Philip Bourne

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Phil Bourne
Phil E Bourne.jpg
Philip Eric Bourne
Born
Philip Eric Bourne

1953 (age 66–67)[1]
Alma materFlinders University (PhD)
Known for
Spouse(s)
Roma Chalupa
(m. 1983)
Children
  • Scott Bourne (b. 1985)
  • Melanie Bourne (b. 1997)
Awards
Scientific career
FieldsData Science
Computational Biology
Scholarly communication[9]
Bioinformatics
Institutions
ThesisCrystal structure analyses : metal complexes of biological interest and the stereochemistry of substituted phonylbicyclooctanes (1979)
Notable studentsWerner G. Krebs
Websitedatascience.virginia.edu/people/phil-bourne

Philip Eric Bourne (born 1953) is an Australian bioinformatician,[10] non-fiction writer,[2] and businessman.[4] He is currently Stephenson Chair of Data Science and Director of the School of Data Science and Professor of Biomedical Engineering[11] and was the first Associate Director for Data Science at the National Institutes of Health, where his projects include managing the Big Data to Knowledge initiative, and formerly Associate Vice Chancellor at UCSD.[12] He has contributed to textbooks and is a strong supporter of open-access literature and software. His diverse interests have spanned structural biology, medical informatics, information technology, structural bioinformatics, scholarly communication and pharmaceutical sciences.[10] His papers are highly cited, and he has an h-index above 50.[13][14][9]

Education[edit]

Bourne was trained as a physical chemist in the mid to late 1970s and obtained his PhD in 1979[1] at the Flinders University.

Career and research[edit]

After his PhD, Bourne moved to the University of Sheffield to do postdoctoral research during 1979-1981,[15] followed by a move to Columbia University, New York, in 1981. In 1995 he moved to University of California, San Diego, where he was a Professor in the Department of Pharmacology. In 2014, he moved to NIH to become its Associate Director for Data Science. In January 2017, it was announced that he had accepted a position as director of University of Virginia's Data Science Institute.[16]

He is known for writing the book Unix for VMS Users (1990)[2] and for being co-developer of the Combinatorial Extension algorithm for the three-dimensional alignment of protein structures,[17] together with I. Shindyalov (1998). In 1999 he became co-director of the Protein Data Bank.[18] He was president of the ISCB (2002–2003).[19] He is a fellow of the American Medical Informatics Association since 2002.[20] He is founding Editor in Chief of PLoS Computational Biology (2005-). In 2007 he co-founded SciVee.[4] Bourne is an editor of the popular Ten Simple Rules series of editorials published in the PLoS Computational Biology journal.[21] He has served as the Associate Vice Chancellor for Innovation and Industrial Alliances[12] and a professor of pharmacology at the Skaggs School of Pharmacy and Pharmaceutical Sciences at the University of California, San Diego (UCSD).[22][23] He is an advisor to the Hypothes.is project[24] and Associate Director for Data Science at the National Institutes of Health where his projects include managing the Big Data to Knowledge initiative.[25][26]

Publications[edit]

Bourne is author of numerous scientific articles and book chapters and editor of the Structural Bioinformatics textbook.[27][28] and Pharmacy Informatics[29] Other publications[9] include:

  • Structural Bioinformatics 1st edition [27]
  • Structural Bioinformatics 2nd edition[28]
  • Pharmacy Informatics[29]
  • Unix for Vms Users[2]
  • Bourne, Philip E. (1997-01-01). A Cookbook for Serving the Internet for UNIX. Prentice Hall. ISBN 9780135199923.
  • Hart, David L.; Bourne, Philip E. (1998-08-12). Mac OS 8 Web Server Cookbook (1st ed.). Prentice Hall PTR. ISBN 9780135200162.
  • Bourne, Philip E. (2000-01-01). Underground Guide Unix. Prentice Hall. ISBN 9780131844582.
  • Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T. N.; Weissig, H.; Shindyalov, I. N.; Bourne, P. E. (2000-01-01). "The Protein Data Bank". Nucleic Acids Research. 28 (1): 235–242. doi:10.1093/nar/28.1.235. ISSN 0305-1048. PMC 102472. PMID 10592235.

Awards and honors[edit]

Bourne was elected Fellow of the AAAS under Pharmaceutical Sciences in 2011[5] and Fellow of the International Society for Computational Biology (ISCB) in 2011.[6] In 2010 he won Microsoft's Jim Gray e-Science award[7] and in 2009 won the Benjamin Franklin Award (2009).[8][30]

Personal life[edit]

Bourne has been married since 1983 to Roma Chalupa and they have two children: Scott Bourne (1985-) and Melanie Bourne (1997-).[citation needed] His interests include motorcycles,[31] flying, and hiking

References[edit]

  1. ^ a b Bourne, Philip Eric (1979). Crystal structure analyses : metal complexes of biological interest and the stereochemistry of substituted phonylbicyclooctanes (PhD thesis). Flinders University. OCLC 708090572.
  2. ^ a b c d Bourne, Phil E (1990). Unix for VMS Users. Digital Press Newton, MA, USA. ISBN 1-55558-034-3.
  3. ^ Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T.; Weissig, H.; Shindyalov, I.; Bourne, P. (2000). "The Protein Data Bank". Nucleic Acids Research. 28 (1): 235–242. doi:10.1093/nar/28.1.235. PMC 102472. PMID 10592235.
  4. ^ a b c Fink, JL; Bourne, PE (2007). "Reinventing Scholarly Communication for the Electronic Age". CTWatch Quarterly. 3 (3).
  5. ^ a b "Dr. Phil Bourne elected AAAS Fellow under Pharmaceutical Sciences". Pharmacy.ucsd.edu. Retrieved 2011-02-27.
  6. ^ a b "ISCB fellows".
  7. ^ a b "Philip E. Bourne wins Microsoft's 2010 Jim Gray eScience Award". Eurekalert.org. 2010-10-18. Retrieved 2011-02-27.
  8. ^ a b "Benjamin Franklin Award". Bioinformatics.org. Retrieved 2011-02-27.
  9. ^ a b c Philip Bourne publications indexed by Google Scholar Edit this at Wikidata
  10. ^ a b Philip Bourne publications indexed by the Scopus bibliographic database. (subscription required)
  11. ^ https://engineering.virginia.edu/faculty/philip-e-bourne
  12. ^ a b http://pharmacy.ucsd.edu/news/Appointment-of-Associate-VC-for-Innovation-%20Industry-Alliances.pdf
  13. ^ page at the University of Virginia
  14. ^ bournes old website
  15. ^ Clegg, G. A.; Stansfield, R. F. D.; Bourne, P. E.; Harrison, P. M. (1980). "Helix packing and subunit conformation in horse spleen apoferritin". Nature. 288 (5788): 298–300. doi:10.1038/288298a0. PMID 7432529.
  16. ^ https://www.news.virginia.edu/content/uva-names-nih-researcher-new-director-data-science-institute
  17. ^ Shindyalov, I. N.; Bourne, P. E. (1998). "Protein structure alignment by incremental combinatorial extension (CE) of the optimal path". Protein Engineering Design and Selection. 11 (9): 739–747. doi:10.1093/protein/11.9.739. PMID 9796821.
  18. ^ Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T.; Weissig, H.; Shindyalov, I.; Bourne, P. (2000). "The Protein Data Bank". Nucleic Acids Research. 28 (1): 235–242. doi:10.1093/nar/28.1.235. PMC 102472. PMID 10592235.
  19. ^ "ISCB — Past Presidents". Archived from the original on September 3, 2015. Retrieved September 3, 2015.
  20. ^ Greenes, R. A.; Madsen, E.; Miller, R. A. (2003). "American College of Medical Informatics Fellows and International Associates, 2002". Journal of the American Medical Informatics Association. 10 (3): 281–286. doi:10.1197/jamia.M1326. PMC 400512.
  21. ^ Ten Simple Rules
  22. ^ http://www.sdsc.edu/pb/ The Bourne lab web page
  23. ^ http://www.sdsc.edu/~bourne/CV.pdf Philip E. Bourne Ph.D. CV
  24. ^ Hypothes.is official website
  25. ^ NIH Names Dr. Philip E. Bourne First Associate Director for Data Science
  26. ^ Margolis, R.; Derr, L.; Dunn, M.; Huerta, M.; Larkin, J.; Sheehan, J.; Guyer, M.; Green, E. D. (2014). "The National Institutes of Health's Big Data to Knowledge (BD2K) initiative: capitalizing on biomedical big data". Journal of the American Medical Informatics Association. 21 (6): 957–8. doi:10.1136/amiajnl-2014-002974. ISSN 1067-5027. PMC 4215061. PMID 25008006.
  27. ^ a b Bourne, Philip E.; Weissig, Helga (2003). Structural Bioinformatics. John Wiley & Sons.
  28. ^ a b Gu, Jenny; Bourne, Philip E. (March 2009). Structural Bioinformatics (2nd ed.). Wiley-Blackwell. ISBN 0-470-18105-2.
  29. ^ a b Anderson, Philip O.; Bourne, Philip E. (December 2009). Pharmacy Informatics. CRC Press. ISBN 1-4200-7175-0.
  30. ^ "The Bourne Commendation: Open Access Evangelist Wins 2009 Benjamin Franklin Award". Bio-itworld.com. Retrieved 2011-02-27.
  31. ^ OFL | Philip Bourne | Travel Blog


Preceded by
Russ Altman
President of the
International Society for Computational Biology

2002 – 2003
Succeeded by
Michael Gribskov

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