Variant of Concern 202012/01

From Wikipedia, the free encyclopedia
Jump to navigation Jump to search

Countries with confirmed cases of VOC-202012/01 as of 16 January 2021.
Legend:
  1000+ confirmed cases
  100–999 confirmed cases
  50–99 confirmed cases
  10–49 confirmed cases
  5–9 confirmed cases
  2–4 confirmed cases
  1 confirmed case
  It has cases, but there are no precise figures
  Suspected cases
  No confirmed cases, no population, or no data available

Variant of Concern 202012/01 (also known as lineage B.1.1.7 and UK COVID variant, see nomenclature) is a variant of SARS-CoV-2, the virus that causes COVID-19, one of several causing concern. It is estimated to be 74% more transmissible[1][2][3] and 30% more lethal[4] than the regular COVID-19. It is estimated to have first emerged in September 2020 during the COVID-19 pandemic in the United Kingdom; it was studied in November and it began to spread quickly by mid-December. It is correlated with a significant increase in the rate of COVID-19 infections in the United Kingdom; this increase is thought to be at least partly because of change N501Y (see nomenclature for mutations) inside the spike glycoprotein's receptor-binding domain, which binds ACE2 in human cells. The variant is also notable for having more mutations than the recorded trend to date.[5]

Names[edit]

The variant is known by several names. In government and media reports it may be referred to as UK COVID-19 variant, UK coronavirus variant or simply as the UK variant or British variant.[6]

In scientific use the variant had originally been named the first Variant Under Investigation in December 2020 (VUI – 202012/01) by Public Health England,[7][a] but was reclassified to a Variant of Concern (Variant of Concern 202012/01, abbreviated VOC-202012/01) by Meera Chand and her colleagues in a report published by Public Health England on 21 December 2020.[b] In a report written on behalf of COVID-19 Genomics UK (COG-UK) Consortium, Andrew Rambaut and his co-authors referred to the variant as lineage B.1.1.7,[9] while Nextstrain dubbed the variant 20I/501Y.V1.[10]

Detection[edit]

VOC 202012/01 was first detected in early December 2020 by combining genome data with knowledge that the rates of infection in Kent were not falling despite national restrictions.[5][11]

The two earliest genomes that belong to the B.1.1.7 lineage were collected on 20 September 2020 in Kent and another on 21 September 2020 in Greater London.[9] These sequences were submitted to the GISAID sequence database (sequence accessions EPI_ISL_601443 and EPI_ISL_581117 respectively). As of 15 December, there were 1623 genomes in the B.1.1.7 lineage. Of these 519 were sampled in Greater London, 555 in Kent, 545 in other regions of the UK including both Scotland and Wales, and 4 in other countries.[9]

Backwards tracing using genetic evidence suggests this new variant emerged in September 2020 and then circulated at very low levels in the population until mid-November. The increase in cases linked to the new variant first became apparent in late November when Public Health England (PHE) was investigating why infection rates in Kent were not falling despite national restrictions. PHE then discovered a cluster linked to this variant spreading rapidly into London and Essex.[12]

Although the variant was first detected in Kent, it may never be known where it originated. Discovery in the UK may merely reflect that the UK does more sequencing than many other countries. It has been suggested that the variant may have originated in a chronically infected immunocompromised person, giving the virus a long time to replicate and evolve.[13][5]

Characteristics[edit]

Genetics[edit]

Defining mutations in VOC-202012/01
(change of amino acid only)
Gene Nucleotide Amino acid
ORF1ab C3267T T1001I
C5388A A1708D
T6954C I2230T
11288–11296del SGF 3675–3677del
Spike 21765–21770del HV 69–70del
21991–21993del Y144del
A23063T N501Y
C23271A A570D
C23604A P681H
C23709T T716I
T24506G S982A
G24914C D1118H
ORF8 C27972T Q27stop
G28048T R52I
A28111G Y73C
N 28280 GAT→CTA D3L
C28977T S235F
Source: Chand et al., table 1 (p. 5)

Mutations in SARS-CoV-2 are common: over 4,000 mutations have been detected in the spike glycoprotein alone, according to the COVID-19 Genomics UK (COG-UK) Consortium.[14]

The VOC-202012/01 variant is defined by 23 mutations: 13 non-synonymous mutations, 4 deletions, and 6 synonymous mutations[15] (i.e., there are 17 mutations that change proteins and six that do not[5]).

Transmissibility[edit]

The UK scientific advisory body NERVTAG (New and Emerging Respiratory Virus Threats Advisory Group) concluded on 18 December 2020 that they had moderate confidence that VOC-202012/01 was substantially more transmissible than other variants, but that there were insufficient data to reach any conclusion on underlying mechanism of increased transmissibility (e.g. increased viral load, tissue distribution of virus replication, serial interval etc.), the age distribution of cases, or disease severity.[16] Data seen by NERVTAG indicated that the relative reproduction number ("multiplicative advantage") was determined to be 1.74, that is, that the variant is 74% more transmissible, assuming a 6.5 days generational interval.[1][2][3] The variant will thus out-compete the ancestral variant by a factor of every two weeks. Another group came to similar conclusions, generating a replicative advantage, independent of "protective measures", of 2.24 per generation of 6.73 days, out-competing the ancestral variant by every two weeks.[17] Also in Denmark, the variant grows by a factor of every two weeks.[18] Similiarly, in Ireland, the variant, as indicated by the historically rare missing S gene detection (SGTF), went from 16.3% to 45.7% of cases in two weeks. Indicating a relative growth during that time of (over) .[19] While the relative growth rate of the virus can relatively accurately be measured and is relatively consistent, the resulting multiplicative advantage depends on the presumed generational interval, which appears to vary.[20] The variant became the dominant variant in London, East of England and the South East from low levels in one to two months. A surge of SARS-CoV-2 infections around the start of the new year is seen as being the result of the elevated transmissibility of the variant, while the other variants were in decline.[21][22][23]

The variant has become dominant in the United Kingdom and Ireland.[24] In Portugal, where data reported mid-January indicates 20% of the infections is of the variant for data reported, it appears to become dominant in January.[25] Incomplete surveillance data for the first full week of the year in the Netherlands and Denmark indicate high percentages there as well, at 13.5% (22/163) and 8%, respectively.[26][27] In France, where the variant was at 1.4% on January 8, it is expected to become dominant around week 9.[28] In the U.S., where the variant was at around 0.3% at the start of the year, it is expected to become predominant in March.[29][30] It is presumed the variant will become dominant globally.[31][32] It requires tougher restrictions to avoid fast exponential growth of a virus which is this transmissible, and transmission control of this variant looks increasingly tenuous.[33][34]

One of the most important changes in VOC-202012/01 seems to be N501Y,[14] a change from asparagine (N) to tyrosine (Y) at amino-acid site 501.[35] This is because of its position inside the spike glycoprotein's receptor-binding domain (RBD)—more specifically inside the receptor-binding motif (RBM),[36] a part of the RBD[37]—which binds human ACE2.[38] Mutations in the RBD can change antibody recognition and ACE2 binding specificity[38] and lead to the virus becoming more infectious;[14] indeed, Chand et al. conclude that "[i]t is highly likely that N501Y affects the receptor binding affinity of the spike protein and it is possible that this mutation alone or in combination with the deletion at 69/70 in the N terminal domain (NTD) is enhancing the transmissibility of the virus".[39]

UK Prime Minister Boris Johnson said on 19 December 2020 that the new variant could be up to 70% more transmissible than previous variants, although there was "considerable uncertainty".[40][41] The French government said, two days later, that increased transmissibility had "not been clearly established".[42] Vivek Murthy—who is a former U.S. Surgeon General, current nominee for Surgeon General, and co-chair of the US COVID-19 Advisory Board—agreed that the variant seemed to be more easily transmissible.[43][44]

Misconceptions[edit]

is the reproduction number without immunity and social distancing measures; is the reproduction number at the level of immunity and social distancing at a time (e.g., the current time). It has been reported that the variant has an elevated current , and values for the difference have been estimated. is important for the level of immunity required to start relieving social distancing measures while avoiding exponential growth. The variant also has an elevated but the (likely higher) differences have not been reported.[1][further explanation needed][original research?]

The modelling used by Eric Volz et al[1] and Grabowky et al[17] works with just an enhanced transmissibility factor, the relative reproduction number, as a "multiplicative advantage" of 1.74 to the reproduction number . In their modeling, the relative growth and thus the moment the variant becomes dominant does not depend on social distancing measures or traveling restrictions.

Virulence[edit]

NERVTAG concluded on 18 December 2020 that there were insufficient data to reach a conclusion regarding disease severity. At Johnson's briefing the following day, officials said that there was "no evidence" as of that date that the new variant caused higher mortality, or was affected differently by vaccines and treatments;[40][41] Vivek Murthy agreed with this.[44]

Susan Hopkins, the joint medical adviser for the NHS Test and Trace and Public Health England (PHE), declared in mid-December 2020: "There is currently no evidence that this strain causes more severe illness, although it is being detected in a wide geography, especially where there are increased cases being detected."[14]

On 23 December NERVTAG member Wendy Barclay said in an interview that there was no evidence that "long covid" was related to a variant, saying that it was most probably due to a difference in individuals' host response.[45]

Public Health England's laboratory at Porton Down was running tests to find evidence whether the new variant affects the severity of disease.[46]

Genetic sequencing of VOC-202012/01 has shown a Q27stop mutation which "truncates the ORF8 protein or renders it inactive".[9] An earlier study of SARS-CoV-2 variants which deleted the ORF8 gene noted that they "have been associated to milder symptoms and better disease outcome".[47] The study also noted that "SARS-CoV-2 ORF8 is an immunoglobulin (Ig)–like protein that modulates pathogenesis", "SARS-CoV-2 ORF8 mediates major histocompatibility complex I (MHC-I) degradation", and "SARS-CoV-2 ORF8 suppresses type I interferon (IFN)–mediated antiviral response".[47]

Referring to amino-acid position 501 inside the spike glycoprotein (VOC-202012/01 has a change, N501Y, in this position), Chand et al. concluded that "it is possible that variants at this position affect the efficacy of neutralisation of virus", but noted that "[t]here is currently no neutralisation data on N501Y available from polyclonal sera from natural infection". 69–70del—a deletion of the amino acids in positions 69–70 of the spike glycoprotein—has, however, been discovered "in viruses that eluded the immune response in some immunocompromised patients",[48] and has also been found "in association with other RBD changes".[39]

On 22 January 2021, Johnson said that "there is some evidence that the new variant [...] may be associated with a higher degree of mortality", though Sir Patrick Vallance, the government's Chief Scientific Advisor stressed that there is not yet enough evidence to be fully certain of this.[49] NERVTAG has stated that B117 variant may increase mortality by 30%.[50]

Rapid-antigen-test effectiveness[edit]

Several rapid antigen tests for SARS-CoV-2 are in widespread use globally for COVID-19 diagnostics. They are believed to be useful in stopping the chain of transmission of SARS-CoV-2 by providing the means to rapidly identify large number of cases as part of a mass testing program. Following the emergence of VOC-202012/01, there was initially concern that rapid tests might not detect it, but Public Health England determined that rapid tests evaluated and used in the United Kingdom detect the variant.[51]

Vaccine effectiveness[edit]

As of late 2020, several COVID-19 vaccines were being deployed or under development.

However, as further mutations occur, concerns were raised as to whether vaccine development would need to be altered. SARS-CoV-2 does not mutate as quickly as, for example, influenza viruses, and the new vaccines that had proved effective by the end of 2020 are types that can be adjusted if necessary.[52] As of the end of 2020, German, British, and American health authorities and experts believe that existing vaccines will be as effective against the new VOC-202012/01 variant as against previous variants.[53][54]

On 18 December, NERVTAG determined "that there are currently insufficient data to draw any conclusion on [...] [a]ntigenic escape".[16]

As of 20 December 2020, Public Health England confirmed there is "no evidence" to suggest that the new variant would be resistant to the Pfizer–BioNTech vaccine currently being used in the UK's vaccination programme, and that people should still be protected.[12]

Spread[edit]

Cases in many countries are said to be likely undetected as most tests do not distinguish between this variant and other COVID-19 variants, and many COVID-19 infections are not detected at all. RNA sequencing is required for detection of this variant,[55] although variant-specific PCR testing is becoming available.[56]

The first case was likely in mid-September 2020 in London or Kent, United Kingdom.[57] As of 13 December 2020, 1,108 cases with this variant had been identified in the UK in nearly 60 different local authorities. These cases were predominantly in the south east of England. The variant has also been identified in Wales and Scotland.[46] By November, around a quarter of cases in the COVID-19 pandemic in London were being caused by the new variant, and by December, that was a third.[58] In mid-December, it was estimated that almost 60 percent of cases in London involved VOC-202012/01.[59]

As of 20 December 2020, nine cases of the new variant had been reported in Denmark,[40][60] four in Belgium[61] and one each in the Netherlands, Australia[40][60] and Italy.[62] Shortly after, several other countries confirmed their first cases, the first of whom were found in Iceland and Gibraltar,[63][64] then Singapore, Israel and Northern Ireland on 23 December,[65][66][67] Germany and Switzerland on 24 December,[68][69] and the Republic of Ireland and Japan confirmed on 25 December.[70][71]

The first cases in Canada, France, Lebanon, Spain and Sweden were reported on 26 December.[72][73][74][75] Jordan, Norway, and Portugal reported their first case on 27 December,[76][77] Finland and South Korea reported their first cases on 28 December,[78][79] and Chile, India, Pakistan and the United Arab Emirates reported their first cases on 29 December.[80][81][82][83] The first case of new variant in Malta and Taiwan are reported on 30 December.[84][85] China and Brazil reported their first cases of the new variant on 31 December.[86][87] The United Kingdom and Denmark are sequencing their SARS-CoV-2 cases at considerably higher rates than most others,[88] and it was considered likely that additional countries would detect the variant later.[89]

The United States reported a case in Colorado with no travel history on 29 December, the sample was taken on 24 December.[90] On 6 January 2021, the US Centers for Disease Control and Prevention announced that it had found at least 52 confirmed cases in California, Florida, Colorado, Georgia, and New York.[91] In the following days, more cases of the variant were reported in other states, leading former CDC director Tom Frieden to express his concerns that the U.S. will soon face "close to a worst-case scenario".[92]

Turkey detected its first cases in 15 people from England on 1 January 2021.[93] It was reported on 1 January that Denmark had found a total of 86 cases of the variant, equalling an overall frequency of less than 1% of the sequenced cases in the period from its first detection in the country in mid-November to the end of December;[94][95] this had increased to 1.6% of sequenced tests in the period from mid-November to week two of 2021, with 7% of sequenced tests in this week alone being of the B.1.1.7 lineage.[96] Luxembourg and Vietnam reported their first case of this variant on 2 January 2021.[97][98] On 3 January 2021, Greece and Jamaica detected their first four cases of this variant[99][100] and Cyprus announced that it had detected VOC-202012/01 in 12 samples.[101] At the same time, New Zealand and Thailand reported their first cases of this variant, where the former reported six cases made up of five from the United Kingdom and one from South Africa,[102] and the latter reported the cases from a family of four who had arrived from Kent.[103] Georgia reported its first case[104] and Austria reported their first four cases of this variant, along with one case of 501.V2 variant, on 4 January.[105] On 5 January, Iran,[106] Oman,[107] Slovakia,[108] and the US state of Georgia reported their first case of VOC-202012/01, with the person infected in Georgia having no travel history.[109] On 8 January, Romania reported its first case of the variant, an adult woman from Giurgiu County who declared not having left the country recently.[110] On 9 January, Peru confirmed its first case of the variant.[111] Mexico and Russia reported their first case of this variant on 10 January,[112] then Malaysia and Latvia on 11 January.[113][114] On 12 January, Ecuador confirmed its first case of this variant.[115] The Philippines and Hungary both detected the presence of the variant on 13 January.[116][117] The Gambia recorded first cases of the variant on 14 January with it being the first confirmation of the variant's presence in Africa.[118] On 15 January, Dominican Republic confirmed its first case of the new variant[119] and Argentina confirmed its first case of the variant on 16 January.[120] Czech Republic and Morocco reported their first cases on 18 January[121][122] and Kuwait confirmed its first cases of the variant on 19 January.[123]

In early January, an outbreak linked to a primary school led to the detection of at least 30 cases of the new variant in the Bergschenhoek area of the Netherlands, signifying local transmission.[124]

On 16 January, the Los Angeles County Department of Public Health confirmed the variant was detected in L.A. County, with public health officials believing that it is spreading in the community.[125]

N501Y change[edit]

A variant with the same N501Y change (which may result in higher transmissibility), but with a separate lineage from the UK variant, was detected in South Africa, and named 501.V2.[48] The N501Y change has also been detected elsewhere: in Australia in June–July, in the US in July, and in Brazil (B.1.1.28 in April and B.1.1.248 since), and it is not yet clear if it arose spontaneously in the UK, or was imported.[126]

Control[edit]

In the presence of an extra infectious variant, stronger physical distancing and lockdown measures were opted for to avoid overwhelming the population due to its tendency to grow exponentially.[127]

All countries of the United Kingdom were affected by domestic travel restrictions in reaction to the increased spread of COVID-19—at least partly attributed to VOC-202012/01—effective from 20 December 2020.[128][129] During December 2020, an increasing number of countries around the world either announced temporary bans on, or were considering banning, passenger travel from the UK, and in several cases from other countries such as the Netherlands and Denmark. Some countries banned flights; others allowed only their nationals to enter, subject to a negative SARS-CoV-2 test.[130] A WHO spokesperson said "Across Europe, where transmission is intense and widespread, countries need to redouble their control and prevention approaches". Most bans by EU countries were for 48 hours, pending an integrated political crisis response meeting of EU representatives on 21 December to evaluate the threat from the new variant and coordinate a joint response.[131][132]

Many countries around the world imposed restrictions on passenger travel from the United Kingdom; neighbouring France also restricted manned goods vehicles (imposing a total ban before devising a testing protocol and permitting their passage once more).[133] Some also applied restrictions on travel from other countries.[43][134][135][136] As of 21 December 2020, at least 42 countries had restricted flights from the UK,[130] and Japan was restricting entry of all foreign nationals after cases of the new variant were detected in the country.[137]

The usefulness of travel bans has been contested as limited in cases where the variant has likely already arrived, especially if the estimated growth rate per week of the virus is higher locally.[138][139]

See also[edit]

References[edit]

Explanatory notes
  1. ^ Written as VUI 202012/01 (Variant Under Investigation, year 2020, month 12, variant 01) by GISAID[140] and the ECDC.[141]
  2. ^ This redesignation is explained in the report:

    SARS-COV-2 variants if considered to have concerning epidemiological, immunological or pathogenic properties are raised for formal investigation. At this point they are designated Variant Under Investigation (VUI) with a year, month, and number. Following risk assessment with the relevant expert committee, they are designated Variant of Concern (VOC). This variant was designated VUI-202012/01 on detection and on review re-designated as VOC-202012/01 on 18/12/20 and GISAID entry EPI_ISL_601443 was declared to be the canonical genome.[8]

Sources
  1. ^ a b c d Volz, Erik; Mishra, Swapnil; Chand, Meera; Barrett, Jeffrey C.; Johnson, Robert; Geidelberg, Lily; Hinsley, Wes R; Laydon, Daniel J; Dabrera, Gavin; O'Toole, Áine; Amato, Roberto; Ragonnet-Cronin, Manon; Harrison, Ian; Jackson, Ben; Ariani, Cristina V.; Boyd, Olivia; Loman, Nicholas J; McCrone, John T; Gonçalves, Sónia; Jorgensen, David; Myers, Richard; Hill, Verity; Jackson, David K.; Gaythorpe, Katy; Groves, Natalie; Sillitoe, John; Kwiatkowski, Dominic P.; Flaxman, Seth; Ratmann, Oliver; Bhatt, Samir; Hopkins, Susan; Gandy, Axel; Rambaut, Andrew; Ferguson, Neil M (4 January 2021). "Transmission of SARS-CoV-2 Lineage B.1.1.7 in England: Insights from linking epidemiological and genetic data". MedarXiv, the preprint server for health sciences. doi:10.1101/2020.12.30.20249034.
  2. ^ a b "New evidence on VUI-202012/01 and review of the public health risk assessment". Retrieved 4 January 2021.
  3. ^ a b "COG-UK Showcase Event - YouTube". www.youtube.com. Retrieved 25 December 2020.
  4. ^ Kahn, Jeremy (22 January 2021). "Highly transmissible U.K. virus strain is also 30% more lethal, Boris Johnson warns". Fortune.
  5. ^ a b c d Peacock, Sharon (22 December 2020). "Here's what we know about the new variant of coronavirus". The Guardian.
  6. ^ For an extensive list of news sources using these terms, see UK Covid-19 variant, UK coronavirus variant and UK variant.
  7. ^ "PHE investigating a novel strain of COVID-19". Public Health England. 14 December 2020.
  8. ^ Chand, Meera; Hopkins, Susan; Dabrera, Gavin; Achison, Christina; Barclay, Wendy; Ferguson, Neil; Volz, Erik; Loman, Nick; Rambaut, Andrew; Barrett, Jeff (21 December 2020). Investigation of novel SARS-COV-2 variant: Variant of Concern 202012/01 (PDF) (Report). Public Health England. p. 2. Retrieved 22 December 2020.
  9. ^ a b c d Rambaut, Andrew; Loman, Nick; Pybus, Oliver; Barclay, Wendy; Barrett, Jeff; Carabelli, Alesandro; Connor, Tom; Peacock, Tom; L. Robertson, David; Vol, Erik (2020). Preliminary genomic characterisation of an emergent SARS-CoV-2 lineage in the UK defined by a novel set of spike mutations (Report). Written on behalf of COVID-19 Genomics Consortium UK. Retrieved 20 December 2020.
  10. ^ Callaway, Ewen (15 January 2021). "'A bloody mess': Confusion reigns over naming of new COVID variants". Nature News & Comment. doi:10.1038/d41586-021-00097-w. Retrieved 18 January 2021. [...] Emma Hodcroft, a molecular epidemiologist at the University of Bern, Switzerland, who is part of Nextstrain, the SARS-CoV-2 naming effort that called the ‘UK variant’ 20I/501Y.V1.
  11. ^ Chand et al., p. 2.
  12. ^ a b "COVID-19 (SARS-CoV-2): information about the new virus variant". Gov.uk. Public Health England. 20 December 2020. Retrieved 21 December 2020.
  13. ^ "New coronavirus variant: What do we know?". BBC. Retrieved 22 December 2020.
  14. ^ a b c d Wise, Jacqui (16 December 2020). "Covid-19: New coronavirus variant is identified in UK". The BMJ. 371: m4857. doi:10.1136/bmj.m4857. ISSN 1756-1833. PMID 33328153. S2CID 229291003.
  15. ^ Chand et al., p. 5.
  16. ^ a b New and Emerging Respiratory Virus Threats Advisory Group (18 December 2020). "NERVTAG meeting on SARS-CoV-2 variant under investigation: VUI-202012/01".
  17. ^ a b Grabowski, Frederic; Preibisch, Grzegorz; Kochańczyk, Marek; Lipniacki, Tomasz (4 January 2021). "SARS-CoV-2 Variant Under Investigation 202012/01 has more than twofold replicative advantage". medRxiv: 2020.12.28.20248906. doi:10.1101/2020.12.28.20248906.
  18. ^ Birnbaum, Michael; Sorensen, Martin Selsoe. "Denmark is sequencing all coronavirus samples and has an alarming view of the U.K. variant". Washington Post. ISSN 0190-8286. Retrieved 23 January 2021.
  19. ^ "NPHET COVID Update 14th January 2021" (PDF).
  20. ^ "Vurdering af smitsomhed af nye varianter" (PDF).
  21. ^ Pylas, Pan (2 January 2021). "U.K. breaks record with 57,725 cases, is urged to keep schools closed". Coronavirus. Retrieved 3 January 2021.
  22. ^ Mahase, Elisabeth (23 December 2020). "Covid-19: What have we learnt about the new variant in the UK?". BMJ. 371: m4944. doi:10.1136/bmj.m4944. ISSN 1756-1833. PMID 33361120. S2CID 229366003.
  23. ^ Kirby, Tony (5 January 2021). "New variant of SARS-CoV-2 in UK causes surge of COVID-19". The Lancet Respiratory Medicine. doi:10.1016/S2213-2600(21)00005-9. ISSN 2213-2600. PMID 33417829.
  24. ^ "Coronavirus Ireland: 52 further deaths and 2,371 new cases of Covid-19 as 'some evidence' UK variant associated with higher death rate". independent. Retrieved 23 January 2021.
  25. ^ "Portugal to close schools amid surge of UK variant".
  26. ^ name. "Fortsat stigning i B.1.1.7 i Danmark". www.ssi.dk (in Danish). Retrieved 23 January 2021.
  27. ^ Ministerie van Volksgezondheid, Welzijn en Sport (16 January 2021). "Advies deel 1 n.a.v. 96e OMT over COVID-19 - Beleidsnota - Rijksoverheid.nl". www.rijksoverheid.nl (in Dutch). Retrieved 23 January 2021.
  28. ^ "Estimated date of dominance of VOC-202012/01 strain in France and projected scenarios" (PDF).
  29. ^ Galloway, Summer E. (2021). "Emergence of SARS-CoV-2 B.1.1.7 Lineage — United States, December 29, 2020–January 12, 2021". Morbidity and Mortality Weekly Report. 70. doi:10.15585/mmwr.mm7003e2. ISSN 0149-2195.
  30. ^ "Update on the Helix, Illumina surveillance program: B.1.1.7 variant of SARS-CoV-2, first identified in the UK, spreads further into the US". Helix. 11 January 2021. Retrieved 20 January 2021.
  31. ^ "How far has the UK COVID-19 variant spread and what pace is it moving at?". www.abc.net.au. 10 January 2021. Retrieved 10 January 2021.
  32. ^ KupferschmidtJan. 5, Kai; 2021; Pm, 3:05 (5 January 2021). "Viral mutations may cause another 'very, very bad' COVID-19 wave, scientists warn". Science | AAAS. Retrieved 10 January 2021.CS1 maint: numeric names: authors list (link)
  33. ^ "Covid-19: New variant 'raises R number by up to 0.7'". BBC News. 1 January 2021. Retrieved 2 January 2021.
  34. ^ Smout, Michael Holden, Alistair (9 January 2021). "UK sees record daily COVID deaths, London hospitals on brink". Reuters. Retrieved 9 January 2021.
  35. ^ COG-UK update on SARS-CoV-2 Spike mutations of special interest | Report 1 (PDF) (Report). COVID-19 Genomics UK Consortium (COG-UK). 20 December 2020. p. 7.
  36. ^ COG-UK (20 December 2020), p. 4.
  37. ^ Yi, C.; Sun, X.; Ye, J.; et al. (2020). "Key residues of the receptor binding motif in the spike protein of SARS-CoV-2 that interact with ACE2 and neutralizing antibodies". Cellular & Molecular Immunology. 17: 621–630. doi:10.1038/s41423-020-0458-z.
  38. ^ a b COG-UK (20 December 2020), p. 1.
  39. ^ a b Chand et al., p. 6.
  40. ^ a b c d "Covid: WHO in 'close contact' with UK over new virus variant". BBC News. 20 December 2020.
  41. ^ a b "As it happened: Stricter Covid rules for Christmas outlined". BBC News. 19 December 2020.
  42. ^ "Official speeches and statements - December 21, 2020". Embassy of France, Washington, D.C. "1. COVID-19 - United Kingdom - Suspension of all travel from the UK to France for 48 hours - Communiqué (Paris - December 20, 2020). Retrieved 8 January 2021.
  43. ^ a b GRIESHABER, KIRSTEN; HUI, SYLVIA (21 December 2020). "More EU nations ban travel from UK, fearing virus variant". AP NEWS.
  44. ^ a b Berger, Miriam (20 December 2020). "Countries across Europe halt flights from Britain over concerns about coronavirus mutation". Washington Post. ISSN 0190-8286. Archived from the original on 20 December 2020. Retrieved 20 December 2020.
  45. ^ Badshah, Nadeem (23 December 2020). "Coronavirus live news: new variant already in 'great majority if not all' European countries, says expert". The Guardian.
  46. ^ a b "COVID-19 Genomics UK (COG-UK) Consortium - Wellcome Sanger Institute". www.sanger.ac.uk. Retrieved 23 December 2020.
  47. ^ a b Zinzula, Luca (2020). "Lost in deletion: The enigmatic ORF8 protein of SARS-CoV-2". Biochemical and Biophysical Research Communications. doi:10.1016/j.bbrc.2020.10.045. PMC 7577707. Retrieved 21 December 2020.
  48. ^ a b Kupferschmidt, Kai (20 December 2020). "Mutant coronavirus in the United Kingdom sets off alarms but its importance remains unclear". Science Mag. Retrieved 21 December 2020.
    See also COG-UK (20 December 2020), p. 4: "69-70del has been identified in variants associated with immune escape in immunocompromised patients [...]."
  49. ^ "New UK variant 'may be more deadly'". BBC.
  50. ^ "New UK Covid variant may be 30% more deadly, says Boris Johnson". The Guardian.
  51. ^ "Rapid evaluation confirms lateral flow devices effective in detecting new COVID-19 variant". GOV.UK. Retrieved 27 December 2020.
  52. ^ Patel-Carstairs, Sunita (19 December 2020). "COVID-19: London and South East set for Tier 4 rules - as new COVID variant 'real cause for concern'". Sky News.
  53. ^ "Covid vaccines 'still effective' against fast-spreading variant". Metro. 20 December 2020.
  54. ^ "Vaccines effective against new virus strain – German health minister". INQUIRER.net. AFP. 21 December 2020.
  55. ^ "Risk related to spread of new SARSCoV-2 variants of concern in the EU/EEA" (PDF).
  56. ^ "Denmark imposes new restrictions over fears of coronavirus variant". Reuters. 5 January 2021. Retrieved 13 January 2021.
  57. ^ Higgins-Dunn, N. (19 December 2020). "The U.K. has identified a new Covid-19 strain that spreads more quickly. Here's what they know". MSNBC.
  58. ^ Gallagher, James (20 December 2020). "New coronavirus variant: What do we know?". BBC News. Retrieved 21 December 2020.
  59. ^ Ross, T.; Spence, E. (19 December 2020). "London Begins Emergency Lockdown as U.K. Fights New Virus Strain". Bloomberg News.
  60. ^ a b Henley, Jon; Jones, Sam; Giuffrida, Angela; Holmes, Oliver (20 December 2020). "EU to hold crisis talks as countries block travel from UK over new Covid strain". The Guardian.
  61. ^ Hope, Alan (20 December 2020). "Netherlands bans flights from UK over new Covid mutation". The Brussels Times.
  62. ^ "Coronavirus, in Italia un soggetto positivo alla variante inglese" [Coronavirus, one person tests positive in Italy for the English variant]. la Repubblica (in Italian). 20 December 2020.
  63. ^ Kelland, Kate (21 December 2020). "Explainer - The new coronavirus variant in Britain: How worrying is it?". Reuters.
  64. ^ Squires, Nick; Orange, Richard (21 December 2020). "New coronavirus strain detected around the globe, from Gibraltar to Australia". The Daily Telegraph.
  65. ^ "Singapore confirms first case of new Covid-19 strain from UK, a 17-year-old student who recently returned from Britain". The Straits Times. 23 December 2020. Retrieved 24 December 2020.
  66. ^ "Israel confirms four cases of new Covid variant". The Guardian. 23 December 2020.
  67. ^ Moriarty, Gerry (23 December 2020). "First case of UK variant strain of Covid-19 confirmed in Northern Ireland". The Irish Times. Retrieved 24 December 2020.
  68. ^ Burger, Ludwig (24 December 2020). "Germany reports first case of coronavirus variant spreading in Britain". Reuters.
  69. ^ "COVID-19 : Nouvelle variante du coronavirus découverte dans deux échantillons en Suisse" (in French). Federal Office of Public Health (Switzerland). 24 December 2020.
  70. ^ Moloney, Eoghan (25 December 2020). "New UK variant of Covid-19 confirmed in Ireland while 1,025 new cases and two further deaths confirmed". Irish Independent. Retrieved 25 December 2020.
  71. ^ Graham-Harrison, Emma (25 December 2020). "Japan reports five cases of coronavirus variant found in UK". The Guardian.
  72. ^ "Ontario identifies first cases of COVID-19 U.K. variant in the province". Canadian Broadcasting Corporation (CBC News). 26 December 2020.
  73. ^ "Coronavirus: More cases of new Covid variant found in Europe". BBC. 26 December 2020. Retrieved 26 December 2020.
  74. ^ "France, Lebanon confirm first cases of new coronavirus variant". Aljazeera. 26 December 2020. Retrieved 26 December 2020.
  75. ^ "Fall av den brittiska virusvarianten upptäckt i Sverige" [Cases of the British virus variant discovered in Sweden] (in Swedish). SVT. 26 December 2020.
  76. ^ "Norway, Portugal confirm first cases of coronavirus variant in travellers from the UK". Newshub. 27 December 2020. Retrieved 28 December 2020.
  77. ^ "Jordan detects two coronavirus variant cases: minister". Gulf News. 27 December 2020. Retrieved 28 December 2020.
  78. ^ "New UK variant Covid strain detected in Finland". Yle News. 28 December 2020.
  79. ^ "South Korea reports cases of COVID variant - and says they came from UK". Sky News. 28 December 2020.
  80. ^ "Chile records first case of British variant of coronavirus - health ministry". Reuters. 29 December 2020.
  81. ^ "Coronavirus: India confirms six cases of new Covid variant". BBC News. 29 December 2020.
  82. ^ "First confirmed case of new Covid-19 strain detected in Pakistan". Hindustan Times. 29 December 2020.
  83. ^ "New Covid strain in UAE: All we know so far". Khaleej Times. 30 December 2020.
  84. ^ "Three cases of new COVID variant detected in Malta". Times of Malta. 30 December 2020.
  85. ^ "Taiwan reports its first case of mutant Covid-19 strain found in Britain". South China Morning Post. 30 December 2020.
  86. ^ "China confirms first case of UK coronavirus variant". France24. 31 December 2020.
  87. ^ "Brazil detects two cases of new coronavirus variant found in UK". Reuters. 31 December 2020.
  88. ^ Knudsen, T.H. (20 December 2020). "Dansk Oxford-professor: Danmark skal gøre alt for, at ny virusvariant ikke spreder sig" [Danish Oxford professor: Denmark must do everything to ensure that new virus variant does not spread] (in Danish). DR.
    See also: "Global sequencing coverage". covidcg.org. Retrieved 23 December 2020.
  89. ^ Mandavilli, Apoorva; Landler, Mark; Castle, Stephen (20 December 2020). "Scientists urge calm about coronavirus mutations, which are not unexpected". New York Times.
  90. ^ Casiano, Louis (29 December 2020). "Colorado health officials confirm new COVID-19 variant in the state". Fox News. Retrieved 29 December 2020.
  91. ^ Nedelman, Michael (6 January 2021). "CDC has found more than 50 US cases of coronavirus variant first identified in UK". CNN. Retrieved 7 January 2021.
  92. ^ Reimann, Nicholas (8 January 2021). "'Close To A Worst-Case Scenario'—Former CDC Director Issues 'Horrifying' Outlook For New Covid Strain". Forbes. Retrieved 15 January 2021.
  93. ^ "Son dakika haberi... Bakan Koca açıkladı, 15 kişide mutasyonlu virüs! İngiltere'den girişler tamamen durduruldu" [Breaking news... Minister Koca announced, mutated virus in 15 people! Entries from the UK are completely suspended] (Video). CNN Türk. Retrieved 4 January 2021.
  94. ^ "SSI: Meget smitsom coronamutation fra England spreder sig i Danmark" [SSI: Very infectious corona mutation [sic] from England spreads in Denmark]. DR (in Danish). 2 January 2021. Retrieved 3 January 2021.
  95. ^ "Udvikling i smitte med engelsk virusvariant af SARS-COV-2 (cluster B.1.1.7)" [Development in infection with English virus variant of SARS-COV-2 (cluster B.1.1.7)] (PDF). Statens Serum Institut (in Danish). 1 January 2021. Retrieved 2 January 2021.
  96. ^ "Status for udvikling af B.1.1.7 i Danmark d. 17. januar 2021" [Status for progression of B.1.1.7 in Denmark on 17 January 2021]. Statens Serum Institut. Retrieved 19 January 2021.
  97. ^ "Vietnam reports first case of new coronavirus variant in woman returning from Britain". The Daily Telegraph. 2 January 2021. Retrieved 2 January 2021.
  98. ^ "New Covid-19 strain found in Luxembourg". luxtimes.lu. Retrieved 4 January 2021.
  99. ^ "Greece detects four cases of new coronavirus variant". Reuters. 3 January 2021.
  100. ^ "Four cases of COVID-19 variant confirmed in Jamaica". 3 January 2021.
  101. ^ Turner, Katy. "Coronavirus: New, fast-spreading British variant found in Cyprus | Cyprus Mail". Retrieved 4 January 2021.
  102. ^ "Six cases at NZ border have had new Covid-19 variant, 19 cases in total in the past three days". Retrieved 4 January 2021 – via TVNZ.
  103. ^ The Thaiger (3 January 2021). "Britons arriving in Thailand test positive for Covid UK variant". The Thaiger. Retrieved 4 January 2021.
  104. ^ "Georgia confirms first case of UK-linked coronavirus strain". 4 January 2021.
  105. ^ "British, South African corornavirus mutations detected in Austria". Reuters. Berlin. 4 January 2021. Retrieved 6 January 2021.
  106. ^ "Iran confirms first case of new Covid-19 variant". France 24. Tehran. 5 January 2021. Retrieved 6 January 2021.
  107. ^ "Oman registers first case of new virus variant in traveller from UK". Dubai. Reuters. 5 January 2021. Retrieved 6 January 2021.
  108. ^ "Cases of the new UK coronavirus variant have been confirmed in Slovakia". Expats.cz. 5 January 2021.
  109. ^ "First Case of COVID-19 Variant Identified in Georgia" (Press release). Atlanta: Georgia Department of Public Health. 5 January 2021. Retrieved 6 January 2021.
  110. ^ "Romania detects first case of British coronavirus variant". Reuters. 8 January 2021.
  111. ^ "Peru Confirms First Case of COVID-19 Variant Strain". 9 January 2021.
  112. ^ Mexico detects first case of new coronavirus strain first seen in UK, 11 January 2021 www.business-standard.com, accessed 15 January 2021
  113. ^ "UK-variant of Covid-19 has reached Malaysia, Dr Noor Hisham confirms". Malay Mail. 11 January 2021.
  114. ^ "New Covid-19 variant found in Latvia". Baltic News Network. 4 January 2021.
  115. ^ "Ecuador records first case of new coronavirus variant". 12 January 2021.
  116. ^ CNN Philippines Staff (13 January 2021). "LIVE UPDATES: COVID-19 pandemic". cnnphilippines.com. Retrieved 15 January 2021.
  117. ^ "Hungary detects UK variant of coronavirus, surgeon general says". Reuters. 13 January 2021.
  118. ^ "Gambia records first two cases of British COVID-19 variant". Reuters. 14 January 2021.
  119. ^ "New COVID-19 strain confirmed to arrive in Dominican Republic from London". 15 January 2021.
  120. ^ "Argentina detects first case of British virus variant". MedicalXpress. 16 January 2021.
  121. ^ "UPDATE 1-Czech Republic detects UK coronavirus variant, to maintain lockdown measures". Reuters. 18 January 2021.
  122. ^ "Kuwait, Morocco report first cases of UK coronavirus variant". The Arab Weekly. 19 January 2021.
  123. ^ "Kuwait registers first cases of new virus variant". Reuters. 19 January 2021.
  124. ^ "Municipality to test 60,000 residents for British strain of coronavirus". DutchNews. 11 January 2021. Retrieved 12 January 2021.
  125. ^ Miller, Devon. "COVID-19 U.K. Variant Confirmed In Los Angeles County". The Valley Post. Retrieved 17 January 2021.
  126. ^ "Expert reaction new restrictions and the new SARS-CoV-2 variant". Science Media Centre. Retrieved 21 December 2020.
  127. ^ "Return to full lockdown might not be enough to control new Covid variant, Sage warns". The Independent. 31 December 2020. Retrieved 31 December 2020.
  128. ^ "Covid-19: Christmas rules tightened for England, Scotland and Wales". BBC News. 20 December 2020. Retrieved 20 December 2020.
  129. ^ Fairnie, Robert (19 December 2020). "Travel between Scotland and rest of UK banned over Christmas as border is closed". edinburghlive. Retrieved 20 December 2020.
  130. ^ a b Halliday, Josh (21 December 2020). "Calls for national lockdown in England to curb spread of new Covid strain". The Guardian.
  131. ^ Henley, Jon; Jones, Sam; Giuffrida, Angela; Holmes, Oliver (20 December 2020). "EU to hold crisis talks as countries block travel from UK over new Covid strain". The Guardian.
  132. ^ Michaels, Daniel (20 December 2020). "Countries Ban Travel From U.K. in Race to Block New Covid-19 Strain". WSJ.
  133. ^ "Kent lorry queue down to 60 vehicles after border closure". www.bbc.co.uk. 29 December 2020. Retrieved 30 December 2020.
  134. ^ Berger, Miriam (20 December 2020). "Countries across Europe halt flights from Britain over concerns about coronavirus mutation". Washington Post. ISSN 0190-8286. Archived from the original on 20 December 2020. Retrieved 20 December 2020.
  135. ^ Quinn, Edna Mohamed(now) Ben; Davies (earlier), Caroline; Davidson, Helen; Wahlquist (earlier), Calla; Walker, Shaun (20 December 2020). "Cases of new strain reported outside of UK – as it happened". The Guardian. ISSN 0261-3077. Retrieved 21 December 2020.
  136. ^ "Covid-19: UK isolation grows as more countries ban travel". BBC News. 21 December 2020.
  137. ^ Ogura, Junko. "Japan will ban entry to foreign nationals after Covid-19 variant detected in country". CNN. Retrieved 27 December 2020.
  138. ^ "California has nation's 2nd confirmed case of virus variant". AP NEWS. 30 December 2020. Retrieved 3 January 2021.
  139. ^ Mallapaty, Smriti (22 December 2020). "What the data say about border closures and COVID spread". Nature. doi:10.1038/d41586-020-03605-6. PMID 33361805. S2CID 229692296.
  140. ^ "UK reports new variant, termed VUI 202012/01". GISAID. Retrieved 20 December 2020.
  141. ^ Threat Assessment Brief: Rapid increase of a SARS-CoV-2 variant with multiple spike protein mutations observed in the United Kingdom (PDF) (Report). European Centre for Disease Prevention and Control (ECDC). 20 December 2020.

External links[edit]