List of sequenced algae genomes: Difference between revisions
Content deleted Content added
Created new sections based on clade and began to fill out the tables within them. Will continue to input information very soon |
(No difference)
|
Revision as of 22:45, 11 July 2018
This list of sequenced algae genomes contains algae species known to have publicly available complete genome sequences that have been assembled, annotated and published. Unassembled genomes are not included, nor are organelle only sequences. For plant genomes see the list of sequenced plant genomes. For all kingdoms, see the list of sequenced genomes.
Green Algae
| Organism
strain |
Type | Relevance | Genome
Size |
Number
of Genes Predicted |
Organization | Year of
Completion |
Assembly
Status |
Links |
|---|---|---|---|---|---|---|---|---|
| Auxenochlorella protothecoides | Biofuels | 22.9 Mb | 7,039 | Tsinghua University | 2014[1] | The Greenhouse[2] | ||
| Bathycoccus prasinos | Comparative analysis | 15.1 Mb | 7,900 | Joint Genome Institute | 2012[3] |
Heterokonts/Stramenophiles
| Organism
strain |
Type | Relevance | Genome
Size |
Number
of genes predicted |
Organization | Year of
Completion |
Assembly
Status |
Links |
|---|---|---|---|---|---|---|---|---|
| Aureococcus | Harmful Algal
Bloom |
50.1 Mb | 11,522 | Joint Genome Institute | 2011[4] | The Greenhouse[2] |
Haptophyte
| Organism
strain |
Type | Relevance | Genome
Size |
Number
of genes predicted |
Organization | Year of
Completion |
Assembly
Status |
Links |
|---|---|---|---|---|---|---|---|---|
| Chrysochromulina | Biofuels | 65.8 Mb | Los Alamos National Laboratory | 2018[5] | The Greenhouse[2] |
Brown Algae
| Organism
strain |
Type | Relevance | Genome
Size |
Number
of genes predicted |
Organization | Year of
Completion |
Assembly
Status |
Links |
|---|---|---|---|---|---|---|---|---|
| Ectocarpus
siliculosus |
Model Organism | 195.8 Mb | 16,269 | Genoscope | 2012[6] | The Greenhouse[2] |
Red Algae
| Organism
strain |
Type | Relevance | Genome
Size |
Number
of genes predicted |
Organization | Year of
Completion |
Assembly
Status |
Links |
|---|---|---|---|---|---|---|---|---|
Glaucophyte
| Organism
strain |
Type | Relevance | Genome
Size |
Number
of genes predicted |
Organization | Year of
Completion |
Assembly
Status |
Links |
|---|---|---|---|---|---|---|---|---|
References
- ^ Gao, Chunfang; Wang, Yun; Shen, Yue; Yan, Dong; He, Xi; Dai, Junbiao; Wu, Qingyu (2014-07-10). "Oil accumulation mechanisms of the oleaginous microalga Chlorella protothecoides revealed through its genome, transcriptomes, and proteomes". BMC genomics. 15: 582. doi:10.1186/1471-2164-15-582. ISSN 1471-2164. PMC 4111847. PMID 25012212.
{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link) - ^ a b c d "Home | Greenhouse". greenhouse.lanl.gov. Retrieved 2018-07-11.
- ^ Moreau, Hervé; Verhelst, Bram; Couloux, Arnaud; Derelle, Evelyne; Rombauts, Stephane; Grimsley, Nigel; Van Bel, Michiel; Poulain, Julie; Katinka, Michaël (2012). "Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage". Genome Biology. 13 (8): R74. doi:10.1186/gb-2012-13-8-r74. ISSN 1465-6906. PMC 3491373. PMID 22925495.
{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link) - ^ Gobler, Christopher J.; Berry, Dianna L.; Dyhrman, Sonya T.; Wilhelm, Steven W.; Salamov, Asaf; Lobanov, Alexei V.; Zhang, Yan; Collier, Jackie L.; Wurch, Louie L. (2011-03-15). "Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics". Proceedings of the National Academy of Sciences of the United States of America. 108 (11): 4352–4357. doi:10.1073/pnas.1016106108. ISSN 0027-8424. PMC 3060233. PMID 21368207.
{{cite journal}}: CS1 maint: PMC format (link) - ^ "ASM288719v1 - Genome - Assembly - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-07-11.
- ^ "ASM31002v1 - Genome - Assembly - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-07-11.