Haplogroup O-M117: Difference between revisions

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******O2a2b1a1a6b3 (B456)
******O2a2b1a1a6b3 (B456)
**O2a2b1a1b (CTS4960)
**O2a2b1a1b (CTS4960)

== References ==

=== Citations ===
{{Reflist|colwidth=30em}}

=== Sources ===
; Journal articles
*{{cite journal|last1=Black|doi=10.1080/03014460600882561|title=Genetic ancestries in northwest Cambodia|year=2006|first1=M. L.|last2=Dufall|first2=K.|last3=Wise|first3=C.|last4=Sullivan|first4=S.|last5=Bittles|first5=A. H.|journal=Annals of Human Biology|volume=33|issue=5–6|pages=620–7|pmid=17381059}}
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*{{cite journal|last1=Karafet|doi=10.1086/323299|title=Paternal Population History of East Asia: Sources, Patterns, and Microevolutionary Processes|year=2001|first1=Tatiana|last2=Xu|first2=Liping|last3=Du|first3=Ruofu|last4=Wang|first4=William|last5=Feng|first5=Shi|last6=Wells|first6=R.S.|last7=Redd|first7=Alan J.|last8=Zegura|first8=Stephen L.|last9=Hammer|first9=Michael F.|journal=The American Journal of Human Genetics|volume=69|issue=3|pages=615–28|pmid=11481588|pmc=1235490}}
*{{cite journal|last1=Karafet|doi=10.1353/hub.2005.0030|title=Balinese Y-Chromosome Perspective on the Peopling of Indonesia: Genetic Contributions from Pre-Neolithic Hunter-Gatherers, Austronesian Farmers, and Indian Traders|year=2005|first1=Tatiana M.|last2=Lansing|first2=J. S.|last3=Redd|first3=Alan J.|last4=Watkins|first4=Joseph C.|last5=Surata|first5=S. P. K.|last6=Arthawiguna|first6=W. A.|last7=Mayer|first7=Laura|last8=Bamshad|first8=Michael|last9=Jorde|first9=Lynn B.|last10=Hammer|first10=Michael F.|last11=Hammer|first11=M. F.|journal=Human Biology|volume=77|pages=93–114|pmid=16114819|issue=1|display-authors=8}}
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*{{cite journal|last1=Kayser|doi=10.1093/molbev/msl093|title=Melanesian and Asian Origins of Polynesians: MtDNA and Y Chromosome Gradients Across the Pacific|year=2006|first1=M.|journal=Molecular Biology and Evolution|volume=23|issue=11|pages=2234–44|pmid=16923821|last2=Brauer|first2=S|last3=Cordaux|first3=R|last4=Casto|first4=A|last5=Lao|first5=O|last6=Zhivotovsky|first6=LA|last7=Moyse-Faurie|first7=C|last8=Rutledge|first8=RB|last9=Schiefenhoevel|first9=W|last10=Gil|first10=D|last11=Lin|first11=A. A.|last12=Underhill|first12=P. A.|last13=Oefner|first13=P. J.|last14=Trent|first14=R. J.|last15=Stoneking|first15=M|display-authors=8}}
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*{{cite journal|last1=Kim|doi=10.1371/journal.pone.0000172|title=Lack of Association between Y-Chromosomal Haplogroups and Prostate Cancer in the Korean Population|year=2007|editor1-last=Blagosklonny|editor1-first=Mikhail|first1=Wook|last2=Yoo|first2=Tag-Keun|last3=Kim|first3=Sung-Joo|last4=Shin|first4=Dong-Jik|last5=Tyler-Smith|first5=Chris|last6=Jin|first6=Han-Jun|last7=Kwak|first7=Kyoung-Don|last8=Kim|first8=Eun-Tak|last9=Bae|first9=Yoon-Sun|journal=PLoS ONE|volume=2|pages=e172|pmid=17245448|issue=1|pmc=1766463|bibcode=2007PLoSO...2..172K}}
*{{cite journal|last1=Kumar|doi=10.1186/1471-2148-7-47|title=Y-chromosome evidence suggests a common paternal heritage of Austro-Asiatic populations|year=2007|first1=Vikrant|last2=Reddy|first2=Arimanda NS|last3=Babu|first3=Jagedeesh P|last4=Rao|first4=Tipirisetti N|last5=Langstieh|first5=Banrida T|last6=Thangaraj|first6=Kumarasamy|last7=Reddy|first7=Alla G|last8=Singh|first8=Lalji|last9=Reddy|first9=Battini M|journal=BMC Evolutionary Biology|volume=7|pages=47|pmid=17389048|pmc=1851701|issue=1}}
*{{cite journal|last1=Li|doi=10.1186/1471-2148-8-146|title=Paternal genetic affinity between western Austronesians and Daic populations|year=2008|first1=Hui|last2=Wen|first2=Bo|last3=Chen|first3=Shu-Juo|last4=Su|first4=Bing|last5=Pramoonjago|first5=Patcharin|last6=Liu|first6=Yangfan|last7=Pan|first7=Shangling|last8=Qin|first8=Zhendong|last9=Liu|first9=Wenhong|last10=Cheng|first10=Xu|last11=Yang|first11=Ningning|last12=Li|first12=Xin|last13=Tran|first13=Dinhbinh|last14=Lu|first14=Daru|last15=Hsu|first15=Mu-Tsu|last16=Deka|first16=Ranjan|last17=Marzuki|first17=Sangkot|last18=Tan|first18=Chia-Chen|last19=Jin|first19=Li|journal=BMC Evolutionary Biology|volume=8|pages=146|pmid=18482451|pmc=2408594|issue=1}}
*{{cite journal|last1=Nonaka|doi=10.1111/j.1469-1809.2006.00343.x|title=Y-chromosomal Binary Haplogroups in the Japanese Population and their Relationship to 16 Y-STR Polymorphisms|year=2007|first1=I.|last2=Minaguchi|first2=K.|last3=Takezaki|first3=N.|journal=Annals of Human Genetics|volume=71|issue=4|pages=480–95|pmid=17274803}}
*{{cite journal|last1=Reddy|doi=10.1371/journal.pone.0001141|title=Austro-Asiatic Tribes of Northeast India Provide Hitherto Missing Genetic Link between South and Southeast Asia|year=2007|editor1-last=Awadalla|editor1-first=Philip|first1=B. Mohan|last2=Langstieh|first2=B. T.|last3=Kumar|first3=Vikrant|last4=Nagaraja|first4=T.|last5=Reddy|first5=A. N. S.|last6=Meka|first6=Aruna|last7=Reddy|first7=A. G.|last8=Thangaraj|first8=K.|last9=Singh|first9=Lalji|journal=PLoS ONE|volume=2|issue=11|pages=e1141|pmid=17989774|pmc=2065843|bibcode=2007PLoSO...2.1141R}}
*{{cite journal|last1=Shi|doi=10.1186/1471-2148-9-154|title=Mitochondrial and Y-chromosome diversity of the Tharus (Nepal): A reservoir of genetic variation|year=2009|first1=Simona|last2=Pala|first2=Maria|last3=Battaglia|first3=Vincenza|last4=Maranta|first4=Ramona|last5=Achilli|first5=Alessandro|last6=Modiano|first6=Guido|last7=Torroni|first7=Antonio|last8=Semino|first8=Ornella|last9=Santachiara-Benerecetti|first9=Silvana A|journal=BMC Evolutionary Biology|volume=9|pages=154|pmid=19573232|pmc=2720951|issue=1}}
*{{cite journal|last1=Su|doi=10.1073/pnas.97.15.8225|quote=*H6 (=O-M122(xO-M7, O-M134)) in 18/73=24.7% *H8 (=O-M134) in 2/73=2.7% for a total of 20/73=27.4% O-M122 in a pool of seven samples from Micronesia. *13/40=32.5% O-M122(xM7,M134) in a pool of three samples from Polynesia. *9/27=33.3% H6 (=O-M122(xM7,M134)) *6/27=22.2% H8 (=O-M134) for a total of 15/27=55.6% O-M122 in "Malay" sample *2/19=10.5% H6 (=O-M122(xM7,M134)) in "[[Kota Kinabalu]]" sample.|title=Polynesian origins: Insights from the Y chromosome|year=2000|first1=B.|last2=Jin|first2=L.|last3=Underhill|first3=P.|last4=Martinson|first4=J.|last5=Saha|first5=N.|last6=McGarvey|first6=S. T.|last7=Shriver|first7=M. D.|last8=Chu|first8=J.|last9=Oefner|first9=P.|last10=Chakraborty|first10=R.|last11=Deka|first11=R.|journal=Proceedings of the National Academy of Sciences|volume=97|issue=15|pages=8225–8228|display-authors=8|bibcode=2000PNAS...97.8225S}}
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; Websites
* {{cite web |last1=Genographic Project|last2=Wells|first1=R. Spencer|tit

Revision as of 16:54, 4 May 2016

Haplogroup O2a2b1a1-M117 ((also defined by the phylogenetically equivalent mutations M133 and Page23) is a subclade of O2a2b1-M134 that occurs frequently in China and in neighboring countries, especially among Tibeto-Burman-speaking peoples.

O-M117 has been detected in samples of Tamang (38/45 = 84.4%), Tibetans (45/156 = 28.8% or 13/35 = 37.1%), Tharus (57/171 = 33.3%), Han Taiwanese (40/183 = 21.9%), Newars (14/66 = 21.2%), the general population of Kathmandu, Nepal (13/77 = 16.9%), Han Chinese (5/34 = 14.7% Chengdu, 5/35 = 14.3% Harbin, 4/35 = 11.4% Meixian, 3/30 = 10.0% Lanzhou, 2/32 = 6.3% Yili), Tungusic peoples from the PRC (7/45 = 15.6% Hezhe, 4/26 = 15.4% Evenki, 5/35 = 14.3% Manchu, 2/41 = 4.9% Xibe, 1/31 = 3.2% Oroqen), Koreans (4/25 = 16.0% Koreans from the PRC, 5/43 = 11.6% Koreans from South Korea), Mongols (5/45 = 11.1% Inner Mongolian, 3/39 = 7.7% Daur, 3/65 = 4.6% Outer Mongolian), and Uyghurs (2/39 = 5.1% Yili, 1/31 = 3.2% Urumqi) (Xue et al. 2006, Gayden et al. 2007, and Fornarino et al. 2009).

Like O-M7, O-M117 has been found with greatly varying frequency in many samples of Hmong-Mien-speaking peoples, such as Mienic peoples (7/20 = 35.0% Mountain Straggler Mien, 9/28 = 32.1% Blue Kimmun, 6/19 = 31.6% Flower Head Mien, 3/11 = 27.3% Top Board Mien, 3/11 = 27.3% Thin Board Mien, 11/47 = 23.4% Western Mien, 6/33 = 18.2% Northern Mien, 5/31 = 16.1% Lowland Yao, 5/35 = 14.3% Yao from Liannan, Guangdong, 5/37 = 13.5% Zaomin, 5/41 = 12.2% Lowland Kimmun, 3/41 = 7.3% Native Mien, 2/31 = 6.5% Southern Mien, 2/32 = 6.3% Mountain Kimmun, but 0/35 Yao from Bama, Guangxi), She (6/34 = 17.6% She, 4/56 = 7.1% Northern She), and Hmongic peoples (9/100 = 9.0% Miao from Hunan, 4/51 = 7.8% Hmong Daw from northern Laos, 3/49 = 6.1% Miao from Yunnan, 1/49 = 2.0% Miao from Guizhou, but 0/36 Bunu from Guangxi) (Cai et al. 2011 and Xue et al. 2006).

In a study published by Chinese researchers in the year 2006, O-M117 was found with high frequency (8/47 = 17.0%) in a sample of Japanese of undescribed geographical origin (Xue et al. 2006). However, in a study published by Japanese researchers in the year 2007, the same haplogroup was found with much lower frequency (11/263 = 4.2%) in a larger sample of Japanese from various regions of Japan (Nonaka et al. 2007).

In Meghalaya, a predominantly tribal state of Northeast India, O-M133 has been found in 19.7% (14/71) of a sample of the Tibeto-Burman-speaking Garos, but in only 6.2% (22/353, ranging from 0/32 Bhoi to 6/44 = 13.6% Pnar) of a pool of eight samples of the neighboring Khasian-speaking tribes (Reddy et al. 2007).

According to the ISOGG experiental tree, the subclades of O2ab1a1-M117 had shown as below (Owen Lu.et al. 2016):

  • O2a2b1a1 (M117/Page23)
    • O2a2b1a1a (M133)
      • O2a2b1a1a1 (F438)
        • O2a2b1a1a1a (Y17728)
          • O2a2b1a1a1a1 (F155)
          • O2a2b1a1a1a2 (F1754)
            • O2a2b1a1a1a2a (F2137)
          • O2a2b1a1a1a3 (Z25907)
          • O2a2b1a1a2 (FGC23469)
            • O2a2b1a1a2a (F310)
              • O2a2b1a1a2a1 (F402)
                • O2a2b1a1a2a1a (F1531)
      • O2a2b1a1a3 (CTS7634)
        • O2a2b1a1a3a (F317)
          • O2a2b1a1a3a1 (F3039)
        • O2a2b1a1a3b (CTS5488)
      • O2a2b1a1a4 (Z25853)
        • O2a2b1a1a4a (CTS5492)
          • O2a2b1a1a4a1 (CTS6987)
      • O2a2b1a1a5 (CTS10738/M1707)
        • O2a2b1a1a5a (CTS9678)
          • O2a2b1a1a5a1 (Z39663)
        • O2a2b1a1a5b (A9457)
      • O2a2b1a1a6 (CTS4658)
        • O2a2b1a1a6a (CTS5308)
        • O2a2b1a1a6b (Z25928)
          • O2a2b1a1a6b1 (SK1730)
            • O2a2b1a1a6b1a (Z26030)
            • O2a2b1a1a6b1b (Z26010)
            • O2a2b1a1a6b2 (A9462)
            • O2a2b1a1a6b3 (B456)
    • O2a2b1a1b (CTS4960)

References

Citations

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Journal articles
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