Generalized singular value decomposition: Difference between revisions

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The weighted form of the ''GSVD'' is called as such because, with the correct selection of weights, it ''generalizes'' many techniques (such as [[multidimensional scaling]] and [[linear discriminant analysis]])<ref>Abdi, H. (2007). Singular Value Decomposition (SVD) and Generalized Singular Value Decomposition (GSVD). In N.J. Salkind (Ed.): Encyclopedia of Measurement and Statistics. Thousand Oaks (CA): Sage. pp. 907-912.</ref>
The weighted form of the ''GSVD'' is called as such because, with the correct selection of weights, it ''generalizes'' many techniques (such as [[multidimensional scaling]] and [[linear discriminant analysis]])<ref>Abdi, H. (2007). Singular Value Decomposition (SVD) and Generalized Singular Value Decomposition (GSVD). In N.J. Salkind (Ed.): Encyclopedia of Measurement and Statistics. Thousand Oaks (CA): Sage. pp. 907-912.</ref>



== Applications ==
== Applications ==
Applications include many signal processing endeavours, such as Genomic Signal Processing.<ref>{{Cite journal
Applications include Genomic Signal Processing.<ref>{{Cite journal
| author = O. Alter, P. O. Brown and D. Botstein
| author = O. Alter, P. O. Brown and D. Botstein
| title = Generalized Singular Value Decomposition for Comparative Analysis of Genome-Scale Expression Datasets of Two Different Organisms
| title = Generalized Singular Value Decomposition for Comparative Analysis of Genome-Scale Expression Datasets of Two Different Organisms
Line 48: Line 47:
| journal = PLoS One
| journal = PLoS One
| volume = 7
| volume = 7
| issue = 1
| pages = e30098
| pages = e30098
| month = January
| month = January
| year = 2012
| year = 2012
| doi = 10.1371/journal.pone.0030098
| doi = 10.1371/journal.pone.0030098
}}</ref>
The applications in Genomic Signal Processing also inspired a higher order formulation of the GSVD<ref>{{Cite journal
| author = S. P. Ponnapalli, M. A. Saunders, C. F. Van Loan and O. Alter
| title = A Higher-Order Generalized Singular Value Decomposition for Comparison of Global mRNA Expression from Multiple Organisms
| journal = PLoS One
| volume = 6
| issue = 12
| pages = e28072
| month = December
| year = 2011
| doi = 10.1371/journal.pone.0028072
}}</ref>
}}</ref>



Revision as of 10:38, 29 December 2013

In linear algebra, the generalized singular value decomposition (GSVD) is the name of two different techniques based on the singular value decomposition. The two versions differ because one version decomposes two (or more) matrices (much like higher order PCA) and the other version uses a set of constraints imposed on the left and right singular vectors.

Higher order version

The generalized singular value decomposition (GSVD) is a matrix decomposition more general than the singular value decomposition. It is used to study the conditioning and regularization of linear systems with respect to quadratic semi-norms.

Let , or . Given matrices and , their GSVD is given by

and

where , and are unitary matrices, and is non-singular, where . Also, is non-negative diagonal, and is non-negative block-diagonal, with diagonal blocks; is not always diagonal. It holds that and , and that . This implies . The ratios are called the generalized singular values of and . If is square and invertible, then the generalized singular values are the singular values, and and are the matrices of singular vectors, of the matrix . Further, if , then the GSVD reduces to the singular value decomposition, explaining the name.

Weighted version

The weighted version of the generalized singular value decomposition (GSVD) is a constrained matrix decomposition with constraints imposed on the left and right singular vectors of the singular value decomposition.[1][2][3] This form of the GSVD is an extension of the SVD as such. Given the SVD of an m×n real or complex matrix M

where

Where I is the Identity Matrix and where and are orthonormal given their constraints ( and ). Additionally, and are diagonal matrices of weights. This form of the GSVD is the core of certain techniques, such as Correspondence analysis.

The weighted form of the GSVD is called as such because, with the correct selection of weights, it generalizes many techniques (such as multidimensional scaling and linear discriminant analysis)[4]

Applications

Applications include Genomic Signal Processing.[5][6] The applications in Genomic Signal Processing also inspired a higher order formulation of the GSVD[7]

See also

  • C. C. Paige, and M. A. Saunders: Towards a Generalized Singular Value Decomposition, SIAM J. Numer. Anal., Volume 18, Number 3, June 1981.
  • Gene Golub, and Charles Van Loan, Matrix Computations, Third Edition, Johns Hopkins University Press, Baltimore, 1996, ISBN 0-8018-5414-8
  • Hansen, Per Christian, Rank-Deficient and Discrete Ill-Posed Problems: Numerical Aspects of Linear Inversion, SIAM Monographs on Mathematical Modeling and Computation 4. ISBN 0-89871-403-6
  • LAPACK manual [1]
  • GSVD in Genomic Signal Processing [2]

References

  1. ^ Jolliffe I.T. Principal Component Analysis, Series: Springer Series in Statistics, 2nd ed., Springer, NY, 2002, XXIX, 487 p. 28 illus. ISBN 978-0-387-95442-4
  2. ^ Greenacre, Michael (1983). Theory and Applications of Correspondence Analysis. London: Academic Press. ISBN 0-12-299050-1.
  3. ^ Abdi. H., & Williams, L.J. (2010). "Principal component analysis". Wiley Interdisciplinary Reviews: Computational Statistics,. 2: 433–459.{{cite journal}}: CS1 maint: extra punctuation (link) CS1 maint: multiple names: authors list (link)
  4. ^ Abdi, H. (2007). Singular Value Decomposition (SVD) and Generalized Singular Value Decomposition (GSVD). In N.J. Salkind (Ed.): Encyclopedia of Measurement and Statistics. Thousand Oaks (CA): Sage. pp. 907-912.
  5. ^ O. Alter, P. O. Brown and D. Botstein (2003). "Generalized Singular Value Decomposition for Comparative Analysis of Genome-Scale Expression Datasets of Two Different Organisms". PNAS. 100 (6): 3351–3356. doi:10.1073/pnas.0530258100. {{cite journal}}: Unknown parameter |month= ignored (help)
  6. ^ C. H. Lee,* B. O. Alpert,* P. Sankaranarayanan and O. Alter (2012). "GSVD Comparison of Patient-Matched Normal and Tumor aCGH Profiles Reveals Global Copy-Number Alterations Predicting Glioblastoma Multiforme Survival". PLoS One. 7 (1): e30098. doi:10.1371/journal.pone.0030098. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link) CS1 maint: unflagged free DOI (link)
  7. ^ S. P. Ponnapalli, M. A. Saunders, C. F. Van Loan and O. Alter (2011). "A Higher-Order Generalized Singular Value Decomposition for Comparison of Global mRNA Expression from Multiple Organisms". PLoS One. 6 (12): e28072. doi:10.1371/journal.pone.0028072. {{cite journal}}: Unknown parameter |month= ignored (help)CS1 maint: multiple names: authors list (link) CS1 maint: unflagged free DOI (link)