Simian immunodeficiency virus

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Simian immunodeficiency virus
Virus classification
Group: Group VI (ssRNA-RT)
Order: Unassigned
Family: Retroviridae
Subfamily: Orthoretrovirinae
Genus: Lentivirus
Species: Simian immunodeficiency virus

Simian immunodeficiency viruses (SIVs) are retroviruses that cause persistent infections in at least 45 species of African non-human primates.[1][2] Based on analysis of strains found in four species of monkeys from Bioko Island, which was isolated from the mainland by rising sea levels about 11,000 years ago, it has been concluded that SIV has been present in monkeys and apes for at least 32,000 years, and probably much longer.[3][4]

Virus strains from two of these primate species, SIVsmm in sooty mangabeys and SIVcpz in chimpanzees, are believed to have crossed the species barrier into humans, resulting in HIV-2 and HIV-1, respectively. The most likely route of transmission of HIV-1 to humans involves contact with the blood of chimps that are often hunted for bushmeat in Africa.[3]

Unlike HIV-1 and HIV-2 infections in humans, SIV infections in their natural hosts appear in many cases to be non-pathogenic. Extensive studies in sooty mangabeys have established that SIVsmm infection does not cause any disease in these animals, despite high levels of circulating virus. However, if this virus infects an Asian or Indian rhesus macaque, the animal will develop simian AIDS (SAIDS).[5] A recent study of SIVcpz in wild living chimpanzees suggests that infected chimpanzees experience an AIDS-like illness similar to HIV-1 infected humans. The later stages of SIV infection turn into SAIDS, much as HIV infection turns into AIDS.

Taxonomy[edit]

The ICTVdB code of SIV is 61.0.6.5.003.[6]

The simian (monkey-hosted) immunodeficiency viruses are a species of retrovirus in the Primate group of genus Lentivirus along with the human viruses HIV-1 and HIV-2 that cause AIDS, and a few other viruses that infect other primates. Related viruses in other groups in the genus infect other mammals like sheep and goats, horses, cattle, cats and a few others. The genus is one of 6 genera in subfamily orthoretrovirinae which together with genus Spumavirus form family retroviridae of all RNA retroviruses (RNA viruses which use a DNA intermediate). The order to which family retroviridae belongs is not specified. The taxonomic relationship between RNA retroviruses and other RNA viruses and DNA viruses has not been specified. SIV retroviruses are in group vi (positive-sense single-stranded retroviruses) of the Baltimore classification system.

Strains[edit]

While human immunodeficiency virus has a limited number of subtypes, SIV is now known to infect a few dozen species of non-human primates, and distinct strains are often associated with each species, or with a set of closely related species. The thus far categorized ~40 strains are divided into 5 distinct groups and one subgroup:




 grp i 
 
 
 
 

HIV-1


 

cpzPtt



 

gor



 

cpzPts



 
 
 

drl


 

mnd2



 
 

rcm


 

agi





 grp ii 
 
 
 

HIV-2


 

mac



 

mne


 

stm



 

smm




 grp iii/agm 
 
 
 

gri


 

ver



 

tan



 

sab



 grp iv 

 
 
 

lho


 

sun



 

prg



 

mnd1



 
 
 

wrc


 

olc



 
 

trc


 

krc






 grp v 
 
 
 
 
 
 

gsn


 

mus2


 (grp vi) 
 
 
 

col


 

kcol1



 

kcol2




blc





 

mon


 

mus1




reg



 
 

tal


 
 

asc


 

bkm





 
 

deb



blu


 
 
 

den


 

syk



 

wol






Phylogenetic relations between simian immunodeficiency viruses (SIVs)[7][8][9][10][11]

History[edit]

Immunodeficiency resembling human AIDS was reported in captive monkeys in the United States beginning in 1983.[12][13][14] SIV was isolated in 1985 from some of these animals, captive rhesus macaques suffering from simian AIDS (SAIDS).[13] The discovery of SIV was made shortly after HIV-1 had been isolated as the cause of AIDS and led to the discovery of HIV-2 strains in West Africa. HIV-2 was more similar to the then-known SIV strains than to HIV-1, suggesting for the first time the simian origin of HIV. Further studies indicated that HIV-2 is derived from the SIVsmm strain found in sooty mangabeys, whereas HIV-1, the predominant virus found in humans, is derived from SIV strains infecting chimpanzees (SIVcpz).[citation needed]

Chimpanzees are not believed to be the original hosts of an independent lineage of SIV, but rather that SIVcpz is a relatively recent acquisition resulting from a recombination of SIVgsn (greater spot-nosed monkeys) and SIVrcm (red-capped mangabeys) within the host chimpanzee. It is known that chimpanzees hunt and consume these monkeys for food.[15]

In 2010, researchers reported that SIV had infected monkeys in Bioko for at least 32,000 years. Based on molecular clock analyses of sequences, it was previously thought by many that SIV infection in monkeys had happened over the past few hundred years.[16][unreliable source?] Scientists estimated that it would take a similar amount of time before humans would adapt naturally to HIV infection in the way monkeys in Africa have adapted to SIV and not suffer any harm from the infection.[17][unreliable source?]

In 2008, discovery of an endogenous lentivirus in a prosimian (proto-monkey) primate, the gray mouse lemur native to Madagascar, pushed the origin of SIV-like lentivirus infections in primates back to at least 14 Ma, the last time there was intermingling of mammals between the island of Madagascar and the African mainland, if the infection is attributed to horizontal transmission between homologous hosts. If the virus and host were coevolved, rather than acquired, that potentially pushes the date of the endogenous event back to approx. 85 Ma, the split between the lemur-like and monkey-like primate lineages. That date barely antedates the emergence of the primates 87.7 Ma.

Virology[edit]

Structure and Genome[edit]

The SIV virion is a spherical to pleomorphic glycoprotein envelope 110-120nm enclosing a 110x50nm truncated cone or wedge-shaped (occasionally rod) capsid containing a dimeric pair of positive-sense single-stranded RNA genome.

Genome[edit]

  • coding regions

Proteome[edit]

  • genes: env, gag, pol, tat, rev, nef, vpr, vif, vpu/vpx
  • Structural proteins
  (envelope): SU, TM,(gag): MA, CA, NC
  • Enzymes
  RT, PR, IN 
  • Gene regulators
  Tat, Rev
  • Accessory proteins
  Nef, Vpr, Vpx, Vif

Tropism[edit]

Differences in species specificity of SIV and related retroviruses may be partly explained by variants of the protein TRIM5α in humans and non-human primate species. This intracellular protein recognizes the capsid of various retroviruses and blocks their reproduction. Other proteins such as APOBEC3G/3F that exerts antiretroviral immune activity, may also be important in restricting cross-species transmission.[18]

Replication[edit]

  • Attachment
  • Penetration
  • Uncoating
  • Replication
    • reverse transcription
 +ssRNA → -ssDNA → dsDNA → +ssRNA (viral genone)
                         → +ssmRNA → viral protein
    • integration
    • latency
    • cleavage
    • protein synthesis
    • Assembly
  • Budding
  • Maturation

Quasispecies[edit]

The speed and transcription inaccuracies of RNA viruses give rise to antigenically distinct varieties in a single host animal. These quasispecies don't necessarily give rise to population wide new organisms. The rate of proliferation of quasispecies has significant implication for host immune control, and therefore virulance of the organism.

Pathogenesis[edit]

SIV pathogenesis encompasses both pathogenic and non-pathogenic SIV infections. SIV infection of non-human primates (NHPs) invariably results in persistent infection, but rarely acute disease. Pathogenic infection is typified by Rhesus macaques infected with SIV strains derived from sooty mangabeys. Disease progression to AIDS occurs within a period of months to years, depending upon the SIV strain used. Non-pathogenic infection is typified by African NHPs naturally infected with SIV. These animals rarely progress to AIDS despite maintaining viral loads that are equivalent to SIV viral loads in pathogenic infections. It is postulated that AIDS-like disease in African NHPs represents horizontal transmission of the virus from one or more homologous species in the recent evolutionary past, before equilibrium of co-adaptation has occurred.

Epidemiology[edit]

strain lineage host binomial disease
HIV-1 SIVcpz humans H. sapiens AIDS
HIV-2 SIVsmm humans H. sapiens AIDS
SIVcpz SIVrcm/SIVgsn Chimpanzee P. Troglodytes SAIDS
SIVgor SIVcpz Gorilla G. gorilla ( - )
SIVsmm Sooty mangabey ( - )

Beatrice Hahn of the University of Pennsylvania and a team of researchers in 2009 found that chimpanzees do die from simian AIDS in the wild and that the AIDS outbreak in Africa has contributed to the decline of chimpanzee populations. Testing wild chimpanzees, researchers detected organ and tissue damage similar to late-stage human AIDS. The infected chimpanzees had a 10 to 16 times greater risk of dying than uninfected ones; infected females were less likely to give birth, could pass the virus to their infants, and had a higher infant mortality rate than uninfected females.[19][20] Bonobos appear to avoid simian immunodeficiency virus (SIV) and its effects, though it is not known why.[21]

Vaccine Research[edit]

SHIV, a virus combining parts of the HIV and SIV genomes, was created for various research purposes, including analyzing how different parts of the virus respond to different antimicrobial drugs and vaccines.[22]

In 2012, researchers reported that initial infection of rhesus monkeys by neutralization-resistant SIV strains[23] could be partially prevented through use of an anti-SIVSME543 vaccine obligately including Env protein antigens.[24]

In 2013, a study by a group of authors reported on successful testing of a vaccine containing SIV protein-expressing rhesus cytomegalovirus vector. Approximately 50% of vaccinated rhesus macaques manifested durable, aviraemic control of infection with the highly pathogenic strain SIVmac239.[25]

See also[edit]

Further reading[edit]

References[edit]

  1. ^ Peeters, M.; Courgnaud, V.; Abela, B. (2001). "Genetic Diversity of Lentiviruses in Non-Human Primates" (PDF). AIDS Reviews. 3: 3–10. Retrieved 2010-09-19. 
  2. ^ Peeters, M.; Courgnaud, V. (2002). "Overview of Primate Lentiviruses and their Evolution in Non-human Primates in Africa" (PDF). In C. Kuiken; B. Foley; E. Freed; B. Hahn; B. Korber; P. A. Marx; F. E. McCutchan; J. W. Mellors; S. Wolinsky. HIV sequence compendium. Los Alamos, NM: Theoretical Biology and Biophysics Group, Los Alamos National Laboratory. pp. 2–23. Retrieved 2010-09-19  Missing or empty |title= (help)
  3. ^ a b Donald G. McNeil, Jr. (September 16, 2010). "Precursor to H.I.V. Was in Monkeys for Millennia". New York Times. Retrieved 2010-09-17. In a discovery that sheds new light on the history of AIDS, scientists have found evidence that the ancestor to the virus that causes the disease has been in monkeys and apes for at least 32,000 years — not just a few hundred years, as had been previously thought. ... That means humans have presumably been exposed many times to S.I.V., the simian immunodeficiency virus, because people have been hunting monkeys for millenniums, risking infection every time they butcher one for food. 
  4. ^ Worobey, Michael; Telfer, Paul; Souquière, Sandrine; Hunter, Meredith; Coleman, Clint A.; Metzger, Michael J.; Reed, Patricia; Makuwa, Maria; Hearn, Gail (2010). "Island Biogeography Reveals the Deep History of SIV". Science. 329 (5998): 1487. Bibcode:2010Sci...329.1487W. doi:10.1126/science.1193550. PMID 20847261. .
  5. ^ Kestler, H.; Kodama, T.; Ringler, D.; Marthas, M.; Pedersen, N.; Lackner, A.; Regier, D.; Sehgal, P.; Daniel, M.; King, N.; Et, A. (1990). "Induction of AIDS in rhesus monkeys by molecularly cloned simian immunodeficiency virus". Science. 248 (4959): 1109–1112. doi:10.1126/science.2160735. PMID 2160735. 
  6. ^ ICTV database entry: 61.0.6.5.003
  7. ^ Sharp, et.al, Paul (Sept 2011). "Origins of HIV and the AIDS Epidemic". Cold Spring Harb Perspect Med. 1 (1): a006841. doi:10.1101/cshperspect.a006841. PMC 3234451Freely accessible. PMID 22229120.  Check date values in: |date= (help)
  8. ^ Ahuka-Mundeke, et.al, Steve (Dec 2011). "Novel Multiplexed HIV/Simian Immunodeficiency Virus Antibody Detection Assay". Emerg Infect Dis. 17 (12): 2277–2286. doi:10.3201/eid1712.110783. PMC 3311211Freely accessible. PMID 22172157. 
  9. ^ Pancino, et.al., Gianfranco (2012). Models of Protection Against HIV/SIV: Avoiding AIDS in Humans and Monkeys. Elsevier. p. 6. ISBN 978-0-12-387715-4. 
  10. ^ Peeters et.al, Martine (May 2002). "Risk to Human Health from a Plethora of Simian Immunodeficiency Viruses in Primate Bushmeat". Emerg Infect Dis. 8 (5): 451–7 Fig 2. doi:10.3201/eid0805.01-0522. PMC 2732488Freely accessible. PMID 11996677. 
  11. ^ Lauck, et.al, M (Oct 21, 2013). "Discovery and full genome characterization of two highly divergent simian immunodeficiency viruses infecting black-and-white colobus monkeys (Colobus guereza) in Kibale National Park, Uganda.". Retrovirology. 10: 107. doi:10.1186/1742-4690-10-107. PMC 4016034Freely accessible. PMID 24139306. 
  12. ^ Letvin, N.; Eaton, K.; Aldrich, W.; Sehgal, P.; Blake, B.; Schlossman, S.; King, N.; Hunt, R. (1983). "Acquired immunodeficiency syndrome in a colony of macaque monkeys". Proceedings of the National Academy of Sciences of the United States of America. 80 (9): 2718–2722. Bibcode:1983PNAS...80.2718L. doi:10.1073/pnas.80.9.2718. PMC 393899Freely accessible. PMID 6221343. 
  13. ^ a b Daniel, M. D.; Letvin, N. L.; King, N. W.; Kannagi, M.; Sehgal, P. K.; Hunt, R. D.; Kanki, P. J.; Essex, M.; Desrosiers, R. C. (1985). "Isolation of T-cell tropic HTLV-III-like retrovirus from macaques". Science. 228 (4704): 1201–1204. Bibcode:1985Sci...228.1201D. doi:10.1126/science.3159089. PMID 3159089. 
  14. ^ King, N. W.; Hunt, R. D.; Letvin, N. L. (1983). "Histopathologic changes in macaques with an acquired immunodeficiency syndrome (AIDS)". The American Journal of Pathology. 113 (3): 382–388. PMC 1916356Freely accessible. PMID 6316791. 
  15. ^ Sharp, et.al. (Dec. 2016). "Simian Immunodeficiency Virus Infection of Chimpanzees". Journal of Virology. 90 (24).  Check date values in: |date= (help)
  16. ^ McNeil Jr, Donald (17 September 2010). "Precursor to H.I.V. Was in Monkeys for Millenniums". The New York Times. Retrieved 17 September 2010. 
  17. ^ "HIV precursor in monkeys ancient: study". CBC News. 17 September 2010. Archived from the original on March 25, 2013. Retrieved 17 September 2010. 
  18. ^ Jonathan L. Heeney; Angus G. Dalgleish; Robin A. Weiss (July 2006). "Origins of HIV and the evolution of resistance to AIDS" (PDF). Science. 313 (5786): 462–466. Bibcode:2006Sci...313..462H. doi:10.1126/science.1123016. PMID 16873637. 
  19. ^ Chimpanzees Do Die From Simian AIDS, Study Finds by Lawrence K. Altman Chimpanzees Do Die from Simian AIDS, Study Finds
  20. ^ Keele, BF; Jones, JH; Terio, KA; et al. (2009). "Increased mortality and AIDS-like immunopathology in wild chimpanzees infected with SIVcpz". Nature. 460: 515–519. 
  21. ^ Paul M. Sharp; George M. Shaw; Beatrice H. Hahn (April 2005). "Simian Immunodeficiency Virus Infection of Chimpanzees". Journal of Virology. pp. 3891–3902. 
  22. ^ e., L.; Srinivasan, P.; m., J. (2012). "Simian-Human Immunodeficiency Viruses and Their Impact on Non-Human Primate Models for AIDS". Immunodeficiency. doi:10.5772/53556. ISBN 978-953-51-0791-0. 
  23. ^ "Neutralization-resistant" refers to strains which are not able to be neutralized by the native immune response due to compensating mutation; see HIV-1 related information.
  24. ^ Barouch, Dan H.; et al. (25 additional authors) (4 Jan 2012), "Vaccine protection against acquisition of neutralization-resistant SIV challenges in rhesus monkeys", Nature, 482, advance online publication, Bibcode:2012Natur.482...89B, doi:10.1038/nature10766, retrieved 6 Jan 2012 . Lay summary available from Bloomberg at "J&J AIDS Vaccine Protects Monkeys in Study as Testing in Humans Begins", published 4 Jan 2012.
  25. ^ Hansen, Scott G.; et al. (2013). "Immune clearance of highly pathogenic SIV infection". Nature. 502 (7469): 100–104. doi:10.1038/nature12519. 

External links[edit]