Pearson product-moment correlation coefficient

From Wikipedia, the free encyclopedia
  (Redirected from Pearson correlation)
Jump to: navigation, search
Not to be confused with Coefficient of determination.

In statistics, the Pearson product-moment correlation coefficient (/ˈpɪərsɨn/) (sometimes referred to as the PPMCC or PCC or Pearson's r) is a measure of the linear correlation (dependence) between two variables X and Y, giving a value between +1 and −1 inclusive, where 1 is total positive correlation, 0 is no correlation, and −1 is total negative correlation. It is widely used in the sciences as a measure of the degree of linear dependence between two variables. It was developed by Karl Pearson from a related idea introduced by Francis Galton in the 1880s.[1][2][3] Early work on the distribution of the sample correlation coefficient was carried out by Anil Kumar Gain[4] and R. A. Fisher[5][6] from the University of Cambridge.

Examples of scatter diagrams with different values of correlation coefficient (ρ)
Several sets of (xy) points, with the correlation coefficient of x and y for each set. Note that the correlation reflects the non-linearity and direction of a linear relationship (top row), but not the slope of that relationship (middle), nor many aspects of nonlinear relationships (bottom). N.B.: the figure in the center has a slope of 0 but in that case the correlation coefficient is undefined because the variance of Y is zero.

Definition[edit]

Pearson's correlation coefficient is the covariance of the two variables divided by the product of their standard deviations. The form of the definition involves a "product moment", that is, the mean (the first moment about the origin) of the product of the mean-adjusted random variables; hence the modifier product-moment in the name.

For a population[edit]

Pearson's correlation coefficient when applied to a population is commonly represented by the Greek letter ρ (rho) and may be referred to as the population correlation coefficient or the population Pearson correlation coefficient. The formula for ρ[7] is:

 \rho_{X,Y}= \frac{\operatorname{cov}(X,Y)}{\sigma_X \sigma_Y}
where:

The formula for ρ can be expressed in terms of mean and expectation. Since

Then the formula for ρ can also be written as

 \rho_{X,Y}=\frac{E[(X-\mu_X)(Y-\mu_Y)]}{\sigma_X\sigma_Y}
where:

The formula for ρ can be expressed in terms of uncentered moments. Since

  • \mu_X=E(X)
  • \mu_Y=E(Y)
  • \sigma_X^2=E[(X-E(X))^2]=E(X^2)-E(X)^2
  • \sigma_Y^2=E[(Y-E(Y))^2]=E(Y^2)-E(Y)^2
  • E[(X-\mu_X)(Y-\mu_Y)]=E[(X-E(X))(Y-E(Y))]=E(XY)-E(X)E(Y),\,

Then the formula for ρ can also be written as

\rho_{X,Y}=\frac{E(XY)-E(X)E(Y)}{\sqrt{E(X^2)-E(X)^2}~\sqrt{E(Y^2)- E(Y)^2}}.

For a sample[edit]

Pearson's correlation coefficient when applied to a sample is commonly represented by the letter r and may be referred to as the sample correlation coefficient or the sample Pearson correlation coefficient. We can obtain a formula for r by substituting estimates of the covariances and variances based on a sample into the formula above. So if we have one dataset {x1,...,xn} containing n values and another dataset {y1,...,yn} containing n values then that formula for r is:

r = r_{xy} =\frac{\sum ^n _{i=1}(x_i - \bar{x})(y_i - \bar{y})}{\sqrt{\sum ^n _{i=1}(x_i - \bar{x})^2} \sqrt{\sum ^n _{i=1}(y_i - \bar{y})^2}}
where:
  • n, x_i, y_i are defined as above
  • \bar{x}=\frac{1}{n}\sum_{i=1}^n x_i (the sample mean); and analogously for \bar{y}

This formula for r is used for the Microsoft Excel function CORREL.[8]

Alternative formulae for r are also available. One can use the following formula for r:

r = r_{xy} =\frac{\sum x_iy_i-n \bar{x} \bar{y}}{(n-1) s_x s_y}
where:

Rearranging gives us this formula for r:

r = r_{xy} =\frac{n\sum x_iy_i-\sum x_i\sum y_i}
{\sqrt{n\sum x_i^2-(\sum x_i)^2}~\sqrt{n\sum y_i^2-(\sum y_i)^2}}.
where:
  • n, x_i, y_i are defined as above
  • This formula suggests a convenient single-pass algorithm for calculating sample correlations, but, depending on the numbers involved, it can sometimes be numerically unstable.

Rearranging again gives us this[7] formula for r:

r = r_{xy} =\frac{\sum x_iy_i-n\bar{x}\bar{y}}
{\sqrt{(\sum x_i^2-n\bar{x}^2)}~\sqrt{(\sum y_i^2-n\bar{y}^2)}}.
where:
  • n, x_i, y_i, \bar{x}, \bar{y} are defined as above

An equivalent expression gives the formula for r as the mean of the products of the standard scores as follows:

r = r_{xy} =\frac{1}{n-1} \sum ^n _{i=1} \left( \frac{x_i - \bar{x}}{s_x} \right) \left( \frac{y_i - \bar{y}}{s_y} \right)
where
  • n, x_i, y_i, \bar{x}, \bar{y}, s_x, s_y are defined as above
  • \left( \frac{x_i - \bar{x}}{s_x} \right) is the standard score (and analogously for the standard score of y)

Mathematical properties[edit]

The absolute values of both the sample and population Pearson correlation coefficients are less than or equal to 1. Correlations equal to 1 or −1 correspond to data points lying exactly on a line (in the case of the sample correlation), or to a bivariate distribution entirely supported on a line (in the case of the population correlation). The Pearson correlation coefficient is symmetric: corr(X,Y) = corr(Y,X).

A key mathematical property of the Pearson correlation coefficient is that it is invariant to separate changes in location and scale in the two variables. That is, we may transform X to a + bX and transform Y to c + dY, where a, b, c, and d are constants with b, d > 0, without changing the correlation coefficient. (This fact holds for both the population and sample Pearson correlation coefficients.) Note that more general linear transformations do change the correlation: see a later section for an application of this.

Interpretation[edit]

The correlation coefficient ranges from −1 to 1. A value of 1 implies that a linear equation describes the relationship between X and Y perfectly, with all data points lying on a line for which Y increases as X increases. A value of −1 implies that all data points lie on a line for which Y decreases as X increases. A value of 0 implies that there is no linear correlation between the variables.

More generally, note that (Xi − X)(Yi − Y) is positive if and only if Xi and Yi lie on the same side of their respective means. Thus the correlation coefficient is positive if Xi and Yi tend to be simultaneously greater than, or simultaneously less than, their respective means. The correlation coefficient is negative if Xi and Yi tend to lie on opposite sides of their respective means. Moreover, the stronger is either tendency, the larger is the absolute value of the correlation coefficient.

Geometric interpretation[edit]

Regression lines for y=gx(x) [red] and x=gy(y) [blue]

For uncentered data, it is possible to obtain a relation between correlation coefficient and the angle \varphi between both possible regression lines y=gx(x) and x=gy(y). One can show[9] that r = sec\ \varphi – tan\ \varphi.

For centered data (i.e., data which have been shifted by the sample means of their respective variables so as to have an average of zero for each variable), the correlation coefficient can also be viewed as the cosine of the angle \ \theta between the two vectors of samples in N-dimensional space (for N samples of each variable)[10]:ch. 5 (as illustrated for a special case in the next paragraph).

Both the uncentered (non-Pearson-compliant) and centered correlation coefficients can be determined for a dataset. As an example, suppose five countries are found to have gross national products of 1, 2, 3, 5, and 8 billion dollars, respectively. Suppose these same five countries (in the same order) are found to have 11%, 12%, 13%, 15%, and 18% poverty. Then let x and y be ordered 5-element vectors containing the above data: x = (1, 2, 3, 5, 8) and y = (0.11, 0.12, 0.13, 0.15, 0.18).

By the usual procedure for finding the angle \ \theta between two vectors (see dot product), the uncentered correlation coefficient is:

 \cos \theta = \frac { \bold{x} \cdot \bold{y} } { \left\| \bold{x} \right\| \left\| \bold{y} \right\| } = \frac { 2.93 } { \sqrt { 103 } \sqrt { 0.0983 } } = 0.920814711.

Note that the above data were deliberately chosen to be perfectly correlated: y = 0.10 + 0.01 x. The Pearson correlation coefficient must therefore be exactly one. Centering the data (shifting x by E(x) = 3.8 and y by E(y) = 0.138) yields x = (−2.8, −1.8, −0.8, 1.2, 4.2) and y = (−0.028, −0.018, −0.008, 0.012, 0.042), from which

 \cos \theta = \frac { \bold{x} \cdot \bold{y} } { \left\| \bold{x} \right\| \left\| \bold{y} \right\| } = \frac { 0.308 } { \sqrt { 30.8 } \sqrt { 0.00308 } } = 1 = \rho_{xy},

as expected.

Interpretation of the size of a correlation[edit]

This figure gives a sense of how the usefulness of a Pearson correlation for predicting values varies with its magnitude. Given jointly normal X, Y with correlation ρ, 1 - \sqrt{1 - \rho^2} (plotted here as a function of ρ) is the factor by which a given prediction interval for Y may be reduced given the corresponding value of X. For example, if ρ = .5, then the 95% prediction interval of Y|X will be about 13% smaller than the 95% prediction interval of Y.

Several authors[11][12] have offered guidelines for the interpretation of a correlation coefficient. However, all such criteria are in some ways arbitrary and should not be observed too strictly.[12] The interpretation of a correlation coefficient depends on the context and purposes. A correlation of 0.8 may be very low if one is verifying a physical law using high-quality instruments, but may be regarded as very high in the social sciences where there may be a greater contribution from complicating factors.

Inference[edit]

A graph showing the minimum absolute value of Pearson's correlation coefficient that is significantly different from zero at the 0.05 level, for a given sample size.

Statistical inference based on Pearson's correlation coefficient often focuses on one of the following two aims:

  • One aim is to test the null hypothesis that the true correlation coefficient ρ is equal to 0, based on the value of the sample correlation coefficient r.
  • The other aim is to construct a confidence interval around r that has a given probability of containing ρ.

We discuss methods of achieving one or both of these aims below.

Using a permutation test[edit]

Permutation tests provide a direct approach to performing hypothesis tests and constructing confidence intervals. A permutation test for Pearson's correlation coefficient involves the following two steps:

  1. Using the original paired data (xiyi), randomly redefine the pairs to create a new data set (xiyi′), where the i′ are a permutation of the set {1,...,n}. The permutation i′ is selected randomly, with equal probabilities placed on all n! possible permutations. This is equivalent to drawing the i′ randomly "without replacement" from the set {1, ..., n}. A closely related and equally justified (bootstrapping) approach is to separately draw the i and the i′ "with replacement" from {1, ..., n};
  2. Construct a correlation coefficient r from the randomized data.

To perform the permutation test, repeat steps (1) and (2) a large number of times. The p-value for the permutation test is the proportion of the r values generated in step (2) that are larger than the Pearson correlation coefficient that was calculated from the original data. Here "larger" can mean either that the value is larger in magnitude, or larger in signed value, depending on whether a two-sided or one-sided test is desired.

Using a bootstrap[edit]

The bootstrap can be used to construct confidence intervals for Pearson's correlation coefficient. In the "non-parametric" bootstrap, n pairs (xiyi) are resampled "with replacement" from the observed set of n pairs, and the correlation coefficient r is calculated based on the resampled data. This process is repeated a large number of times, and the empirical distribution of the resampled r values are used to approximate the sampling distribution of the statistic. A 95% confidence interval for ρ can be defined as the interval spanning from the 2.5th to the 97.5th percentile of the resampled r values.

Testing using Student's t-distribution[edit]

For pairs from an uncorrelated bivariate normal distribution, the sampling distribution of a certain function of Pearson's correlation coefficient follows Student's t-distribution with degrees of freedom n − 2. Specifically, if the underlying variables have a bivariate normal distribution, the variable

t = r\sqrt{\frac{n-2}{1 - r^2}}

has a Student's t-distribution in the null case (zero correlation).[13] This also holds approximately even if the observed values are non-normal, provided sample sizes are not very small.[14] For determining the critical values for r the inverse of this transformation is also needed:

r = \frac{t}{\sqrt{n - 2 + t^2}}.

Alternatively, large sample approaches can be used.

Early work on the distribution of the sample correlation coefficient was carried out by Anil Kumar Gain[15] and R. A. Fisher[5][6]

Another early paper[16] provides graphs and tables for general values of ρ, for small sample sizes, and discusses computational approaches.

Using the exact distribution[edit]

For data that follows a bivariate normal distribution, the exact density function f(r) for the sample correlation coefficient r of a normal bivariate is[17][18]

f(r) = \frac{(n - 2)\, \mathbf{\Gamma}(n - 1) (1 - \rho^2)^{\frac{n - 1}{2}} (1 - r^2)^{\frac{n - 4}{2}}}{\sqrt{2\pi}\, \mathbf{\Gamma}\left(n - \frac{1}{2}\right) (1 - \rho r)^{n - \frac{3}{2}}} \,\mathbf{_2F_1}\left(\frac{1}{2}, \frac{1}{2}; \frac{2n - 1}{2}; \frac{\rho r + 1}{2}\right)
where:

In the special case when \,\rho = 0, the exact density function f(r) can be written as:

f(r) = \frac{(1 - r^2)^{\frac{n - 4}{2}}}{\mathbf{B}\left(\frac{1}{2}, \frac{n - 2}{2}\right)},
where:
  • \mathbf{B} is the beta function, which is one way of writing the density of a Student's t-distribution, as above.

Using the Fisher transformation[edit]

In practice, confidence intervals and hypothesis tests relating to ρ are usually carried out using the Fisher transformation:

F(r) = {1 \over 2}\ln{1 + r \over 1 - r} = \operatorname{arctanh}(r).

If F(r) is the Fisher transformation of r, and n is the sample size, then F(r) approximately follows a normal distribution with

\text{mean} = F(\rho) = \operatorname{arctanh}(\rho)    and standard error    \text{SE} = \frac{1}{\sqrt{n - 3}}.

Thus, a z-score is

z = \frac{x - \text{mean}}{\text{SE}} = [F(r) - F(\rho_0)]\sqrt{n - 3}

under the null hypothesis of that \rho = \rho_0, given the assumption that the sample pairs are independent and identically distributed and follow a bivariate normal distribution. Thus an approximate p-value can be obtained from a normal probability table. For example, if z = 2.2 is observed and a two-sided p-value is desired to test the null hypothesis that \rho = 0, the p-value is 2·Φ(−2.2) = 0.028, where Φ is the standard normal cumulative distribution function.

To obtain a confidence interval for ρ, we first compute a confidence interval for F(\rho):

100(1 - \alpha)\%\text{CI}: \operatorname{arctanh}(\rho) \in [\operatorname{arctanh}(r) \pm z_{\alpha/2}SE]


The inverse Fisher transformation bring the interval back to the correlation scale.

100(1 - \alpha)\%\text{CI}: \rho \in [\operatorname{tanh}(\operatorname{arctanh}(r) - z_{\alpha/2}SE), \operatorname{tanh}(\operatorname{arctanh}(r) + z_{\alpha/2}SE)]


For example, suppose we observe r = 0.3 with a sample size of n=50, and we wish to obtain a 95% confidence interval for ρ. The transformed value is arctanh(r) = 0.30952, so the confidence interval on the transformed scale is 0.30952 ± 1.96/√47, or (0.023624, 0.595415). Converting back to the correlation scale yields (0.024, 0.534).

Pearson's correlation and least squares regression analysis[edit]

The square of the sample correlation coefficient is typically denoted r2 and called the coefficient of determination. It estimates the fraction of the variance in Y that is explained by X in a simple linear regression. So if we have the observed dataset {y1,...yn} and the fitted dataset {f1,...fn}, and we denote the fitted dataset {f1,...fn} with {ŷ1,...ŷn}, then as a starting point the total variation in the Yi around their average value can be decomposed as follows


\sum_i (Y_i - \bar{Y})^2 = \sum_i (Y_i-\hat{Y}_i)^2 + \sum_i (\hat{Y}_i-\bar{Y})^2,

where the \hat{Y}_i are the fitted values from the regression analysis. This can be rearranged to give


1 = \frac{\sum_i (Y_i-\hat{Y}_i)^2}{\sum_i (Y_i - \bar{Y})^2} + \frac{\sum_i (\hat{Y}_i-\bar{Y})^2}{\sum_i (Y_i - \bar{Y})^2}.

The two summands above are the fraction of variance in Y that is explained by X (right) and that is unexplained by X (left).

Next, we apply a property of least square regression models, that the sample covariance between \hat{Y}_i and Y_i-\hat{Y}_i is zero. Thus, the sample correlation coefficient between the observed and fitted response values in the regression can be written


\begin{align}
r(Y,\hat{Y}) &= \frac{\sum_i(Y_i-\bar{Y})(\hat{Y}_i-\bar{Y})}{\sqrt{\sum_i(Y_i-\bar{Y})^2\cdot \sum_i(\hat{Y}_i-\bar{Y})^2}}\\
&= \frac{\sum_i(Y_i-\hat{Y}_i+\hat{Y}_i-\bar{Y})(\hat{Y}_i-\bar{Y})}{\sqrt{\sum_i(Y_i-\bar{Y})^2\cdot \sum_i(\hat{Y}_i-\bar{Y})^2}}\\
&= \frac{ \sum_i [(Y_i-\hat{Y}_i)(\hat{Y}_i-\bar{Y}) +(\hat{Y}_i-\bar{Y})^2 ]}{\sqrt{\sum_i(Y_i-\bar{Y})^2\cdot \sum_i(\hat{Y}_i-\bar{Y})^2}}\\
&= \frac{ \sum_i (\hat{Y}_i-\bar{Y})^2 }{\sqrt{\sum_i(Y_i-\bar{Y})^2\cdot \sum_i(\hat{Y}_i-\bar{Y})^2}}\\

&= \sqrt{\frac{\sum_i(\hat{Y}_i-\bar{Y})^2}{\sum_i(Y_i-\bar{Y})^2}}.
\end{align}

Thus


r(Y,\hat{Y})^2 = \frac{\sum_i(\hat{Y}_i-\bar{Y})^2}{\sum_i(Y_i-\bar{Y})^2}
where
  • r(Y,\hat{Y})^2 is the proportion of variance in Y explained by a linear function of X.

That equation can be written as:


r(Y,\hat{Y})^2 = \frac{SS_\text{reg}}{SS_\text{tot}}
where

Sensitivity to the data distribution[edit]

Existence[edit]

The population Pearson correlation coefficient is defined in terms of moments, and therefore exists for any bivariate probability distribution for which the population covariance is defined and the marginal population variances are defined and are non-zero. Some probability distributions such as the Cauchy distribution have undefined variance and hence ρ is not defined if X or Y follows such a distribution. In some practical applications, such as those involving data suspected to follow a heavy-tailed distribution, this is an important consideration. However, the existence of the correlation coefficient is usually not a concern; for instance, if the range of the distribution is bounded, ρ is always defined.

Sample size[edit]

  • If the sample size is moderate or large and the population is normal then in the case of the bivariate normal distribution, the sample correlation coefficient is the maximum likelihood estimate of the population correlation coefficient, and is asymptotically unbiased and efficient, which roughly means that it is impossible to construct a more accurate estimate than the sample correlation coefficient.
  • If the sample size is large and the population is not normal, then the sample correlation coefficient remains approximately unbiased, but may not be efficient.
  • If the sample size is large then sample correlation coefficient is a consistent estimator of the population correlation coefficient as long as the sample means, variances, and covariance are consistent (which is guaranteed when the law of large numbers can be applied).
  • If the sample size is small then the sample correlation coefficient r is not an unbiased estimate of ρ.[7] The adjusted correlation coefficient must be used instead: see elsewhere in this article for the definition.

Robustness[edit]

Like many commonly used statistics, the sample statistic r is not robust,[19] so its value can be misleading if outliers are present.[20][21] Specifically, the PMCC is neither distributionally robust,[citation needed] nor outlier resistant[19] (see Robust statistics#Definition). Inspection of the scatterplot between X and Y will typically reveal a situation where lack of robustness might be an issue, and in such cases it may be advisable to use a robust measure of association. Note however that while most robust estimators of association measure statistical dependence in some way, they are generally not interpretable on the same scale as the Pearson correlation coefficient.

Statistical inference for Pearson's correlation coefficient is sensitive to the data distribution. Exact tests, and asymptotic tests based on the Fisher transformation can be applied if the data are approximately normally distributed, but may be misleading otherwise. In some situations, the bootstrap can be applied to construct confidence intervals, and permutation tests can be applied to carry out hypothesis tests. These non-parametric approaches may give more meaningful results in some situations where bivariate normality does not hold. However the standard versions of these approaches rely on exchangeability of the data, meaning that there is no ordering or grouping of the data pairs being analyzed that might affect the behavior of the correlation estimate.

A stratified analysis is one way to either accommodate a lack of bivariate normality, or to isolate the correlation resulting from one factor while controlling for another. If W represents cluster membership or another factor that it is desirable to control, we can stratify the data based on the value of W, then calculate a correlation coefficient within each stratum. The stratum-level estimates can then be combined to estimate the overall correlation while controlling for W.[22]

Variants[edit]

Variations of the correlation coefficient can be calculated for different purposes. Here are some examples.

Adjusted correlation coefficient[edit]

The sample correlation coefficient r is not an unbiased estimate of ρ. For data that follows a bivariate normal distribution, the expectation E(r) for the sample correlation coefficient r of a normal bivariate is[23]

E\left(r\right) = \rho - \frac{\rho \left(1 - \rho^2\right)}{2n} + \cdots, \quad therefore r is a biased estimator of \,\rho.

The unique minimum variance unbiased estimator radj is given by[24]

(1) \qquad r_{adj} = r \mathbf{_2F_1}\left(\frac{1}{2}, \frac{1}{2}; \frac{n-1}{2}; 1-r^2\right),.
where:

An approximately unbiased estimator radj can be obtained[citation needed] by truncating E(r) and solving this truncated equation:

(2) \qquad r = E\left(r\right) = r_{adj} - \frac{r_{adj} \left(1 - r_{adj}^2\right)}{2n}.

The solution[citation needed] to equation (2) is:

(3) \qquad r_{adj} = r \left[1 + \frac{1 - r^2}{2n}\right],
where in (3):
  • r, n are defined as above,
  • radj is a suboptimal estimator,[citation needed][clarification needed]
  • radj can also be obtained by maximizing log(f(r)),
  • radj has minimum variance for large values of n,
  • radj has a bias of order 1/(n-1).

Another proposed[7] adjusted correlation coefficient is:[citation needed]

r_{adj}=\sqrt{1-\frac{(1-r^2)(n-1)}{(n-2)}}.

Note that radjr for large values of n.

Weighted correlation coefficient[edit]

Suppose observations to be correlated have differing degrees of importance that can be expressed with a weight vector w. To calculate the correlation between vectors x and y with the weight vector w (all of length n),[25][26]

  • Weighted mean:
\operatorname{m}(x; w) = {\sum_i w_i x_i \over \sum_i w_i}.
  • Weighted covariance
\operatorname{cov}(x,y;w) = {\sum_i w_i (x_i - \operatorname{m}(x; w)) (y_i - \operatorname{m}(y; w)) \over \sum_i w_i }.
  • Weighted correlation
\operatorname{corr}(x,y;w) = {\operatorname{cov}(x,y;w) \over \sqrt{\operatorname{cov}(x,x;w) \operatorname{cov}(y,y;w)}}.

Reflective correlation coefficient[edit]

The reflective correlation is a variant of Pearson's correlation in which the data are not centered around their mean values.[citation needed] The population reflective correlation is


\text{Corr}_r(X,Y) = \frac{E[XY]}{\sqrt{EX^2\cdot EY^2}}.

The reflective correlation is symmetric, but it is not invariant under translation:


\text{Corr}_r(X, Y) = \text{Corr}_r(Y, X) = \text{Corr}_r(X, bY) \neq \text{Corr}_r(X, a + b Y), \quad a \neq 0, b > 0.

The sample reflective correlation is


rr_{xy} = \frac{\sum x_i y_i}{\sqrt{(\sum x_i^2)(\sum y_i^2)}}.

The weighted version of the sample reflective correlation is


rr_{xy, w} = \frac{\sum w_i x_i y_i}{\sqrt{(\sum w_i x_i^2)(\sum w_i y_i^2)}}.

Scaled correlation coefficient[edit]

Main article: Scaled correlation

Scaled correlation is a variant of Pearson's correlation in which the range of the data is restricted intentionally and in a controlled manner to reveal correlations between fast components in time series.[27] Scaled correlation is defined as average correlation across short segments of data.

Let K be the number of segments that can fit into the total length of the signal T for a given scale s:

K = \operatorname{round}\left(\frac{T}{s}\right).

The scaled correlation across the entire signals \bar{r}_s is then computed as

\bar{r}_s = \frac{1}{K} \sum\limits_{k=1}^K r_k,

where r_k is Pearson's coefficient of correlation for segment k.

By choosing the parameter s, the range of values is reduced and the correlations on long time scale are filtered out, only the correlations on short time scales being revealed. Thus, the contributions of slow components are removed and those of fast components are retained.

Pearson’s distance[edit]

A distance metric for two variables X and Y known as Pearson's distance can be defined from their correlation coefficient as[28]

d_{X,Y}=1-\rho_{X,Y}.

Considering that the Pearson correlation coefficient falls between [−1, 1], the Pearson distance lies in [0, 2].

Heavy noise conditions[edit]

Under heavy noise conditions, extracting the correlation coefficient between two sets of stochastic variables is nontrivial, in particular where Canonical Correlation Analysis reports on degraded correlation values due to the heavy noise contributions. A generalization of the approach is given elsewhere.[29]

Removing correlation[edit]

It is always possible to remove the correlation between random variables with a linear transformation, even if the relationship between the variables is nonlinear. A presentation of this result for population distributions is given by Cox & Hinkley.[30]

A corresponding result exists for sample correlations, in which the sample correlation is reduced to zero. Suppose a vector of n random variables is sampled m times. Let X be a matrix where X_{i,j} is the jth variable of sample i. Let Z_{m,m} be an m by m square matrix with every element 1. Then D is the data transformed so every random variable has zero mean, and T is the data transformed so all variables have zero mean and zero correlation with all other variables – the sample covariance matrix of T will be the identity matrix. This has to be further divided by the standard deviation to get unit variance. The transformed variables will be uncorrelated, even though they may not be independent.

D = X -\frac{1}{m} Z_{m,m} X


T = D (D^T D)^{-\frac{1}{2}},

where an exponent of −1/2 represents the matrix square root of the inverse of a matrix. The covariance matrix of T will be the identity matrix. If a new data sample x is a row vector of n elements, then the same transform can be applied to x to get the transformed vectors d and t:

d = x - \frac{1}{m} Z_{1,m} X,


t = d (D^T D)^{-\frac{1}{2}}.

This decorrelation is related to principal components analysis for multivariate data.

See also[edit]

References[edit]

  1. ^ See:
  2. ^ Karl Pearson (June 20, 1895) "Notes on regression and inheritance in the case of two parents," Proceedings of the Royal Society of London, 58 : 240–242.
  3. ^ Stigler, Stephen M. (1989). "Francis Galton's Account of the Invention of Correlation". Statistical Science 4 (2): 73–79. doi:10.1214/ss/1177012580. JSTOR 2245329. 
  4. ^ Gayen, A.K. (1951). "The frequency distribution of the product moment correlation coefficient in random samples of any size draw from non-normal universes". Biometrika 38: 219–247. doi:10.1093/biomet/38.1-2.219. 
  5. ^ a b Fisher, R.A. (1915). "Frequency distribution of the values of the correlation coefficient in samples from an indefinitely large population". Biometrika 10 (4): 507–521. doi:10.1093/biomet/10.4.507. 
  6. ^ a b Fisher, R.A. (1921). "On the probable error of a coefficient of correlation deduced from a small sample" (PDF). Metron 1 (4): 3–32. Retrieved 2009-03-25. 
  7. ^ a b c d e Real Statistics Using Excel: Correlation: Basic Concepts, retrieved 2015-02-22
  8. ^ CORREL function, Microsoft Office support pages, retrieved 2015-02-22
  9. ^ Schmid Jr., John (December 1947). "The Relationship between the Coefficient of Correlation and the Angle Included between Regression Lines". The Journal of Educational Research 41 (4). JSTOR 27528906. 
  10. ^ Rummel, R. J. (1976). "Understanding Correlation". 
  11. ^ A. Buda and A.Jarynowski (2010) Life-time of correlations and its applications vol.1, Wydawnictwo Niezalezne: 5–21, December 2010, ISBN 978-83-915272-9-0
  12. ^ a b Cohen, J. (1988). Statistical power analysis for the behavioral sciences (2nd ed.)
  13. ^ Rahman, N.A. (1968) A Course in Theoretical Statistics, Charles Griffin and Company, 1968
  14. ^ Kendall, M.G., Stuart, A. (1973) The Advanced Theory of Statistics, Volume 2: Inference and Relationship, Griffin. ISBN 0-85264-215-6 (Section 31.19)
  15. ^ Gain, A.K. (1951). "The frequency distribution of the product moment correlation coefficient in random samples of any size draw from non-normal universes". Biometrika 38: 219–247. doi:10.1093/biomet/38.1-2.219. 
  16. ^ Soper, H.E.; Young, A.W.; Cave, B.M.; Lee, A.; Pearson, K. (1917). "On the distribution of the correlation coefficient in small samples. Appendix II to the papers of "Student" and R. A. Fisher. A co-operative study". Biometrika 11: 328–413. doi:10.1093/biomet/11.4.328. 
  17. ^ Kenney, J. F. and Keeping, E. S., Mathematics of Statistics, Pt. 2, 2nd ed. Princeton, NJ: Van Nostrand, 1951.
  18. ^ Correlation Coefficient – Bivariate Normal Distribution
  19. ^ a b Wilcox, Rand R. (2005). Introduction to robust estimation and hypothesis testing. Academic Press. 
  20. ^ Devlin, Susan J; Gnanadesikan, R; Kettenring J.R. (1975). "Robust Estimation and Outlier Detection with Correlation Coefficients". Biometrika 62 (3): 531–545. doi:10.1093/biomet/62.3.531. JSTOR 2335508. 
  21. ^ Huber, Peter. J. (2004). Robust Statistics. Wiley. [page needed]
  22. ^ Katz., Mitchell H. (2006) Multivariable Analysis – A Practical Guide for Clinicians. 2nd Edition. Cambridge University Press. ISBN 978-0-521-54985-1. ISBN 0-521-54985-X doi:10.2277/052154985X
  23. ^ Hotelling, H. (1953). "New Light on the Correlation Coefficient and its Transforms". Journal of the Royal Statistical Society. Series B (Methodological) 15 (2): 193–232. JSTOR 2983768. 
  24. ^ Olkin, Ingram; Pratt,John W. (March 1958). "Unbiased Estimation of Certain Correlation Coefficients". The Annals of Mathematical Statistics 29 (1): 201–211. doi:10.1214/aoms/1177706717. JSTOR 2237306. .
  25. ^ http://sci.tech-archive.net/Archive/sci.stat.math/2006-02/msg00171.html
  26. ^ A MATLAB Toolbox for computing Weighted Correlation Coefficients
  27. ^ Nikolić, D; Muresan, RC; Feng, W; Singer, W (2012). "Scaled correlation analysis: a better way to compute a cross-correlogram" (PDF). European Journal of Neuroscience: 1–21. doi:10.1111/j.1460-9568.2011.07987.x. 
  28. ^ Fulekar (Ed.), M.H. (2009) Bioinformatics: Applications in Life and Environmental Sciences, Springer (pp. 110) ISBN 1-4020-8879-5
  29. ^ Moriya, N. (2008). Fengshan Yang, ed. "Noise-Related Multivariate Optimal Joint-Analysis in Longitudinal Stochastic Processes". Nova Science Publishers, Inc. pp. 223–260. ISBN 978-1-60021-976-4. 
  30. ^ Cox, D.R., Hinkley, D.V. (1974) Theoretical Statistics, Chapman & Hall (Appendix 3) ISBN 0-412-12420-3

External links[edit]