228
- M410, L152, L212, L505, L532, L559
- L26, L27, L927
- M12, M102, M221, M314, L282
- M410, L152, L212, L505, L532, L559
- M267, L255, L321, L765, L814, L827, L1030
The Y-Chromosome Consortium tree
This is the official scientific tree produced by the Y-Chromosome Consortium (YCC). The last major update was in 2008 (Karafet 2008). Subsequent updates have been quarterly and biannual. The current version is a revision of the 2010 update.
|This section needs expansion. You can help by adding to it. (January 2013)|
- Archaeogenetics of the Near East
- Genetic history of Europe
- Conversion table for Y chromosome haplogroups
- Genetic Genealogy
- Human Y-chromosome DNA haplogroup
- Molecular Phylogeny
- Y-chromosomal Aaron
- Y-chromosome haplogroups by populations
- Y-DNA haplogroups in European populations
- Y-DNA haplogroups in South Asian populations
- Y-DNA haplogroups by populations of East and Southeast Asia
- Y-DNA haplogroups by populations of Near East and North Africa
- Y-DNA haplogroups by populations of the Caucasus
- Y-DNA haplogroups by ethnic groups
Y-DNA J subclades
- Poznik, G. David; et al. (25 April 2016). "Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences". Nature Genetics. 48 (6): 593–599. doi:10.1038/ng.3559. Retrieved 12 June 2016.
- Y-DNA Haplogroup J, ISOGG, 2015
- Shou et al (2010), Y-chromosome distributions among populations in Northwest China identify significant contribution from Central Asian pastoralists and lesser influence of western Eurasians, Journal of Human Genetics (2010) 55, 314–322; doi:10.1038/jhg.2010.30; published online 23 April 2010, Table 2. Haplogroup distribution and Y-chromosome diversity in 14 northwestern populations
- Wood, Elizabeth T.; et al. (2005). "Contrasting patterns of Y chromosome and mtDNA variation in Africa: evidence for sex-biased demographic processes" (PDF). European Journal of Human Genetics. 13 (7): 867–876. Retrieved 24 September 2016.
- Černý, Viktor; et al. (2009). "Out of Arabia—the settlement of island Soqotra as revealed by mitochondrial and Y chromosome genetic diversity" (PDF). American journal of Physical Anthropology. 138 (4): 439–447. doi:10.1002/ajpa.20960. Retrieved 12 June 2016.
- El-Sibai 2009 reported results from several studies : Di Giacomo 2003, Al-Zahery 2003, Flores 2004, Cinnioglu 2004, Capelli 2005, Goncalves 2005, Zalloua 2008, Cadenas 2008
- Cerny 2008: J-12f2(xM267,M172)(45/63)
- Shen 2004: Haplogroup J-M304(xM267,M172) in 1/20 Ashkenazi Jews.
- Zhong et al (2011), Mol Biol Evol January 1, 2011 vol. 28 no. 1 717-727, See Table.
- Yunusbaev 2006:Stats are for combined Dagestan ethnic groups see the Dagestan article for details. Dargins (91%), Avars (67%), Chamalins (67%), Lezgins (58%), Tabassarans (49%), Andis (37%), Assyrians (29%), Bagvalins (21.4%))
- Cadenas 2008: 42/72=58.3% J-M267
- Yunusbaev 2006: Dargwas (91%), Avars (67%), Chamalins (67%), Lezgins (58%), Tabassarans (49%), Andis (37%), Assyrians (29%), Bagvalins (21.4%))stats combined Dagestan ethnic groups see Dagestan article
- Nebel 2001: 21/32
- 31% is based on Combined Data
- Sengupta, S; Zhivotovsky, LA; King, R; et al. (February 2006). "Polarity and temporality of high-resolution y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of Central Asian pastoralists". Am. J. Hum. Genet. 78: 202–21. doi:10.1086/499411. PMC . PMID 16400607.
- "Y-DNA Haplotree". Family Tree DNA uses the Y-Chromosome Consortium tree and posts it on their website.
- Y Chromosome Consortium "YCC" (2002). "A Nomenclature System for the Tree of Human Y-Chromosomal Binary Haplogroups". Genome Research. 12 (2): 339–48. doi:10.1101/gr.217602. PMC . PMID 11827954.
- Abu-Amero, Khaled K; Hellani, Ali; González, Ana M; Larruga, Jose M; Cabrera, Vicente M; Underhill, Peter A (2009). "Saudi Arabian Y-Chromosome diversity and its relationship with nearby regions". BMC Genetics. 10: 59. doi:10.1186/1471-2156-10-59. PMC . PMID 19772609.
- Alshamali, Farida; Pereira, LuÍsa; Budowle, Bruce; Poloni, Estella S.; Currat, Mathias (2009). "Local Population Structure in Arabian Peninsula Revealed by Y-STR diversity". Human Heredity. 68 (1): 45–54. doi:10.1159/000210448. PMID 19339785.
- Chiaroni, Jacques; King, Roy J; Myres, Natalie M; Henn, Brenna M; Ducourneau, Axel; Mitchell, Michael J; Boetsch, Gilles; Sheikha, Issa; et al. (2009). "The emergence of Y-chromosome haplogroup J1e among Arabic-speaking populations". European Journal of Human Genetics. 18 (3): 348–53. doi:10.1038/ejhg.2009.166. PMC . PMID 19826455.
- Chiaroni, Jacques; King, Roy J; Myres, Natalie M; Henn, Brenna M; Ducourneau, Axel; Mitchell, Michael J; Boetsch, Gilles; Sheikha, Issa; et al. (2010). "The emergence of Y-chromosome haplogroup J1e among Arabic-speaking populations". European Journal of Human Genetics. 18 (3): 348–53. doi:10.1038/ejhg.2009.166. PMC . PMID 19826455.
- Cinnioglu, Cengiz; King, Roy; Kivisild, Toomas; Kalfoglu, Ersi; Atasoy, Sevil; Cavalleri, Gianpiero L.; Lillie, Anita S.; Roseman, Charles C.; et al. (2004). "Excavating Y-chromosome haplotype strata in Anatolia". Human Genetics. 114 (2): 127–48. doi:10.1007/s00439-003-1031-4. PMID 14586639.
- Di Giacomo, F.; Luca, F.; Anagnou, N.; Ciavarella, G.; Corbo, R.M.; Cresta, M.; Cucci, F.; Di Stasi, L.; et al. (2003). "Clinal patterns of human Y chromosomal diversity in continental Italy and Greece are dominated by drift and founder effects". Molecular Phylogenetics and Evolution. 28 (3): 387–95. doi:10.1016/S1055-7903(03)00016-2. PMID 12927125.
- Di Giacomo, F.; Luca, F.; Popa, L. O.; Akar, N.; Anagnou, N.; Banyko, J.; Brdicka, R.; Barbujani, G.; et al. (2004). "Y chromosomal haplogroup J as a signature of the post-neolithic colonization of Europe". Human Genetics. 115 (5): 357–71. doi:10.1007/s00439-004-1168-9. PMID 15322918.
- Hammer, Michael F.; Behar, Doron M.; Karafet, Tatiana M.; Mendez, Fernando L.; Hallmark, Brian; Erez, Tamar; Zhivotovsky, Lev A.; Rosset, Saharon; Skorecki, Karl (2009). "Extended Y chromosome haplotypes resolve multiple and unique lineages of the Jewish priesthood". Human Genetics. 126 (5): 707–17. doi:10.1007/s00439-009-0727-5. PMC . PMID 19669163.
- Jobling, Mark A.; Tyler-Smith, Chris (2000). "New uses for new haplotypes". Trends in Genetics. 16 (8): 356–62. doi:10.1016/S0168-9525(00)02057-6. PMID 10904265.
- Karafet, T. M.; Mendez, F. L.; Meilerman, M. B.; Underhill, P. A.; Zegura, S. L.; Hammer, M. F. (2008). "New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree". Genome Research. 18 (5): 830–8. doi:10.1101/gr.7172008. PMC . PMID 18385274.
- Luca, F.; Di Giacomo, F.; Benincasa, T.; Popa, L.O.; Banyko, J.; Kracmarova, A.; Malaspina, P.; Novelletto, A.; Brdicka, R. (2007). "Y-chromosomal variation in the Czech Republic". American Journal of Physical Anthropology. 132 (1): 132–9. doi:10.1002/ajpa.20500. PMID 17078035.
- Luis, J; Rowold, D; Regueiro, M; Caeiro, B; Cinnioglu, C; Roseman, C; Underhill, P; Cavallisforza, L; Herrera, R (2004). "The Levant versus the Horn of Africa: Evidence for Bidirectional Corridors of Human Migrations". The American Journal of Human Genetics. 74 (3): 532–44. doi:10.1086/382286. PMC . PMID 14973781.
- Mirabal S, Varljen T, Gayden T, et al. (July 2010). "Human Y-chromosome short tandem repeats: A tale of acculturation and migrations as mechanisms for the diffusion of agriculture in the Balkan Peninsula". American Journal of Physical Anthropology. 142 (3): 380–390. doi:10.1002/ajpa.21235. PMID 20091845.
- Nasidze, I.; Ling, E. Y. S.; Quinque, D.; Dupanloup, I.; Cordaux, R.; Rychkov, S.; Naumova, O.; Zhukova, O.; et al. (2004). "Mitochondrial DNA and Y-Chromosome Variation in the Caucasus". Annals of Human Genetics. 68 (3): 205–21. doi:10.1046/j.1529-8817.2004.00092.x. PMID 15180701.
- Pericić M, Lauc LB, Klarić IM, et al. (October 2005). "High-resolution phylogenetic analysis of southeastern Europe traces major episodes of paternal gene flow among Slavic populations". Mol. Biol. Evol. 22 (10): 1964–75. doi:10.1093/molbev/msi185. PMID 15944443.
- Shen, Peidong; Lavi, Tal; Kivisild, Toomas; Chou, Vivian; Sengun, Deniz; Gefel, Dov; Shpirer, Issac; Woolf, Eilon; et al. (2004). "Reconstruction of patrilineages and matrilineages of Samaritans and other Israeli populations from Y-Chromosome and mitochondrial DNA sequence Variation". Human Mutation. 24 (3): 248–60. doi:10.1002/humu.20077. PMID 15300852.
Thesis and Dissertations
- Varzari, Alexander (2006). Population History of the Dniester-Carpathians: Evidence from Alu Insertion and Y-Chromosome Polymorphisms (PDF) (Thesis). München, University. OCLC 180859661.
- Dienekes (2009). "Middle Eastern and Sub-Saharan lineages in Indian Muslim populations".
- Aburto, Alfred A (2006). "Y haplogroup J in Iran" (Mailing list). Retrieved 3 January 2013.
- yJdb: the Y-haplogroup J database haplotypes of haplogroup J.
- Haplogroup J subclades at International Society of Genetic Genealogy
- Nebel et al. 2001, see Modal Haplotypes of "J1" (as Eu10)
- Sanchez, Juan J; Hallenberg, Charlotte; Børsting, Claus; Hernandez, Alexis; Gorlin, RJ (2005). "High frequencies of Y chromosome lineages characterized by E3b1, DYS19-11, DYS392-12 in Somali males". European Journal of Human Genetics. 13 (7): 856–66. doi:10.1038/sj.ejhg.5201390. PMID 15756297.
- Sengupta S, Zhivotovsky LA, King R, et al. (February 2006). "Polarity and temporality of high-resolution y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of Central Asian pastoralists". Am. J. Hum. Genet. 78 (2): 202–21. doi:10.1086/499411. PMC . PMID 16400607.
- ISOGG Y-DNA Haplogroup J and its Subclades - 2016 (2 February 2016).
- This table shows the historic names for J-M304 (a.k.a. J-P209, and J-12f2.1) in published peer reviewed literature. Note that in Semino 2000 Eu09 is a subclade of Eu10 and in Karafet 2001 24 is a subclade of 23.
YCC 2002/2008 (Shorthand) J-M304
(a.k.a. J-12f2.1 or J-P209)
Jobling and Tyler-Smith 2000 9 Underhill 2000 VI Hammer 2001 Med Karafet 2001 23 Semino 2000 Eu10 Su 1999 H4 Capelli 2001 B YCC 2002 (Longhand) J* YCC 2005 (Longhand) J YCC 2008 (Longhand) J YCC 2010r (Longhand) J
- This table shows the historic names for J-M267 and its earlier discovered and named subclade J-M62 in published peer reviewed literature.
YCC 2002/2008 (Shorthand) J-M267 J-M62 Jobling and Tyler-Smith 2000 - 9 Underhill 2000 - VI Hammer 2001 - Med Karafet 2001 - 23 Semino 2000 - Eu10 Su 1999 - H4 Capelli 2001 - B YCC 2002 (Longhand) - J1 YCC 2005 (Longhand) J1 J1a YCC 2008 (Longhand) J1 J1a YCC 2010r (Longhand) J1 J1a
- This table shows the historic names for J-M172 in published peer reviewed literature. Note that in Semino 2000 Eu09 is a subclade of Eu10 and in Karafet 2001 24 is a subclade of 23.
YCC 2002/2008 (Shorthand) J-M172 Jobling and Tyler-Smith 2000 9 Underhill 2000 VI Hammer 2001 Med Karafet 2001 24 Semino 2000 Eu9 Su 1999 H4 Capelli 2001 B YCC 2002 (Longhand) J2* YCC 2005 (Longhand) J2 YCC 2008 (Longhand) J2 YCC 2010r (Longhand) J2
Phylogenetic tree and Distribution Maps of Y-DNA haplogroup J
- Youtube Haplogroup J2 Channel
- Spread of Haplogroup J, from National Geographic
- British Isles DNA Project
|Evolutionary tree of human Y-chromosome DNA haplogroups [χ 1][χ 2]|
|A00||A0-T [χ 3]|
|A0||A1 [χ 4]|
|I||J||LT [χ 5]||K2|
|L||T [χ 6]||NO [χ 7]||K2b [χ 8]||K2c||K2d||K2e [χ 9]|
|N||O||K2b1 [χ 10]||P|
|K2b1a [χ 11]||K2b1b||K2b1c||M||P1||P2|
|K2b1a1||K2b1a2||K2b1a3||S [χ 12]||Q||R|