Portal:Viruses

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The Viruses Portal

The capsid of SV40, an icosahedral virus

Viruses are small infectious agents that can replicate only inside the living cells of an organism. Viruses infect all forms of life, including animals, plants, fungi, bacteria and archaea. They are found in almost every ecosystem on Earth and are the most abundant type of biological entity, with millions of different types, although only about 5,000 viruses have been described in detail. Some viruses cause disease in humans, and others are responsible for economically important diseases of livestock and crops.

Virus particles (known as virions) consist of genetic material, which can be either DNA or RNA, wrapped in a protein coat called the capsid; some viruses also have an outer lipid envelope. The capsid can take simple helical or icosahedral forms, or more complex structures. The average virus is about 1/100 the size of the average bacterium, and most are too small to be seen directly with an optical microscope.

The origins of viruses are unclear: some may have evolved from plasmids, others from bacteria. Viruses are sometimes considered to be a life form, because they carry genetic material, reproduce and evolve through natural selection. However they lack key characteristics (such as cell structure) that are generally considered necessary to count as life. Because they possess some but not all such qualities, viruses have been described as "organisms at the edge of life".

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Hand washing is a protective measure against gastroenteritis

Gastroenteritis is an infectious disease of the gastrointestinal tract involving both the stomach and small intestine, which results in diarrhoea and vomiting, and sometimes abdominal pain. It can be caused by several types of virus: most commonly rotavirus and norovirus, but also adenovirus and astrovirus. Other major causes include Campylobacter, Escherichia coli, Vibrio cholerae and some other bacteria, as well as parasites. Viruses, particularly rotavirus, cause about 70% of gastroenteritis episodes in children, while norovirus is the leading cause of gastroenteritis among adults in America, causing over 90% of outbreaks.

Transmission can be from consumption of improperly prepared foods or contaminated water, or by close contact with infectious individuals. Good sanitation practices and a convenient supply of uncontaminated water are important for reducing infection. Personal measures such as hand washing can decrease incidence by as much as 30%. An estimated 3–5 billion cases of gastroenteritis occur globally each year, mainly among children and people in developing countries, resulting in 1.4 million deaths. Gastroenteritis is usually an acute and self-limiting disease that does not require medication; the main treatment is rehydration using oral rehydration therapy. A rotavirus vaccine is available.

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False-coloured transmission electron micrograph of Ebola virus

Ebola virus is a filamentous RNA virus first recognised in 1976. Four of the five known members of the Ebolavirus genus cause a severe haemorrhagic fever in humans.

Credit: Cynthia Goldsmith

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Martinus Beijerinck in his laboratory in 1921

Although vaccines protecting against viral infections were pioneered in the late 18th century, the history of virology is usually considered to begin over a century later. The first evidence for the existence of viruses came from experiments using filters with pores small enough to retain bacteria. Dmitry Ivanovsky showed in 1892 that sap from a diseased tobacco plant remained infectious despite having been filtered; this agent, later known as tobacco mosaic virus, was the first virus to be demonstrated. In 1898, Friedrich Loeffler and Paul Frosch showed that foot-and-mouth, an animal disease, was caused by a filterable agent. That year, Martinus Beijerinck (pictured) called the filtered infectious substance a "virus" – often considered to mark the beginning of virology, the scientific study of viruses and the infections they cause.

In 1926, Thomas Milton Rivers defined viruses as obligate parasites. Viruses were demonstrated to be particles, rather than a fluid, by Wendell Meredith Stanley in the 1930s.

In the news

Electron micrograph of Zaire ebolavirus

24 March: A small study of a multivalent norovirus virus-like particle vaccine shows a broad antibody response is generated, which covers novel virus variants. PLOS Med

24 March: An Ebola vaccine (virus pictured) based on the 2014 strain is shown to be safe and to generate an immune response in a phase I clinical trial in China. Lancet

23 March: A novel virus, ANMV-1, believed to infect anaerobic archaea in a deep-sea methane seep, is shown to have the first diversity-generating retroelement found in archaea or their viruses, which has the potential to generate rapid genetic diversity in the virus. Nat Comm

22 March: The lowest weekly total of new cases of Ebola virus disease in 2015 has been recorded in the ongoing West African outbreak; since the outbreak began, there have been nearly 25,000 suspected cases and 10,326 deaths. WHO

18 March: A test to distinguish viral from bacterial infections is developed, based on TRAIL (pictured) and other host proteins induced after infection. PLOS ONE

10 March: In the ongoing outbreak of Middle East respiratory syndrome coronavirus (MERS-CoV; pictured), cases continue to be reported in Saudi Arabia; since the outbreak started in September 2012, there have been 1075 cases with at least 404 deaths. WHO

Ribbon diagram of TRAIL

9 March: Real-time imaging of SIV in macaques using immuno-PET reveals unexpectedly high levels of virus in the nasal cavity, lung and male genital tract in antiretroviral-treated animals. Nat Meth

4 March: The International Committee on Taxonomy of Viruses formally ratify their 2014 species list, with one new family of double-stranded DNA bacteriophages, Sphaerolipoviridae, one new subfamily of Myoviridae, Eucampyvirinae, fifty new genera and 359 new species recognised. ICTV

3 March: Four RNA viruses found in farmed honeybees – acute bee paralysis, black queen cell, deformed wing and slow bee paralysis viruses – are widespread among wild bumblebee species in a survey across Britain. J Anim Ecol

2 March: A 3D image of Acanthamoeba polyphaga mimivirus at 125 nm resolution is constructed from multiple high-energy X-ray diffraction patterns of single virions, rather than crystals, in the first application of this technique to a virus. Nature

25 February: H7N9 avian influenza infection continues in China, with 59 cases reported since 21 January. WHO

25 February: WHO calls for increased measles vaccination coverage in the light of outbreaks across Europe; the ongoing outbreak in North America continues. WHO,CDC

Graphic of Middle East respiratory syndrome coronavirus

24 February: A clinical trial in England shows that pre-exposure prophylaxis with tenofovir/emtricitabine (Truvada) reduces the risk of HIV infection by 86% in gay men engaging in high-risk sex. CROI

18 February: Varicella zoster virus antigens are found in 74% of giant cell arteritis biopsies but only 8% of normal ones, suggesting the virus might have a role in triggering disease. Neurology

29 January: A total of 112 novel negative-sense RNA viruses of arthropods, including a putative new family of circular RNA viruses, are identified in a study of 70 arthropod species in China. e-Life

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Viruses & Subviral agents: elephant endotheliotropic herpesvirus • HIV • introduction to virusesFeatured article • Playa de Oro virus • poliovirus • prion • rotavirusFeatured article • virusesFeatured article

Diseases: colony collapse disorder • common cold • dengue feverFeatured article • gastroenteritis • hepatitis B • hepatitis C • herpes simplex • herpes zoster • HIV/AIDS • influenzaFeatured article • meningitisFeatured article • poliomyelitisFeatured article • smallpox

Epidemiology & Interventions: 1918 flu pandemic • 2007 Bernard Matthews H5N1 outbreak • 2009 flu pandemic • polio vaccine

Host response: antibody • immune systemFeatured article • RNA interferenceFeatured article

Social & Media: And the Band Played On • Contagion • "Flu Season" • Frank's CockFeatured article • Race Against TimeFeatured article • social history of virusesFeatured article • "Steve Burdick" • "The Time Is Now"

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Selected virus

X-ray crystallographic structure of the bovine papillomavirus capsid

Papillomaviruses are small non-enveloped DNA viruses that make up the Papillomaviridae family. Their circular double-stranded genome is around 8 kb. The icosahedral capsid is 55–60 nm in diameter. They infect humans, other mammals and some other vertebrates including birds, snakes and turtles. More than a hundred species are known, classified into 30 genera. All papillomaviruses replicate exclusively in epithelial cells of stratified squamous epithelium, which forms the skin and some mucosal surfaces, including the lining of the mouth, airways, genitals and anus.

Infection by most papillomaviruses is either asymptomatic or causes small benign tumours known as warts or papillomas. Francis Peyton Rous showed in 1935 that the cottontail rabbit papilloma virus could cause skin cancer in rabbits – the first time that a virus was shown to cause cancer in mammals – and papillomas caused by some virus types, including human papillomavirus 16 and 18, carry a risk of becoming cancerous if the infection persists. Papillomaviruses are associated with cancers of the cervix, vulva, vagina, penis, oropharynx and anus in humans.

Did you know?

Rice rat (top) with the Panamanian climbing rat

Selected biography

Françoise Barré-Sinoussi in 2008

Françoise Barré-Sinoussi (born 30 July 1947) is a French virologist, known for being one of the researchers who discovered HIV.

Barré-Sinoussi researched retroviruses in Luc Montagnier's group at the Institut Pasteur in Paris. In 1982, she and her co-workers started to analyse samples from people with a new disease, then referred to as "gay-related immune deficiency". They found a novel retrovirus in lymph node tissue, which they called "lymphadenopathy-associated virus". Their results were published simultaneously with those of Robert Gallo's group in the USA, who had independently discovered the virus under the name "human T-lymphotropic virus type III". The virus, renamed "human immunodeficiency virus", was later shown to cause AIDS. Barré-Sinoussi has continued to research HIV, studying how the virus is transmitted from mother to child, the immune response to HIV, and how a small proportion of infected individuals, termed "long-term nonprogressors", can limit HIV replication without treatment. In 2008, she was awarded the Nobel Prize, with Montagnier, for the discovery of HIV.

Selected intervention

Ball-and-stick model of zidovudine

Zidovudine (ZDV) (also known as AZT and Retrovir) is an antiretroviral drug used in the treatment of HIV/AIDS. Classed as a nucleoside analogue reverse-transcriptase inhibitor, it inhibits HIV's reverse transcriptase enzyme, which copies the viral RNA into DNA and is essential for its replication. The first breakthrough in AIDS therapy, ZDV was licensed in 1987. While it significantly reduces HIV replication, leading to clinical and immunological benefits, when used alone ZDV does not completely stop replication, allowing the virus to become resistant to it. The drug is therefore used together with other anti-HIV drugs in combination therapy called highly active antiretroviral therapy (HAART). To simplify its administration, ZDV is included in Combivir, Trizivir and other combination pills. ZDV can also be used to prevent HIV transmission, such as from mother to child during childbirth or after a needlestick injury.

In this month

Diagram of the human rhinovirus capsid

1 September 1910: Peyton Rous shows that a sarcoma of chickens, subsequently associated with Rous sarcoma virus, is transmissible

3 September 1917: Discovery of bacteriophage of Shigella by Félix d'Herelle

8 September 1976: Death of Mabalo Lokela, the first known case of Ebola virus

11 September 1978: Janet Parker was the last person to die of smallpox

12 September 1957: Interferon discovered by Alick Isaacs and Jean Lindenmann

12 September 1985: Structure of human rhinovirus 14 (pictured) solved by Michael Rossmann and colleagues, the first atomic-level structure of an animal virus

26 September 1997: Combivir (zidovudine/lamivudine) approved; first combination antiretroviral

27 September 1985: Structure of poliovirus solved by Jim Hogle and colleagues

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