Incomplete lineage sorting

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Incomplete lineage sorting[1][2][3] is a characteristic of phylogenetic analysis where the tree produced by a single gene differs from the population or species level tree.[4]

Incomplete lineage sorting (ILS) occurs when a polymorphic ancestral species, with two or more alleles (haplotypes) at a given locus divides into two lineages. Both alleles can be retained in the descendant branches, and when one of those lineages divides again, the phylogenetic tree for that locus (the gene tree) may or may not match the branching order for the species-level evolutionary tree.[4]

References[edit]

  1. ^ Simpson, Michael G (2010-07-19). Plant Systematics. ISBN 9780080922089.
  2. ^ Kuritzin, A; Kischka, T; Schmitz, J; Churakov, G (2016). "Incomplete Lineage Sorting and Hybridization Statistics for Large-Scale Retroposon Insertion Data". PLOS Computational Biology. 12 (3): e1004812. Bibcode:2016PLSCB..12E4812K. doi:10.1371/journal.pcbi.1004812. PMC 4788455. PMID 26967525.
  3. ^ Suh, A; Smeds, L; Ellegren, H (2015). "The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds". PLOS Biology. 13 (8): e1002224. doi:10.1371/journal.pbio.1002224. PMC 4540587. PMID 26284513.
  4. ^ a b Rogers, Jeffrey; Gibbs, Richard A. (2014-05-01). "Comparative primate genomics: emerging patterns of genome content and dynamics". Nature Reviews Genetics. 15 (5): 347–359. doi:10.1038/nrg3707. PMC 4113315. PMID 24709753.

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