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| Original author(s) | Vernalis R&D |
|---|---|
| Developer(s) | University of York, University of Barcelona |
| Initial release | 1998 |
| Stable release | 2013.1
/ June 13, 2014 |
| Repository | sourceforge |
| Written in | C++ |
| Operating system | Linux |
| Type | Protein–ligand docking |
| License | GNU LGPL |
| Website | rdock |
rDock (previously RiboDock) is an open-source molecular docking software that be used for docking small molecules against proteins and nucleic acids. It is primarily designed for high throughput virtual screening and prediction of binding mode.
History
The development of rDock started in 1998 in RiboTargets (later Vernalis (R&D) Ltd).[1] The software was originally called RiboDock.[2] The development went on until 2006 when the software was licensed to University of York for academic distribution and also maintenance.
Six years later, in 2012, Vernalis and University of York decided to release rDock as open-source software to allow its further development by the wider community. The version that was released as open source is developed and supported by University of Barcelona.[3]
See also
References
- ^ "About | rDock". Retrieved 2019-05-22.
- ^ Morley, S. David; Afshar, Mohammad (2004-03-01). "Validation of an empirical RNA-ligand scoring function for fast flexible docking using RiboDock®". Journal of Computer-Aided Molecular Design. 18 (3): 189–208. doi:10.1023/B:JCAM.0000035199.48747.1e. ISSN 0920-654X.
- ^ Ruiz-Carmona, Sergio; Alvarez-Garcia, Daniel; Foloppe, Nicolas; Garmendia-Doval, A. Beatriz; Juhos, Szilveszter; Schmidtke, Peter; Barril, Xavier; Hubbard, Roderick E.; Morley, S. David (2014-04-10). Prlic, Andreas (ed.). "rDock: A Fast, Versatile and Open Source Program for Docking Ligands to Proteins and Nucleic Acids". PLoS Computational Biology. 10 (4): e1003571. doi:10.1371/journal.pcbi.1003571. ISSN 1553-7358. PMC 3983074. PMID 24722481.
{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)
External links
- rDock - The Molecular Docking Platform (University of York)
- rDock - A Fast, Versatile and Open Source Program for Docking Ligands to Proteins and Nucleic Acids (SourceForge)
- Barril Lab Software (University of Barcelona)
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