Philip Bourne

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Phil Bourne
Phil E Bourne.jpg
Philip Eric Bourne
Born Philip Eric Bourne
1953 (age 62–63)[1]
Residence Maryland
Fields Bioinformatics
Institutions
Alma mater Flinders University (PhD)
Thesis Crystal structure analyses : metal complexes of biological interest and the stereochemistry of substituted phonylbicyclooctanes[1] (1979)
Notable students Werner G. Krebs
Known for
Notable awards
Spouse Roma Chalupa
Children
  • Scott Bourne (b. 1985)
  • Melanie Bourne (b. 1997)
Website
www.sdsc.edu/pb

Philip Eric Bourne (born 1953) is a United States researcher in health informatics,[8] former Associate Vice Chancellor at UCSD,[9] non-fiction writer,[2] and entrepreneur.[4] He is the first Associate Director for Data Science at the National Institutes of Health, where his projects include managing the Big Data to Knowledge initiative. He has contributed to textbooks and is a strong supporter of open-access literature and software. His diverse interests have spanned structural biology, medical informatics, information technology, structural bioinformatics, scholarly communication and pharmaceutical sciences.[8] His papers are highly cited, and he has an h-index above 50.[10]

Career[edit]

Bourne was trained as a physical chemist in the mid to late 1970s and obtained his PhD in 1979[1] at the The Flinders University of South Australia. He moved to the University of Sheffield to do postdoctoral research during 1979-1981,[11] followed by a move to Columbia University, New York, in 1981. In 1995 he moved to University of California, San Diego, where he was a Professor in the Department of Pharmacology. In 2014, he moved to NIH to become its Associate Director for Data Science.

He is known for writing the book Unix for VMS Users (1990)[2] and for being co-developer of the Combinatorial Extension algorithm for the three-dimensional alignment of protein structures,[12] together with I. Shindyalov (1998). In 1999 he became co-director of the Protein Data Bank.[13] He was president of the ISCB (2002–2003).[14] He is a fellow of the American Medical Informatics Association since 2002.[15] He is founding Editor in Chief of PLoS Computational Biology (2005-). In 2007 he co-founded SciVee.[4] Bourne is an editor of the popular Ten Simple Rules series of editorials published in the PLoS Computational Biology journal.[16] He has served as the Associate Vice Chancellor for Innovation and Industrial Alliances[9] and a professor of pharmacology at the Skaggs School of Pharmacy and Pharmaceutical Sciences at the University of California, San Diego (UCSD).[17][18] He is an advisor to the Hypothes.is project[19] and Associate Director for Data Science at the National Institutes of Health where his projects include managing the Big Data to Knowledge initiative.[20][21]

He is author of numerous scientific articles and book chapters and editor of the Structural Bioinformatics textbook.[22][23] and Pharmacy Informatics[24]

Awards[edit]

He was elected Fellow of the AAAS under Pharmaceutical Sciences in 2011[5] and fellow of the ISCB in 2011.[6] In 2010 he won Microsoft's Jim Gray e-Science award[7] and in 2009 won the Benjamin Franklin Award (2009).[25][26]

Personal[edit]

Bourne has been married since 1983 to Roma Chalupa and they have two children: Scott Bourne (1985-) and Melanie Bourne (1997-).[citation needed] His interests include motorcycles,[27] flying, and hiking.

Selected publications[edit]

References[edit]

  1. ^ a b c Bourne, Philip Eric (1979). Crystal structure analyses : metal complexes of biological interest and the stereochemistry of substituted phonylbicyclooctanes (PhD thesis). Flinders University. OCLC 708090572. 
  2. ^ a b c Bourne, Phil E (1990). Unix for VMS Users. Digital Press Newton, MA, USA. ISBN 1-55558-034-3. 
  3. ^ Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T.; Weissig, H.; Shindyalov, I.; Bourne, P. (2000). "The Protein Data Bank". Nucleic Acids Research. 28 (1): 235–242. doi:10.1093/nar/28.1.235. PMC 102472free to read. PMID 10592235. 
  4. ^ a b c Fink, JL; Bourne, PE (2007). "Reinventing Scholarly Communication for the Electronic Age". CTWatch Quarterly. 3 (3). 
  5. ^ a b "Dr. Phil Bourne elected AAAS Fellow under Pharmaceutical Sciences". Pharmacy.ucsd.edu. Retrieved 2011-02-27. 
  6. ^ a b "ISCB fellows". 
  7. ^ a b "Philip E. Bourne wins Microsoft's 2010 Jim Gray eScience Award". Eurekalert.org. 2010-10-18. Retrieved 2011-02-27. 
  8. ^ a b Philip Bourne's publications indexed by the Scopus bibliographic database, a service provided by Elsevier. (subscription required)
  9. ^ a b http://pharmacy.ucsd.edu/news/Appointment-of-Associate-VC-for-Innovation-%20Industry-Alliances.pdf
  10. ^ Philip Bourne on Google Scholar 
  11. ^ Clegg, G. A.; Stansfield, R. F. D.; Bourne, P. E.; Harrison, P. M. (1980). "Helix packing and subunit conformation in horse spleen apoferritin". Nature. 288 (5788): 298–300. doi:10.1038/288298a0. PMID 7432529. 
  12. ^ Shindyalov, I. N.; Bourne, P. E. (1998). "Protein structure alignment by incremental combinatorial extension (CE) of the optimal path". Protein Engineering Design and Selection. 11 (9): 739–747. doi:10.1093/protein/11.9.739. PMID 9796821. 
  13. ^ Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T.; Weissig, H.; Shindyalov, I.; Bourne, P. (2000). "The Protein Data Bank". Nucleic Acids Research. 28 (1): 235–242. doi:10.1093/nar/28.1.235. PMC 102472free to read. PMID 10592235. 
  14. ^ "ISCB — Past Presidents". Archived from the original on September 3, 2015. Retrieved September 3, 2015. 
  15. ^ Greenes, R. A.; Madsen, E.; Miller, R. A. (2003). "American College of Medical Informatics Fellows and International Associates, 2002". Journal of the American Medical Informatics Association. 10 (3): 281–286. doi:10.1197/jamia.M1326. 
  16. ^ Ten Simple Rules
  17. ^ http://www.sdsc.edu/pb/ The Bourne lab web page
  18. ^ http://www.sdsc.edu/~bourne/CV.pdf Philip E. Bourne Ph.D. CV
  19. ^ Hypothes.is official website
  20. ^ NIH Names Dr. Philip E. Bourne First Associate Director for Data Science
  21. ^ Margolis, R.; Derr, L.; Dunn, M.; Huerta, M.; Larkin, J.; Sheehan, J.; Guyer, M.; Green, E. D. (2014). "The National Institutes of Health's Big Data to Knowledge (BD2K) initiative: capitalizing on biomedical big data". Journal of the American Medical Informatics Association. 21 (6): 957–8. doi:10.1136/amiajnl-2014-002974. ISSN 1067-5027. PMC 4215061free to read. PMID 25008006. 
  22. ^ Bourne, Philip E.; Weissig, Helga (2003). Structural Bioinformatics. John Wiley & Sons. 
  23. ^ Gu, Jenny; Bourne, Philip E. (March 2009). Structural Bioinformatics (2nd ed.). Wiley-Blackwell. ISBN 0-470-18105-2. 
  24. ^ Anderson, Philip O.; Bourne, Philip E. (December 2009). Pharmacy Informatics. CRC Press. ISBN 1-4200-7175-0. 
  25. ^ "Benjamin Franklin Award". Bioinformatics.org. Retrieved 2011-02-27. 
  26. ^ "The Bourne Commendation: Open Access Evangelist Wins 2009 Benjamin Franklin Award". Bio-itworld.com. Retrieved 2011-02-27. 
  27. ^ OFL | Philip Bourne | Travel Blog

External links[edit]

Preceded by
Russ Altman
President of the
International Society for Computational Biology

2002 – 2003
Succeeded by
Michael Gribskov