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Köhncke was a member of the house trio Whirlpool Productions, along with Hans Nieswandt and Eric D. Clark. Together, they had a number one hit in Italy in 1997 with their house track "From Disco to Disco". Since 1999, he has released tracks on the Cologne label Kompakt. In his music, he combines minimal techno with disco and Krautrock elements.
In 2013, he co-created a side project with Hot Chip frontman, Alexis Taylor. The group's name is Fainting by Numbers and a double side single has been produced.
His Track "Timecode" from 2004 is inspired by the song "How Long" (Lipps Inc./1980).
- Spiralen Der Erinnerung (1999)
- Was Ist Musik (2002)
- Doppelleben (2005)
- Safe and Sound (2008)
- Bass ist Musik (2013)
- Justus Köhncke & The Wonderful Frequency Band (2013)