By 2009, KAUR had begun to experience a number of problems. Amongst the most troublesome of KAUR's woes was a major staffing issue. Owing to a lack of official support, and a decrease in student interest in traditional media, KAUR spent its last year as a student-run station under the direction of only six students during the first semester and five throughout the second, spring semester. Although understaffed, the station continued to develop new ideas for operating in the "new media" era. Plans had been made to begin streaming the station over the internet or to regularly "podcast" student shows by offering down-loadable content on the, now inaccessible, student website. Other plans in development early in the spring of 2009 included adding broadcasts of the Augustana University men's baseball team to the station's sports programming which already featured women's basketball.
In the spring of 2009, administrators at Augustana University decided to discontinue KAUR's student operations in favor of broadcasting Minnesota Public Radio News (in lieu of alternative suggestions). The station left the air for a week before returning on September 15, 2009, with the new MPR format. Augustana University continues to own the station while MPR provides programming, maintenance, and funding for the regular operation of the station. The students assigned to operate KAUR for the 2009-2010 academic year, as part of the federal work-study program, were forcibly reassigned to other departments. The college had also received proposals from a number of other parties, including religious and ethnic interests, as well as a non-profit proposal which would have continued the student-run scheme.