A mycorrhiza (from Greek μυκός mykós, "fungus", and ῥίζα rhiza, "root"; pl. mycorrhizae or mycorrhizas) is a symbiotic association between a fungus and the roots of a vascular host plant. The term mycorrhiza refers to the role of the fungi in the plants' rhizosphere, its root system. Mycorrhizae play important roles in soil biology and soil chemistry.
In a mycorrhizal association, the fungus colonizes the host plant's root tissues, either intracellularly as in arbuscular mycorrhizal fungi (AMF or AM), or extracellularly as in ectomycorrhizal fungi. The association is generally mutualistic, but in particular species or in particular circumstances, mycorrhizae may be variously pathogenic in the host plants.
- 1 Mutualist dynamics
- 2 Occurrence of mycorrhizal associations
- 3 Types of mycorrhiza
- 4 Discovery
- 5 See also
- 6 References
- 7 External links
Mycorrhizal fungi form a mutualistic relationship with the roots of most plant species. In such a relationship, both the plants themselves and those parts of the roots that host the fungi, are said to be mycorrhizal. Relatively few of the mycorrhizal relationships between plant species and fungi have been examined to date, but 95% of the plant families investigated are predominantly mycorrhizal either in the sense that most of their species associate beneficially with mycorrhizae, or are absolutely dependent on mycorrhizae. The Orchidaceae are notorious as a family in which the absence of the correct mycorrhizae is fatal even to germinating seeds.
Recent research into ectomycorrhizal plants in boreal forests has indicated that mycorrhizal fungi and plants have a relationship that may be more complex than simply mutualistic. This relationship was noted when mycorrhizal fungi were unexpectedly found to be hoarding nitrogen from plant roots in times of nitrogen scarcity. Researchers argue that some mycorrhizae distribute nutrients based upon the environment with surrounding plants and other mycorrhizae. They go on to explain how this updated model could explain why mycorrhizae do not alleviate plant nitrogen limitation, and why plants can switch abruptly from a mixed strategy with both mycorrhizal and nonmycorrhizal roots to a purely mycorrhizal strategy as soil nitrogen availability declines.
The mycorrhizal mutualistic association provides the fungus with relatively constant and direct access to carbohydrates, such as glucose and sucrose. The carbohydrates are translocated from their source (usually leaves) to root tissue and on to the plant's fungal partners. In return, the plant gains the benefits of the mycelium's higher absorptive capacity for water and mineral nutrients, partly because of the large surface area of fungal hyphae, which are much longer and finer than plant root hairs, and partly because some such fungi can mobilize soil minerals unavailable to the plants' roots. The effect is thus to improve the plant's mineral absorption capabilities.
Unaided plant roots may be unable to take up nutrients that are chemically or physically immobilised; examples include phosphate ions and micronutrients such as iron. One form of such immobilization occurs in soil with high clay content, or soils with a strongly basic pH. The mycelium of the mycorrhizal fungus can, however, access many such nutrient sources, and make them available to the plants they colonize. Thus, many plants are able to obtain phosphate, without using soil as a source. Another form of immobilisation is when nutrients are locked up in organic matter that is slow to decay, such as wood, and some mycorrhizal fungi act directly as decay organisms, mobilising the nutrients and passing some onto the host plants; for example, in some dystrophic forests, large amounts of phosphate and other nutrients are taken up by mycorrhizal hyphae acting directly on leaf litter, bypassing the need for soil uptake. Inga alley cropping, proposed as an alternative to slash and burn rainforest destruction, relies upon mycorrhiza within the Inga Tree root system to prevent the rain from washing phosphorus out of the soil.
In some more complex relationships, mycorrhizal fungi do not just collect immobilised soil nutrients, but connect individual plants together by mycorrhizal networks that transport water, carbon, and other nutrients directly from plant to plant through underground hyphal networks.
Suillus tomentosus, a basidiomycete fungus, produces specialized structures known as tuberculate ectomycorrhizae with its plant host lodgepole pine (Pinus contorta var. latifolia). These structures have been shown to host nitrogen fixing bacteria which contribute a significant amount of nitrogen and allow the pines to colonize nutrient-poor sites.
The mechanisms by which mycorrhizae increase absorption include some that are physical and some that are chemical. Physically, most mycorrhizal mycelia are much smaller in diameter than the smallest root or root hair, and thus can explore soil material that roots and root hairs cannot reach, and provide a larger surface area for absorption. Chemically, the cell membrane chemistry of fungi differs from that of plants. For example, they may secrete organic acid that dissolve or chelate many ions, or release them from minerals by ion exchange. Mycorrhizae are especially beneficial for the plant partner in nutrient-poor soils.
Disease, drought and salinity resistance and its correlation to mycorrhizae
Mycorrhizal plants are often more resistant to diseases, such as those caused by microbial soil-borne pathogens. AMF was also significantly correlated with soil biological fertility variables such as soil fungi and soil bacteria, including soil disease. Furthermore, AMF was significantly correlated with soil physical variable, but only with water level and not with aggregate stability. and are also more resistant to the effects of drought. The significance of arbuscular mycorrhizal fungi includes alleviation of salt stress and its beneficial effects on plant growth and productivity. Although salinity can negatively affect arbuscular mycorrhizal fungi, many reports show improved growth and performance of mycorrhizal plants under salt stress conditions 
Resistance to insects
Recent research has shown that plants connected by mycorrihzal fungi can use these underground connections to produce and receive warning signals. Specifically, when a host plant is attacked by an aphid, the plant signals surrounding connected plants of its condition. The host plant releases Volatile organic compounds (VOCs) that attract the insect's predators. The plants connected by mycorrhizal fungi are also prompted to produce identical VOCs that protect the uninfected plants from being targeted by the insect. Additionally, this assists the mycorrhizal fungi by preventing the plant’s carbon relocation which negatively affects the fungi’s growth and occurs when the plant is attacked by herbivores.
Colonization of barren soil
Plants grown in sterile soils and growth media often perform poorly without the addition of spores or hyphae of mycorrhizal fungi to colonise the plant roots and aid in the uptake of soil mineral nutrients. The absence of mycorrhizal fungi can also slow plant growth in early succession or on degraded landscapes. The introduction of alien mycorrhizal plants to nutrient-deficient ecosystems puts indigenous non-mycorrhizal plants at a competitive disadvantage.
Resistance to toxicity
Fungi have been found to have a protective role for plants rooted in soils with high metal concentrations, such as acidic and contaminated soils. Pine trees inoculated with Pisolithus tinctorius planted in several contaminated sites displayed high tolerance to the prevailing contaminant, survivorship and growth. One study discovered the existence of Suillus luteus strains with varying tolerance of zinc. Another study discovered that zinc-tolerant strains of Suillus bovinus conferred resistance to plants of Pinus sylvestris. This was probably due to binding of the metal to the extramatricial mycelium of the fungus, without affecting the exchange of beneficial substances.
Occurrence of mycorrhizal associations
Mycorrhizas are present in 92% of plant families studied (80% of species), with arbuscular mycorrhizas being the ancestral and predominant form, and the most prevalent symbiotic association found in the plant kingdom. The structure of arbuscular mycorrhizas has been highly conserved since their first appearance in the fossil record, with both the development of ectomycorrhizas, and the loss of mycorrhizas, evolving convergently on multiple occasions.
Types of mycorrhiza
Mycorrhizas are commonly divided into ectomycorrhizas and endomycorrhizas. The two types are differentiated by the fact that the hyphae of ectomycorrhizal fungi do not penetrate individual cells within the root, while the hyphae of endomycorrhizal fungi penetrate the cell wall and invaginate the cell membrane. Endomycorrhiza includes arbuscular, ericoid, and orchid mycorrhiza, while arbutoid mycorrhizas can be classified as ectoendomycorrhizas. Monotropoid mycorrhizas form a special category.
Endomycorrhizas are variable and have been further classified as arbuscular, ericoid, arbutoid, monotropoid, and orchid mycorrhizas. Arbuscular mycorrhizas, or AM (formerly known as vesicular-arbuscular mycorrhizas, or VAM), are mycorrhizas whose hyphae enter into the plant cells, producing structures that are either balloon-like (vesicles) or dichotomously branching invaginations (arbuscules). The fungal hyphae do not in fact penetrate the protoplast (i.e. the interior of the cell), but invaginate the cell membrane. The structure of the arbuscules greatly increases the contact surface area between the hypha and the cell cytoplasm to facilitate the transfer of nutrients between them.
Arbuscular mycorrhizas are formed only by fungi in the division Glomeromycota. Fossil evidence and DNA sequence analysis suggest that this mutualism appeared 400-460 million years ago, when the first plants were colonizing land. Arbuscular mycorrhizas are found in 85% of all plant families, and occur in many crop species. The hyphae of arbuscular mycorrhizal fungi produce the glycoprotein glomalin, which may be one of the major stores of carbon in the soil. Arbuscular mycorrhizal fungi have (possibly) been asexual for many millions of years and, unusually, individuals can contain many genetically different nuclei (a phenomenon called heterokaryosis).
Ectomycorrhizas, or EcM, are typically formed between the roots of around 10% of plant families, mostly woody plants including the birch, dipterocarp, eucalyptus, oak, pine, and rose families, orchids, and fungi belonging to the Basidiomycota, Ascomycota, and Zygomycota. Some EcM fungi, such as many Leccinum and Suillus, are symbiotic with only one particular genus of plant, while other fungi, such as the Amanita, are generalists that form mycorrhizas with many different plants. An individual tree may have 15 or more different fungal EcM partners at one time. Thousands of ectomycorrhizal fungal species exist, hosted in over 200 genera. A recent study has conservatively estimated global ectomycorrhizal fungal species richness at approximately 7750 species, although, on the basis of estimates of knowns and unknowns in macromycete diversity, a final estimate of ECM species richness would probably be between 20000 and 25000.
Ectomycorrhizas consist of a hyphal sheath, or mantle, covering the root tip and a Hartig net of hyphae surrounding the plant cells within the root cortex. In some cases the hyphae may also penetrate the plant cells, in which case the mycorrhiza is called an ectendomycorrhiza. Outside the root, Ectomycorrhizal extramatrical mycelium forms an extensive network within the soil and leaf litter.
Nutrients can be shown to move between different plants through the fungal network. Carbon has been shown to move from paper birch trees into Douglas-fir trees thereby promoting succession in ecosystems. The ectomycorrhizal fungus Laccaria bicolor has been found to lure and kill springtails to obtain nitrogen, some of which may then be transferred to the mycorrhizal host plant. In a study by Klironomos and Hart, Eastern White Pine inoculated with L. bicolor was able to derive up to 25% of its nitrogen from springtails. When compared to non-mycorrhizal fine roots, ectomycorrhizae may contain very high concentrations of trace elements, including toxic metals (cadmium, silver) or chlorine. 
The first genomic sequence for a representative of symbiotic fungi, the ectomycorrhizal basidiomycete Laccaria bicolor, has been published. An expansion of several multigene families occurred in this fungus, suggesting that adaptation to symbiosis proceeded by gene duplication. Within lineage-specific genes those coding for symbiosis-regulated secreted proteins showed an up-regulated expression in ectomycorrhizal root tips suggesting a role in the partner communication. Laccaria bicolor is lacking enzymes involved in the degradation of plant cell wall components (cellulose, hemicellulose, pectins and pectates), preventing the symbiont from degrading host cells during the root colonisation. By contrast, Laccaria bicolor possesses expanded multigene families associated with hydrolysis of bacterial and microfauna polysaccharides and proteins. This genome analysis revealed the dual saprotrophic and biotrophic lifestyle of the mycorrhizal fungus that enables it to grow within both soil and living plant roots.
Ericoid mycorrhizas are the third of the three more ecologically important types. They have a simple intraradical (grow in cells) phase, consisting of dense coils of hyphae in the outermost layer of root cells. There is no periradical phase and the extraradical phase consists of sparse hyphae that don't extend very far into the surrounding soil. They might form sporocarps (probably in the form of small cups), but their reproductive biology is little understood.
Ericoid mycorrhizas have also been shown to have considerable saprotrophic capabilities, which would enable plants to receive nutrients from not-yet-decomposed materials via the decomposing actions of their ericoid partners.
This type of mycorrhiza involves plants of the Ericaceae subfamily Arbutoideae. It is however different from ericoid mycorrhiza and resembles ectomycorrhiza, both functionally and in terms of the fungi involved. The difference to ectomycorrhiza is that some hyphae actually penetrate into the root cells, making this type of mycorrhiza an ectendomycorrhiza.
This type of mycorrhiza occurs in the subfamily Monotropoideae of the Ericaceae, as well as several genera in the Orchidaceae. These plants are heterotrophic or mixotrophic and derive their carbon from the fungus partner. This is thus a non-mutualistic, parasitic type of mycorrhizal symbiosis.
All orchids are myco-heterotrophic at some stage during their lifecycle and form orchid mycorrhizas with a range of basidiomycete fungi. Their hyphae penetrate into the root cells and form typical coils.
Associations of fungi with the roots of plants have been known since at least the mid-19th century. However early observers simply recorded the fact without investigating the relationships between the two organisms. This symbiosis was studied and described by Franciszek Kamieński in 1879–1882. Further research was carried out by Albert Bernhard Frank, who introduced the term mycorrhiza in 1885.
- Mycorrhizal fungi and soil carbon storage
- Effect of climate change on plant biodiversity
- Mucigel - substance that creates symbiotic environment for fungi
- Rhizobia - bacteria which fix nitrogen in legumes
- Kirk, P. M.; Cannon, P. F.; David, J. C. & Stalpers, J. (2001). Ainsworth and Bisby’s Dictionary of the Fungi (9th ed.). Wallingford, UK: CAB International.
- Johnson, NC; Graham, JH; Smith, FA (1997). "Functioning of mycorrhizal associations along the mutualism–parasitism continuum". New Phytologist. 135: 575–585. doi:10.1046/j.1469-8137.1997.00729.x.
- Trappe, J. M. (1987). Phylogenetic and ecologic aspects of mycotrophy in the angiosperms from an evolutionary standpoint. Ecophysiology of VA Mycorrhizal Plants, G.R. Safir (EDS). Florida: CRC Press.
- Franklin O; Näsholm T; Högberg P; Högberg MN (2014). "Forests trapped in nitrogen limitation - an ecological market perspective on ectomycorrhizal symbiosis". New Phytol. 203 (2): 657–66. doi:10.1111/nph.12840. PMID 24824576.
- Harrison MJ (2005). "Signaling in the arbuscular mycorrhizal symbiosis". Annu Rev Microbiol. 59: 19–42. doi:10.1146/annurev.micro.58.030603.123749. PMID 16153162.
- Selosse MA; Richard F; He X; Simard SW (2006). "Mycorrhizal networks: des liaisons dangereuses?". Trends Ecol. Evol. 21 (11): 621–628. doi:10.1016/j.tree.2006.07.003. PMID 16843567.
- Li H; Smith SE; Holloway RE, Zhu Y; Smith FA. (2006). "Arbuscular mycorrhizal fungi contribute to phosphorus uptake by wheat grown in a phosphorus-fixing soil even in the absence of positive growth responses". New Phytol. 172 (3): 536–543. doi:10.1111/j.1469-8137.2006.01846.x. PMID 17083683.
- C.Michael Hogan. 2011. Phosphate. Encyclopedia of Earth. Topic ed. Andy Jorgensen. Ed.-in-Chief C.J.Cleveland. National Council for Science and the Environment. Washington DC
- Elkan, Daniel. Slash-and-burn farming has become a major threat to the world's rainforest The Guardian 21 April 2004
- rainforestsaver.org: What is Inga alley cropping? Archived 2011-11-01 at the Wayback Machine.
- Simard, S.W.; Beiler, K.J.; Bingham, M.A.; Deslippe, J.R.; Philip, L.J. and Teste, F.P. 2012. "Mycorrhizal networks: Mechanisms, ecology and modeling". "Fungal Biology Review" 26: 39-60
- Paul, L.R.; Chapman, B.K.; Chanway, C.P. (2007). "Nitrogen Fixation Associated with Suillus tomentosus Tuberculate Ectomycorrhizae on Pinus contorta var. latifolia". Annals of Botany. 99 (6): 1101–1109. doi:10.1093/aob/mcm061. PMC . PMID 17468111.
-  Archived June 23, 2010, at the Wayback Machine.
- "Botany online: Interactions - Plants - Fungi - Parasitic and Symbiotic Relations - Mycorrhiza". Biologie.uni-hamburg.de. Retrieved 2010-09-30.
- "Abstract". Disease Management of Fruits and Vegetables. SpringerLink: 181–192. doi:10.1007/1-4020-4447-X_10. Retrieved 2010-09-30.
- "Dr. Susan Kaminskyj: Endorhizal Fungi". Usask.ca. Retrieved 2010-09-30.
- "Dr. Davies Research Page". Aggie-horticulture.tamu.edu. Retrieved 2010-09-30.
- Lehto, Tarja (1992). "Mycorrhizas and Drought Resistance of Picea sitchensis (Bong.) Carr. I. In Conditions of Nutrient Deficiency". New Phytologist. 122 (4): 661–668. doi:10.1111/j.1469-8137.1992.tb00094.x. JSTOR 2557434.
- Nikolaou, N.; Angelopoulos, K.; Karagiannidis, N. (2003). "Effects of Drought Stress on Mycorrhizal and Non-Mycorrhizal Cabernet Sauvignon Grapevine, Grafted Onto Various Rootstocks". Experimental Agriculture. 39 (3): 241–252. doi:10.1017/S001447970300125X.
- Porcel R, Aroca, R, Ruiz-Lozano JM (2012) "Salinity stress alleviation using arbuscular mycorrhizal fungi. A review" Agronomy for Sustainable Development 32: 181-200 
- Babikova, Zdenka, Lucy Gilbert, Toby J. A. Bruce, Michael Birkett, John C. Caulfield, Christine Woodcock, John A. Pickett, and David Johnson. (2013). "Underground signals carried through common mycelial networks warn neighbouring plants of aphid attack". Ecology Letters. 16.7: 835–43. doi:10.1111/ele.12115.
- Johnson, David; Gilbert, Lucy (2015-03-01). "Interplant signalling through hyphal networks". New Phytologist. 205 (4): 1448–1453. doi:10.1111/nph.13115. ISSN 1469-8137.
- Root fungi turn rock into soil Planet Earth Online 3 July 2009
- Jeffries, P; Gianinazzi, S; Perotto, S; Turnau, K; et al. (2003). "The contribution of arbuscular mycorrhizal fungi in sustainable maintenance of plant health and soil fertility". Biol. Fertility Soils. 37: 1–16. http://cat.inist.fr/?aModele=afficheN&cpsidt=14498927.
- David M. Richardson (2000). Ecology and biogeography of Pinus. London: Cambridge University Press. p. 336. ISBN 0-521-78910-9.
- Tam, Paul C.F. (1995). "Heavy metal tolerance by ectomycorrhizal fungi and metal amelioration by Pisolithus tinctorius". Mycorrhiza. 5: 181–187. doi:10.1007/BF00203335.
- Remy W; Taylor TN; Hass H; Kerp H (1994). "4 hundred million year old vesicular-arbuscular mycorrhizae". Proc. Natl. Acad. Sci. U.S.A. 91 (25): 11841–11843. Bibcode:1994PNAS...9111841R. doi:10.1073/pnas.91.25.11841. PMC . PMID 11607500.
- Wang, B.; Qiu, Y.L. (2006). "Phylogenetic distribution and evolution of mycorrhizas in land plants" (PDF). Mycorrhiza. 16 (5): 299–363. doi:10.1007/s00572-005-0033-6. PMID 16845554. Retrieved 2008-01-21.
- Harley, J.L. and S.E. Smith 1983. Mycorrhizal symbiosis (1st ed.). Academic Press, London.
- Allen, Michael F. 1991. The ecology of mycorrhizae. Cambridge University Press, Cambridge.
- Peterson, R. L.; Massicotte, H. B. & Melville, L. H. (2004). Mycorrhizas: anatomy and cell biology. National Research Council Research Press. ISBN 978-0-660-19087-7.
- Simon, L.; Bousquet, J.; Lévesque, R. C.; Lalonde, M. (1993). "Origin and diversification of endomycorrhizal fungi and coincidence with vascular land plants". Nature. 363 (6424): 67–69. Bibcode:1993Natur.363...67S. doi:10.1038/363067a0.
- Hijri, M.; Sanders, IR. (2005). "Low gene copy number shows that arbuscular mycorrhizal fungi inherit genetically different nuclei". Nature. 433 (7022): 160–163. Bibcode:2005Natur.433..160H. doi:10.1038/nature03069. PMID 15650740.
- "Orchids and fungi: An unexpected case of symbiosis". American Journal of Botany. July 12, 2011. Retrieved 24 July 2012.
- den Bakker, Henk C.; Zuccarello, G. C.; Kuyper, TH. W.; Noordeloos, M. E. (2004). "Evolution and host specificity in the ectomycorrhizal genus Leccinum" (PDF). New Phytologist. 163: 201–215. doi:10.1111/j.1469-8137.2004.01090.x. Archived from the original (PDF) on 2011-07-24.
- Saari, S. K.; Campbell, C. D.; Russell, J.; Alexander, I. J.; Anderson, I. C. (2005). "Pine microsatellite markers allow roots and ectomycorrhizas to be linked to individual trees" (PDF). New Phytologist. 165 (1): 295–304. doi:10.1111/j.1469-8137.2004.01213.x. PMID 15720641.
- Rinaldi, A.C.; Comandini, O.; Kuyper, T.W. (2008). "Ectomycorrhizal fungal diversity: separating the wheat from the chaff" (PDF). Fungal Diversity. 33: 1–45.
- Simard, Suzanne W.; Perry, David A.; Jones, Melanie D.; Myrold, David D.; Durall, Daniel M. & Molina, Randy (1997). "Net transfer of carbon between ectomycorrhizal tree species in the field". Nature. 388 (6642): 579–582. doi:10.1038/41557.
- Fungi kill insects and feed host plants BNET.com
- Klironomos, J. N.; Hart, M. M. (2001). "Animal nitrogen swap for plant carbon". Nature. 410 (6829): 651–652. doi:10.1038/35070643. PMID 11287942.
- Cejpková, J; Gryndler, M; Hršelová, H; Kotrba, P; Řanda, Z; Greňová, I; Borovička, J. "Bioaccumulation of heavy metals, metalloids, and chlorine in ectomycorrhizae from smelter-polluted area". Environmental Pollution. 218: 176–185. doi:10.1016/j.envpol.2016.08.009.
- Martin, F.; Aerts, A.; et al. (2008). "The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis". Nature. 452 (7183): 88–92. Bibcode:2008Natur.452...88M. doi:10.1038/nature06556. PMID 18322534.
- Midgley, DJ; Chambers, SM; Cairney, JWG (2002). "Spatial distribution of fungal endophyte genotypes in a Woollsia pungens (Ericaceae) root system". Australian Journal of Botany. 50 (5): 559–565. doi:10.1071/BT02020.
- Read, D. J. & Perez-Moreno, J. (2003). "Mycorrhizas and nutrient cycling in ecosystems—a journey towards relevance?". New Phytologist. 157 (3): 475–492. doi:10.1046/j.1469-8137.2003.00704.x.
- Rayner, M. Cheveley (1915). "Obligate Symbiosis in Calluna vulgaris". Annals of Botany. 29 (113): 97–134.
- Kamieński, F. (1882). "Les organes végétatifs de Monotropa hypopitys L.". Mémoires de la Société nat. des Sciences naturelles et mathém. de Cherbourg, ser. 3, tom. 24. (Republished and translated, in: Berch SM, Massicotte HB, Tackaberry LE. 2005. Re-publication of a translation of 'The vegetative organs of Monotropa hypopitys L.' published by F. Kamienski in 1882, with an update on Monotropa mycorrhizas. Mycorrhiza 15:323-332.)
- Frank, A.B. (1885). "Über die auf Wurzelsymbiose beruhende Ernährung gewisser Bäume durch unterirdische Pilze". Ber. Deutsch. Bot. Gesells. 3: 128–145.
|Wikisource has the text of the 1920 Encyclopedia Americana article Mycorriza.|
- International Mycorrhiza Society International Mycorrhiza Society
- Mohamed Hijri: A simple solution to the coming phosphorus crisis video recommending agricultural mycorrhiza use to conserve phosphorus reserves & 85% waste problem @Ted.com
- Mycorrhizal Associations: The Web Resource Comprehensive illustrations and lists of mycorrhizal and nonmycorrhizal plants and fungi
- Mycorrhizas – a successful symbiosis Biosafety research into genetically modified barley
- MycorWiki a portal concerned with the biology and ecology of ectomycorrhizal fungi and other forest fungi.