UniCarb-DB
UniCarb-DB[1] is a structural and mass spectrometric database used in glycomics. UniCarb-DB provides over 800 LC-MS/MS spectra for N- and O-linked glycans released from glycoproteins that were manually annotated. Each entry contains reference to published work, information about structure, GlyToucan Accession Number, MS/MS fragmentation with complete peak lists, biological contexts and experimental metadata.[2] The database was created by a collaboration between University of Gothenburg and Macquarie University[3][4] and since November 2016 is hosted by Swiss Institute for Bioinformatics.
References
- ^ "UniCarb-DB". unicarb-db.expasy.org. Retrieved 2016-11-14.
- ^ Lisacek, Frederique; Mariethoz, Julien; Alocci, Davide; Rudd, PaulineM.; Abrahams, JodieL.; Campbell, MatthewP.; Packer, NicolleH.; Ståhle, Jonas; Widmalm, Göran (2017-01-01). Lauc, Gordan; Wuhrer, Manfred (eds.). High-Throughput Glycomics and Glycoproteomics. Methods in Molecular Biology. Springer New York. pp. 235–264. doi:10.1007/978-1-4939-6493-2_18. ISBN 9781493964918.
- ^ Campbell, Matthew P.; Nguyen-Khuong, Terry; Hayes, Catherine A.; Flowers, Sarah A.; Alagesan, Kathirvel; Kolarich, Daniel; Packer, Nicolle H.; Karlsson, Niclas G. (2014-01-01). "Validation of the curation pipeline of UniCarb-DB: building a global glycan reference MS/MS repository". Biochimica Et Biophysica Acta. 1844 (1 Pt A): 108–116. doi:10.1016/j.bbapap.2013.04.018. ISSN 0006-3002. PMID 23624262.
- ^ Hayes, Catherine A.; Karlsson, Niclas G.; Struwe, Weston B.; Lisacek, Frederique; Rudd, Pauline M.; Packer, Nicolle H.; Campbell, Matthew P. (2011-05-01). "UniCarb-DB: a database resource for glycomic discovery". Bioinformatics (Oxford, England). 27 (9): 1343–1344. doi:10.1093/bioinformatics/btr137. ISSN 1367-4811. PMID 21398669.