Currently, using modern cladistic taxonomy, Whatcheeriidae is not placed in Amphibia or any other class but simply as its own family within stem-group tetrapods. The analysis below was conducted by Swartz in 2012, showing the relationship of whatcheeriids with other stem-tetrapods.
^Daeschler, E.B.; Clack, J.A.; Shubin, N.H. (2009). "Late Devonian tetrapod remains from Red Hill, Pennsylvania, USA: how much diversity?". Acta Zoologica. 90 (s1): 306–317. doi:10.1111/j.1463-6395.2008.00361.x.