Iron cytoporphyrin IX, formilporphyrin
3D model (JSmol)
Except where otherwise noted, data are given for materials in their standard state (at 25 °C [77 °F], 100 kPa).
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Heme A (or haem A) is a heme, a coordination complex consisting of a macrocyclic ligand called a porphyrin, chelating an iron atom. Heme A is a biomolecule and is produced naturally by many organisms. Heme A, often appears a dichroic green/red, is a structural relative of heme B, a component of hemoglobin, the red pigment in blood.
Relationship to other hemes
Heme A differs from heme B in that a methyl side chain at ring position 8 is oxidized to a formyl group and a hydroxyethylfarnesyl group, an isoprenoid chain, has been attached to the vinyl side chain at ring position 2 of the iron tetrapyrrole heme. Heme A is similar to heme o, in that both have this farnesyl addition at position 2 but heme O does not have the formyl group at position 8, still containing the methyl group. The correct structure of heme A, based upon NMR and IR experiments of the reduced, Fe(II), form of the heme, was published in 1975.
The final structural question of the exact geometric configuration about the first carbon at ring position 3 of ring I, the carbon bound to the hydroxyl group, has been recently published as the chiral S configuration.
Like heme B, heme A is often attached to the apoprotein through a coordinate bond between the heme iron and a conserved amino acid side-chain. In the important respiratory protein cytochrome c oxidase (CCO) this ligand 5 for the heme A at the oxygen reaction center is a histidyl group. This is a common ligand for many hemeproteins including hemoglobin and myoglobin.
An example of a metalloprotein that contains heme A is cytochrome c oxidase. This very complicated protein contains heme A at two different sites, each with a different function. The iron of the heme A of cytochrome a is hexacoordinated, that is bound with 6 other atoms. The iron of the heme A of cytochrome a3 is sometimes bound by 5 other atoms leaving the sixth site available to bind dioxygen (molecular oxygen). In addition, this enzyme binds 3 copper, magnesium, zinc, and several potassium and sodium ions. The two heme A groups in CCO are thought to readily exchange electrons between each other, the copper ions and the closely associated protein cytochrome c.
Both the formyl group and the isoprenoid side chain are thought to play important roles in conservation of the energy of oxygen reduction by cytochrome c oxidase. CCO is thought to be responsible for conserving the energy of dioxygen reduction by pumping protons into the inner mitochondrial space. Both the formyl and hydroxyethylfarnesyl groups of heme A are thought to play important roles in this critical process, as published by the influential group of S. Yoshikawa.
- Caughey, W.S.; Smythe, G.A.; O'Keefe, D.H.; Maskasky, J.E.; Smith, M.L. (1975). "Heme A of Cytochrome c Oxidase". Journal of Biological Chemistry. 250: 7602–7622. PMID 170266.
- Warburg, O; Gewitz H S. (1951). "Cytohämin aus Herzmuskel". Zeitschrift für Physiologische Chemie. 288: 1–4. doi:10.1515/bchm2.1951.288.1.1.
- Yamashita E, Aoyama H, Yao M, Muramoto K, Shinzawa-Itoh K, Yoshikawa S, Tsukihara T.; Aoyama; Yao; Muramoto; Shinzawa-Itoh; Yoshikawa; Tsukihara (2005). "Absolute configuration of the hydroxyfarnesylethyl group of heme A, determined by X-ray structural analysis of bovine heart cytochrome c oxidase using methods applicable at 2.8 Angstrom resolution". Acta Crystallographica D. 61 (10): 1373–1377. doi:10.1107/S0907444905023358.
- Tsukihara T, Shimokata K, Katayama Y, Shimada H, Muramoto K, Aoyama H, Mochizuki M, Shinzawa-Itoh K, Yamashita E, Yao M, Ishimura Y, Yoshikawa S.; Shimokata; Katayama; Shimada; Muramoto; Aoyama; Mochizuki; Shinzawa-Itoh; Yamashita; Yao; Ishimura; Yoshikawa (2003). "The low-spin heme of cytochrome c oxidase as the driving element of the proton-pumping process". PNAS. 100 (26): 15304–15309. PMC . PMID 14673090. doi:10.1073/pnas.2635097100.
- Yoshikawa, S.; Shinzawa-Itoh, K.; Nakashima, R.; Yaono, R.; Yamashita, E.; Inoue, N.; Yao, M.; Fei, M. J.; et al. (1998). "Redox-Coupled Crystal Structural Changes in Bovine Heart Cytochrome c Oxidase". Science. 280 (5370): 1723–1729. PMID 9624044. doi:10.1126/science.280.5370.1723.
- Shimokata K, Katayama Y, Murayama H, Suematsu M, Tsukihara T, Muramoto K, Aoyama H, Yoshikawa S, Shimada H.; Katayama; Murayama; Suematsu; Tsukihara; Muramoto; Aoyama; Yoshikawa; Shimada (2007). "The proton pumping pathway of bovine heart cytochrome c oxidase". PNAS. 104 (10): 4200–4205. PMC . PMID 17360500. doi:10.1073/pnas.0611627104.