Non-photochemical quenching (NPQ) is a mechanism employed by plants and algae to protect themselves from the adverse effects of high light intensity. It involves the quenching of singlet excited state chlorophylls (Chl) via enhanced internal conversion to the ground state (non-radiative decay), thus harmlessly dissipating excess excitation energy as heat through molecular vibrations. NPQ occurs in almost all photosynthetic eukaryotes (algae and plants), and helps to regulate and protect photosynthesis in environments where light energy absorption exceeds the capacity for light utilization in photosynthesis.
When a molecule of chlorophyll absorbs light it is promoted from its ground state to its first singlet excited state. The excited state then has three main fates. Either the energy is; 1. passed to another chlorophyll molecule by Förster resonance energy transfer (in this way excitation is gradually passed to the photochemical reaction centers (photosystem I and photosystem II) where energy is used in photosynthesis (called photochemical quenching); or 2. the excited state can return to the ground state by emitting the energy as heat (called non-photochemical quenching); or 3. the excited state can return to the ground state by emitting a photon (fluorescence).
In higher plants, the absorption of light continues to increase as light intensity increases, while the capacity for photosynthesis tends to saturate. Therefore there is the potential for the absorption of excess light energy by photosynthetic light harvesting systems. This excess excitation energy leads to an increase in the lifetime of singlet excited chlorophyll, increasing the chances of the formation of long-lived chlorophyll triplet states by inter-system crossing. Triplet chlorophyll is a potent photosensitiser of molecular oxygen forming singlet oxygen which can cause oxidative damage to the pigments, lipids and proteins of the photosynthetic thylakoid membrane. To counter this problem, one photoprotective mechanism is so-called non-photochemical quenching (NPQ), which relies upon the conversion and dissipation of the excess excitation energy into heat. NPQ involves conformational changes within the light harvesting proteins of photosystem (PS) II that bring about a change in pigment interactions causing the formation of energy traps. The conformational changes are stimulated by a combination of transmembrane proton gradient, the PsbS subunit of photosystem II and the enzymatic conversion of the carotenoid violaxanthin to zeaxanthin (the xanthophyll cycle).
Violaxanthin is a carotenoid downstream from chlorophyll a and b within the antenna of PS II and nearest to the special chlorophyll a located in the reaction center of the antenna. As light intensity increases, acidification of the thylakoid lumen takes place. This acidification leads to the protonation of the PsbS subunit of PS II. Along with the activation of enzyme violaxanthin de-epoxidase which eliminates an epoxide and forms an alkene on a six member ring of violaxanthin giving another carotenoid known as antheraxanthin. Violaxanthin contains two epoxides each bonded to a six member ring and when both are eliminated by de-epoxidase the carotenoid zeaxanthin is formed. Only violaxanthin is able to transport a photon to the special chlorophyll a. Antheraxanthin and zeaxanthin dissipate the energy from the photon as heat preserving the integrity of photosystem II. This dissipation of energy as heat is one form of non-photochemical quenching. 
Measurement of NPQ
Non-photochemical quenching is measured by the quenching of chlorophyll fluorescence and is distinguished from photochemical quenching by applying a bright light pulse to transiently saturate photochemical quenching thus removing its contribution from the observed quenching. Non-photochemical quenching is not affected if the pulse of light is short. During the pulse, the fluorescence reaches the level reached in the absence of any photochemical quenching, known as maximum fluorescence, .
Chlorophyll fluorescence can easily be measured with a chlorophyll fluorometer. Some fluorometers can calculate NPQ and photochemical quenching coefficients (including qP, qN, qE and NPQ), as well as light and dark adaptation parameters (including Fo, Fm, and Fv/Fm).
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