|Phyllody induced by phytoplasma infection on a coneflower (Echinacea purpurea).|
"Ca. Phytoplasma allocasuarinae"
(as of March 2014)
Phytoplasmas are specialised bacteria that are obligate parasites of plant phloem tissue and transmitting insects (vectors). They were discovered by scientists in 1967 and were named mycoplasma-like organisms or MLOs. They cannot be cultured in vitro in cell-free media. They are characterised by their lack of a cell wall, a pleiomorphic or filamentous shape, normally with a diameter less than 1 μm, and their very small genomes.
Phytoplasmas are pathogens of agriculturally important plants, including coconut, sugarcane, and sandalwood, causing a wide variety of symptoms that range from mild yellowing to death of infected plants. They are most prevalent in tropical and subtropical regions of the world. They require a vector to be transmitted from plant to plant, and this normally takes the form of sap-sucking insects such as leaf hoppers, in which they are also able to survive and replicate.
References to diseases now known to be caused by phytoplasmas occurred as far back as 1603 for mulberry dwarf disease in Japan. Such diseases were originally thought to be caused by viruses, which, like phytoplasmas, require insect vectors, cannot be cultured, and have some symptom similarity. In 1967, phytoplasmas were discovered in ultrathin sections of plant phloem tissue and named mycoplasma-like organisms (MLOs), because they physically resembled mycoplasmas The organisms were renamed phytoplasmas in 1994, at the 10th Congress of The International Organization for Mycoplasmology.
Being Mollicutes, a phytoplasma lacks a cell wall and instead is bound by a triple-layered membrane. The cell membranes of all phytoplasmas studied so far usually contain a single immunodominant protein (of unknown function) that makes up the majority of the protein content of the cell membrane. The typical phytoplasma exhibits a pleiomorphic or filamentous shape and is less than 1 μm in diameter. As prokaryotes, phytoplasmas' DNA is found throughout the cytoplasm, rather than being concentrated in a nucleus.
A common symptom caused by phytoplasma infection is phyllody, the production of leaf-like structures in place of flowers. Evidence suggests the phytoplasma downregulates a gene involved in petal formation (AP3 and its orthologues) and genes involved in the maintenance of the apical meristem (Wus and CLV1). Other symptoms, such as the yellowing of leaves, are thought to be caused by the phytoplasma's presence in the phloem, affecting its function and changing the transport of carbohydrates.
Phytoplasma-infected plants may also suffer from virescence, the development of green flowers due to the loss of pigment in the petal cells. Phytoplasma-harboring plants which are able to flower may nevertheless be sterile. A phytoplasma effector protein (SAP54) has been identified as inducing symptoms of virescence and phyllody when expressed in plants.
Many plants infected by phytoplasmas gain a bushy or "witches' broom" appearance due to changes in their normal growth patterns. Most plants show apical dominance, but phytoplasma infection can cause the proliferation of auxiliary (side) shoots and an increase in size of the internodes. Such symptoms are actually useful in the commercial production of poinsettias. The infection produces more axillary shoots, which enables production of poinsettia plants that have more than one flower.
Phytoplasmas may cause many other symptoms that are induced because of the stress placed on the plant by infection rather than specific pathogenicity of the phytoplasma. Photosynthesis, especially photosystem II, is inhibited in many phytoplasma-infected plants. Phytoplasma-infected plants often show yellowing which is caused by the breakdown of chlorophyll, the biosynthesis of which is also inhibited.
Effector (virulence) proteins
Many plant pathogens produce virulence factors (or effectors) that modulate or interfere with normal host processes in a way that is beneficial to the pathogen.  TCP transcription factors normally regulate plant development and control the expression of lipoxygenase (LOX) genes that are required for the biosynthesis of jasmonate. In infected Arabidopsis plants (and plants that express SAP11 transgenically), jasmonate levels are decreased. The downregulation of jasmonate production is beneficial to the phytoplasma because jasmonate is involved in plant defence against herbivorous insects such as leafhoppers, and leafhoppers have been shown to lay more eggs on AY-WB-infected plants at least in part because of SAP11. For example, the leafhopper Macrosteles quadrilineatus lays 30% more eggs on plants that express SAP11 transgenically, and 60% more eggs on plants infected with AY-WB. Phytoplasmas cannot survive in the external environment and are dependent upon insects such as leafhoppers for transmission to new (healthy) plants. Thus, by interfering with jasmonate production, SAP11 'encourages' leafhoppers to lay more eggs on phytoplasma-infected plants, thereby ensuring that newly hatching leafhopper nymphs feed upon infected plants and become vectors for the bacteria.
Movement between plants
Phytoplasmas are mainly spread by insects of the families Cicadellidea (leafhoppers), Fulgoridea (planthoppers), and Psyllidae (jumping plant lice) , which feed on the phloem tissues of infected plants, picking up the phytoplasmas and transmitting them to the next plant on which they feed. So, the host range of phytoplasmas is strongly dependent upon its insect vector. Phytoplasmas contain a major antigenic protein that makes up the majority of their cell surface proteins. This protein has been shown to interact with insect microfilament complexes and is believed to be the determining factor in insect-phytoplasma interaction. Phytoplasmas may overwinter in insect vectors or perennial plants. Phytoplasmas can have varying effects on their insect hosts; examples of both reduced and increased fitness have been seen.
Phytoplasmas enter the insect's body through the stylet, move through the intestine, and are then absorbed into the haemolymph. From there they proceed to colonise the salivary glands, a process that can take up to three weeks. Once established, phytoplasmas are found in most major organs of an infected insect host. The time between being taken up by the insect and reaching an infectious titre in the salivary glands is called the latency period.
Movement within plants
Phytoplasmas are able to move within the phloem from source to sink, and they are able to pass through sieve tube elements. But since they spread more slowly than solutes, for this and other reasons, movement by passive translocation is not supported.
Detection and diagnosis
Before molecular techniques were developed, the diagnosis of phytoplasma diseases was difficult because they could not be cultured. Thus, classical diagnostic techniques, such as observation of symptoms, were used. Ultrathin sections of the phloem tissue from suspected phytoplasma-infected plants would also be examined for their presence. Treating infected plants with antibiotics such as tetracycline to see if this cured the plant was another diagnostic technique employed.
Molecular diagnostic techniques for the detection of phytoplasma began to emerge in the 1980s and included ELISA-based methods. In the early 1990s, polymerase chain reaction-based methods were developed that were far more sensitive than those that used ELISA, and RFLP analysis allowed the accurate identification of different strains and species of phytoplasma.
More recently, techniques have been developed that allow for assessment of the level of infection. Both quantitative PCR and bioimaging have been shown to be effective methods of quantifying the titre of phytoplasmas within the plant.
Phytoplasmas are normally controlled by the breeding and planting of disease resistant varieties of crops (believed to the most economically viable option) and by the control of the insect vector.
Tissue culture can be used to produce clones of phytoplasma-infected plants that are healthy. The chances of gaining healthy plants in this manner can be enhanced by the use of cryotherapy, freezing the plant samples in liquid nitrogen, before using them for tissue culture.
Tetracyclines are bacteriostatic to phytoplasmas. However, without continuous use of the antibiotic, disease symptoms reappear. Thus, tetracycline is not a viable control agent in agriculture, but it is used to protect ornamental coconut trees.
The genomes of three phytoplasmas have been sequenced: aster yellows witches broom, onion yellows (Ca. Phytoplasma asteris) and Ca. Phytoplasma australiense Phytoplasmas have very small genomes, which also have extremely low levels of the nucleotides G and C, sometimes as little as 23%, which is thought to be the threshold for a viable genome. In fact Bermuda grass white leaf phytoplasma has a genome size of just 530 kb, one of the smallest known genomes of living organisms. Larger phytoplasma genomes are around 1350 kb. The small genome size associated with phytoplasmas is due to their being the product of reductive evolution from Bacillus/Clostridium ancestors. They have lost 75% or more of their original genes, so can no longer survive outside of insects or plant phloem. Some phytoplasmas contain extrachromosomal DNA such as plasmids.
Despite their very small genomes, many predicted genes are present in multiple copies. Phytoplasmas lack many genes for standard metabolic functions and have no functioning homologous recombination pathways, but do have a sec transport pathway. Many phytoplasmas contain two rRNA operons. Unlike the rest of the Mollicutes, the triplet code of UGA is used as a stop codon in phytoplasmas.
Phytoplasma genomes contain large numbers of transposon genes and insertion sequences. They also contain a unique family of repetitive extragenic palindromes called PhREPS whose role is unknown though it is theorised that the stem loop structures the PhREPS are capable of forming may play a role in transcription termination or genome stability.
Phytoplasmas belong to the monophyletic order Acholeplasmatales. In 1992, the Subcommittee on the Taxonomy of Mollicutes proposed the use of the name Phytoplasma in place of the use of the term MLO (mycoplasma-like organism) "for reference to the phytopathogenic mollicutes". In 2004, the genus name Phytoplasma was adopted and is currently at Candidatus status which is used for bacteria that cannot be cultured. Its taxonomy is complicated because it can not be cultured, thus methods normally used for classification of prokaryotes are not possible. Phytoplasma taxonomic groups are based on differences in the fragment sizes produced by the restriction digest of the 16S rRNA gene sequence (RFLP) or by comparison of DNA sequences from the 16s/23s spacer regions. There is some disagreement over how many taxonomic groups the phytoplasmas fall into, recent work involving computer simulated restriction digests of the 16Sr gene suggest there may be up to 28 groups whereas other papers argue for less groups, but more subgroups. Each group includes at least one Ca. Phytoplasma species, characterised by distinctive biological, phytopathological, and genetic properties.
- List of Ca. Phytoplasma species, major groups and subgroups published with their common name and GenBank accession number of 16S rRNA gene sequence
- Note: The Ca. Phytoplasma species names given in square brackets are provisional (16S rRNA sequences similarity <97.5%) and not yet published separately as new species. ‘Undetermined’ denotes Ca. Phytoplasma species’ group or subgroup status pending. 'Not assigned’ denotes Ca. Phytoplasma species status pending (16S rRNA sequences similarity >97.5%) as symptoms shown by the host plant/ insect were significantly different when infected with described strain of phytoplasma as compared to strain of same species or group.
|Sr. no.||Common name||Phytoplasma species||Group/subgroup||Acc. no.||Reference|
|1||Nigerian awka disease||[Ca. P. cocosnigeriae]||16SrXXII-A||Y14175||Firraro, 2004|
|2||Tanzanian lethal disease||[Ca. P. cocostanzaniae]||Undetermined||X80117||Firraro, 2004|
|3||Loofah witches' broom||[Ca. P. luffae]||16SrVIII-A||AF086621||Firraro, 2004|
|4||Palm lethal yellowing||[Ca. P. palmae]||16SrIV-A||U18747||Firraro, 2004|
|5||Western X-disease||[Ca. P. pruni]||16SrIII-A||L04682||Firraro, 2004|
|6||Stolbur phytoplasma||[Ca. P. solani]||16SrXII-A||AF248959||Firraro, 2004|
|7||Flavescence doree||[Ca. P. vitis]||16SrV-C||AF176319||Firraro, 2004|
|8||Papaya yellow crinkle||Ca. P. aurantifolia||16SrII-D||Y10097||Davis et al., 1997|
|9||Allocasuarina yellows||Ca. P. allocasuarinae||Undetermined||AY135523||Marcone et al., 2004|
|10||Potato purple top wilt||Ca. P. americanum||16SrXVIII||DQ174122||Lee et al., 2006|
|11||Lime witches' broom||Ca. P. aurantifolia||16SrII-B||U15442||Zriek et al., 1995|
|12||Grapevine yellows||Ca. P. australience||16SrXII||L76865||Davis et al., 1997|
|13||Balanites witches' broom||Ca. P. balanitae||16SrV||AB689678||Win et al., 2012|
|14||Hibiscus witches' broom||Ca. P. brasiliense||16SrXV||AF147708||Montano et al., 2001|
|15||Papaya bunchy top||Ca. P. caricae||16SrXVII||AY725234||Arocha et al., 2005|
|16||Chestnut witches' broom||Ca. P. castaneae||16SrXIX||AB054986||Jung et al., 2002|
|17||Bindweed yellows||"Ca. P. convolvuli"||16SrXII||JN833705||Martini et al., 2012|
|18||Soybean stunt||Ca. P. costaricanum||16SXXXI||HQ225630||Lee et al., 2011|
|19||Sugarcane white leaf||Ca. P. cynodontis||16SrXI||AB052874||Jung et al., 2003|
|20||Areca palm yellow leaf||Ca. P. cynodontis||16SrXI-A||JN967909||Ramaswamy et al., 2012|
|21||Sugarcane white leaf||Ca. P. cynodontis||16SrXI-C||X76432||Lee et al., 1998|
|22||Leafhopper bourne BVK||Ca. P. cynodontis||16SrXIV||X76429||Semuller et al., 2004|
|23||Bermuda grass white leaf||Ca. P. cynodontis||16SrXIV||AJ550985||Marcone et al., 2004|
|24||Cynodon white leaf||Ca. P. cynodontis||Undetermined||AF509321||Blanche et al., 2003|
|25||Sorghum grassy shoot||Ca. P. cynodontis||Undetermined||AF509324||Blanche et al., 2003|
|26||Sorghum grassy shoot||Ca. P. cynodontis||Undetermined||AF509325||Blanche et al., 2003|
|27||Strawberry witches' broom yellows||Ca. P. fragariae||16SrXII-E||DQ086423||Valiunas et al., 2006|
|28||Ash yellows||Ca. P. fraxini||16SrVII-A||AF092209||Griffiths et al., 1999|
|29||Sugarcane Yellow Leaf||"Ca. P. graminis"||16SrXVI||AY725228||Arocha et al., 2005|
|30||Hydrangea phyllody||Ca. P. japonicum||16SrXII-D||AB010425||Sawayanagi et al., 1999|
|31||Parsley leaf of tomato||Ca. P. lycopersici"||Undetermined||EF199549||Arocha et al., 2007|
|32||Periwinkle phyllody||Ca. P. malasianum||16SrXXXII||EU371934||Nejat et al., 2012|
|33||Apple proliferation||Ca. P. mali||16SrX-A||AJ542541||Semuller et al., 2004|
|34||Cassia italica witches' broom||Ca. P. omanense||16SrXXIX||EF666051||Saddy et al., 2008|
|35||Rice yellow dwarf||Ca. P. oryzae||16SrXI-A||D12581||Namba et al., 2009|
|36||Rice yellow dwarf||Ca. P. oryzae||16SrXI-A||AB052873||Jung et al., 2003|
|37||Almond lethal disease||Ca. P. phoenicium||16SrIX-D||AF515636||Verdin et al., 2003|
|38||Pine shoot proliferation||Ca. P. pini||16SrXXI||AJ632155||Schneider et al., 2005|
|39||Prunus X-disease||Ca. P. pruni||16SrIII-A||JQ044393||Davis et al., 2012|
|40||European stone fruit||Ca. P. prunorum||16SrX-F||AJ542544||Semuller et al., 2004|
|41||Pear decline||Ca. P. pyri||16SrX-C||AJ542543||Semuller et al., 2004|
|42||Buckthorn witches' broom||Ca. P. rhamni||16SrXX||X76431||Marcone et al., 2004|
|43||Rubus stunt||Ca. P. rubi||16SrV||AY197648||Maher et al., 2011|
|44||Bois nor||Ca. P. solani||16SrXII||JQ730746||Quaglino et al., 2013|
|45||Spartium witches' broom||Ca. P. spartii||16SrX-D||X92869||Marcone et al., 2004|
|46||Passiflora witches' broom||Ca. P. sudamericanum||16SrIII-V||GU292082||Davis et al., 2012|
|47||Passiflora witches' broom||Ca. P. sudamericanum||16SrVI||GU292081||Davis et al., 2012|
|48||Salt cedar witches' broom||Ca. P. tamaricis||16SrXXX||FJ432664||Zhao et al., 2009|
|49||Clover proliferation||Ca. P. trifolii||16SrVI-A||AY390261||Hiruki et al., 2004|
|50||Elm yellows||Ca. P. ulmi||16SrV-A||AY197655||Lee et al., 2004|
|51||Jujube witches' broom||Ca. P. ziziphi||16SrV-B||AB052876||Jung et al., 2003|
|52||Aster yellows||Ca. P. asteris||16SrI||M30790||Lee et al., 2004|
|53||MexiCan periwinkle virescence||Not assigned||16SrXIII-A||AF248960||Wei et al. 2007|
|54||Bermuda grass white leaf||Not assigned||16SrXIV||AJ550984||Marcone et al., 2004|
|55||Grapevine yellow||Not assigned||16SrXXIII-A||AY083605||Wei et al., 2007|
|56||Sorghum bunchy shoot||Not assigned||16SrXXIV-A||AF509322||Wei et al., 2007|
|57||Weeping tea witches' broom||Not assigned||16SrXXV-A||AF521672||Wei et al., 2007|
|58||Sugarcane yellows||Not assigned||16SrXXVI-A||AJ539179||Wei et al., 2007|
|59||Sugarcane yellows||Not assigned||16SrXXVII-A||AJ539180||Wei et al., 2007|
|60||Derbid phytoplasma||Not assigned||16SrXXVIII-A||AY744945||Wei et al., 2007|
|61||Chinaberry yellows||Not assigned||Undetermined||AF495882||Wei et al., 2007|
A grape vine with "flavescence dorée" phytoplasma disease
Coconut palms dying of lethal yellowing disease
Trees dying of ash yellows phytoplasma
Symptoms of sweet potato little leaf phytoplasma on Catharanthus roseus
Phyllody of goldenrod
Sugarcane grassy shoot disease 
A cabbage tree killed by Phytoplasma australiense
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- First International Phytoplasmologist Working Group Meeting published in Vol. 60-2 2007 of Bulletin of Insectology
- Photo gallery about plants infected of phytoplasma
- Phytoplasma Resource and phytoplasma classification database
- Ohio State University publishes an informative site on this topic.
- First Internet Conference of Phytopathogenic Mollicutes includes several interesting articles on this topic.
- Phytoplasma Genome Projects.
- The Centre for Information on Coconut Lethal Yellowing (CICLY) with an associated Yahoo discussion group.
- Video of Melia yellows symptoms
- Video of maize bushy stunt symptoms
- Current research on Phytoplasmas at the Norwich Research Park