List of systems biology visualization software

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Online software[edit]

Name Description Site
GESTALT Workbench graphical workbench for analysis of large-scale genomic sequence data [1]
N-Browse interactive graphical browser for biological networks [2]
NetPath curated resource of human signal transduction pathways [3]
MEGA free, online, open-source, phylogenetic analysis, drawing dendrograms etc. [4]
REACTOME free, online, open-source, curated pathway database encompassing many areas of human biology [5]
WikiPathways curate biological pathways [6]

Applications[edit]

Name Description OS License Site
BioTapestry interactive tool for building, visualizing, and simulating genetic regulatory networks multiplatform (Java-based) LGPL [7]
Cytoscape data integration, network visualization, and analysis multiplatform (Java-based) LGPL [8]
GenMAPP visualize and analyze genomic data in the context of pathways Windows Apache License [9]
MEGA free, online, open-source, phylogenetic analysis, drawing dendrograms etc. Windows/DOS-Win/Mac/Linux Shareware [10]
PathVisio tool for displaying and editing biological pathways multiplatform (Java-based) Apache License [11]
InCroMAP tool for the integration of omics data and joint visualization of experimental data in pathways multiplatform (Java-based) LGPL [12]
Pathview pathway based data integration and visualization, easy to use and integrate into pathway analysis multiplatform (R/Bioconductor) GPL [13] [14]