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|doctoral_advisor =
|doctoral_advisor =
|academic_advisors =
|academic_advisors =
|doctoral_students = {{Plainlist|
|doctoral_students =
* Yongquan Han<ref name="hanphd">{{cite thesis |degree=PhD |first=Yongquan |last=Han |title=Evolutionary Algorithm as an Approach for Computer Assisted Structure Elucidation of Organic and Bioorganic Compounds |publisher=Friedrich-Schiller-Universität Jena |date=2003 |url=http://www.db-thueringen.de/servlets/DocumentServlet?name=FSU_Jena_Han_Yongquan |accessdate=2014-03-19 |archiveurl=https://web.archive.org/web/20140319090313/http://www.db-thueringen.de/servlets/DocumentServlet?name=FSU_Jena_Han_Yongquan |archivedate=2014-03-19 |url-status=dead }}</ref><ref>{{Cite journal
| pmid = 15032528
| year = 2004
| author1 = Han
| first1 = Y
| title = Evolutionary-algorithm-based strategy for computer-assisted structure elucidation
| journal = Journal of Chemical Information and Modeling
| volume = 44
| issue = 2
| pages = 489–98
| last2 = Steinbeck
| first2 = C
| doi = 10.1021/ci034132y
}}</ref>
* Tobias Helmus<ref name="helmusphd">{{cite thesis |degree=PhD |first=Tobias|last=Helmus|title=Encoding, Storing and Searching of Analytical Properties and Assigned Metabolite Structures |publisher=Universität zu Köln |date=2007 |url=http://kups.ub.uni-koeln.de/2080/}}</ref><ref>{{Cite journal
| pmid = 17316423
| year = 2007
| author1 = Spjuth
| first1 = O
| title = Bioclipse: An open source workbench for chemo- and bioinformatics
| journal = BMC Bioinformatics
| volume = 8
| pages = 59
| last2 = Helmus
| first2 = T
| last3 = Willighagen
| first3 = E. L.
| last4 = Kuhn
| first4 = S
| last5 = Eklund
| first5 = M
| last6 = Wagener
| first6 = J
| last7 = Murray-Rust
| first7 = P
| last8 = Steinbeck
| first8 = C
| last9 = Wikberg
| first9 = J. E.
| doi = 10.1186/1471-2105-8-59
| pmc = 1808478
}}</ref><ref>{{Cite journal
| pmid = 17887743
| year = 2007
| author1 = Kuhn
| first1 = S
| title = Chemical Markup, XML, and the World Wide Web. 7. CMLSpect, an XML vocabulary for spectral data
| journal = Journal of Chemical Information and Modeling
| volume = 47
| issue = 6
| pages = 2015–34
| last2 = Helmus
| first2 = T
| last3 = Lancashire
| first3 = R. J.
| last4 = Murray-Rust
| first4 = P
| last5 = Rzepa
| first5 = H. S.
| last6 = Steinbeck
| first6 = C
| last7 = Willighagen
| first7 = E. L.
| doi = 10.1021/ci600531a
}}</ref>
* Thomas Kuhn<ref name="kuhnphd">{{cite thesis |degree=PhD |first=Thomas|last=Kuhn|title=Open Source Workflow Engine for Cheminformatics: From Data Curation to Data Analysis |publisher=Universität zu Köln |date=2009 |url=http://kups.ub.uni-koeln.de/2660/}}</ref><ref>{{Cite journal
| pmid = 20346188
| year = 2010
| author1 = Kuhn
| first1 = T
| title = CDK-Taverna: An open workflow environment for cheminformatics
| journal = BMC Bioinformatics
| volume = 11
| pages = 159
| last2 = Willighagen
| first2 = E. L.
| last3 = Zielesny
| first3 = A
| last4 = Steinbeck
| first4 = C
| doi = 10.1186/1471-2105-11-159
| pmc = 2862046
}}</ref>
* Pablo Moreno<ref name="morenophd">{{cite thesis |degree=PhD |first=Pablo|last=Moreno |title=Bioinformatic methods for species-specific metabolome inference |publisher=University of Cambridge |date=2012 |url=http://www.ebi.ac.uk/research/publications/theses}}</ref><ref>{{Cite journal
| last1 = Foster | first1 = J. M.
| last2 = Moreno | first2 = P.
| last3 = Fabregat | first3 = A.
| last4 = Hermjakob | first4 = H.
| last5 = Steinbeck | first5 = C.
| authorlink5 = Christoph Steinbeck
| last6 = Apweiler | first6 = R.
| authorlink6 = Rolf Apweiler
| last7 = Wakelam | first7 = M. J. O.
| last8 = Vizcaíno | first8 = J. A.
| editor1-last = Oresic
| editor1-first = Matej
| doi = 10.1371/journal.pone.0061951
| title = LipidHome: A Database of Theoretical Lipids Optimized for High Throughput Mass Spectrometry Lipidomics
| journal = PLoS ONE
| volume = 8
| issue = 5
| pages = e61951
| year = 2013
| pmid = 23667450
| pmc =3646891
}}</ref><ref>{{Cite journal
| last1 = Jayaseelan | first1 = K. V.
| last2 = Moreno | first2 = P.
| last3 = Truszkowski | first3 = A.
| last4 = Ertl | first4 = P.
| last5 = Steinbeck | first5 = C.
| authorlink5 = Christoph Steinbeck
| title = Natural product-likeness score revisited: An open-source, open-data implementation
| doi = 10.1186/1471-2105-13-106
| journal = BMC Bioinformatics
| volume = 13
| pages = 106
| year = 2012
| pmid = 22607271
| pmc =3436723
}}</ref>
* John May<ref name="mayphd">{{cite thesis |degree=PhD |first=John|last=May |title=Cheminformatics for Genome Scale Reconstruction |publisher=University of Cambridge |date=2015 |url=https://www.repository.cam.ac.uk/handle/1810/246652}}</ref><ref>{{Cite journal
| last1 = May | first1 = J. W.
| last2 = James | first2 = A. G.
| last3 = Steinbeck | first3 = C.
| authorlink3 = Christoph Steinbeck
| title = Metingear: a development environment for annotating genome-scale metabolic models
| doi = 10.1093/bioinformatics/btt342
| journal = Bioinformatics
| volume = 29
| issue = 17
| pages = 2213–2215
| year = 2013
| pmid = 23766418
| pmc = 3740624
}}</ref><ref>{{Cite journal
| last1 = May | first1 = J. W.
| last2 = Steinbeck | first2 = C.
| authorlink2 = Christoph Steinbeck
| title = Efficient ring perception for the Chemistry Development Kit
| doi = 10.1186/1758-2946-6-3
| journal = Journal of Cheminformatics
| volume = 6
| issue = 3
| year = 2014
| pmid = 24479757
| pmc = 3922685
}}</ref>
* Stephan Beisken<ref name="beiskenphd">{{cite thesis |degree=PhD |first=Stephan|last=Beisken |title=Informatics for Tandem Mass Spectrometry-based Metabolomics |publisher=University of Cambridge |date=2015 |url=https://www.ebi.ac.uk/sites/ebi.ac.uk/files/shared/documents/phdtheses/Beisken.pdf}}</ref><ref>{{Cite journal
| last1 = Beisken | first1 = S.
| last2 = Meinl | first2 = T.
| last3 = Wiswedel | first3 = B.
| last4 = de Figueiredo | first4 = L.
| last5 = Berthold | first5 = M.
| last6 = Steinbeck | first6 = C.
| authorlink6 = Christoph Steinbeck
| title = KNIMECDK: Workflow-driven Cheminformatics
| doi = 10.1186/1471-2105-14-257
| journal = BMC Bioinformatics
| volume = 14
| issue = 1
| pages = 257–260
| year = 2013 | pmid=24103053 | pmc=3765822
}}</ref><ref>{{Cite journal
| last1 = Beisken | first1 = S.
| last2 = Portwood | first2 = D.
| last3 = Seymour | first3 = M.
| last4 = Steinbeck | first4 = C.
| authorlink4 = Christoph Steinbeck
| title = MassCascade: Visual programming for LC-MS data processing in metabolomics
| doi = 10.1002/minf.201400016
| journal = Molecular Informatics
| volume = 33
| issue = 4
| pages = 307–310
| year = 2014
| pmc = 4524413}}</ref><ref>{{Cite journal
| last1 = Beisken | first1 = S.
| last2 = Earll | first2 = M.
| last3 = Baxter | first3 = C.
| last4 = Portwood | first4 = D.
| last5 = Ament | first5 = Z.
| last6 = Kende | first6 = A.
| last7 = Hodgman | first7 = C.
| last8 = Seymour | first8 = G.
| last9 = Smith | first9 = R.
| last10 = Fraser | first10 = P.
| last11 = Seymour | first11 = M.
| last12 = Steinbeck | first12 = C.
| authorlink12 = Christoph Steinbeck
| title = Metabolic differences in ripening of Solanum lycopersicum 'Ailsa Craig' and three monogenic mutants
| doi = 10.1038/sdata.2014.29
| pmid = 25977786
| pmc = 4322568
| journal = Scientific Data
| volume = 1
| issue = 1
| year = 2014 | pages=140029
}}</ref><ref>{{Cite journal
| last1 = Beisken | first1 = S.
| last2 = Conesa | first2 = P.
| last3 = Haug | first3 = K.
| last4 = Reza | first4 = S.
| last5 = Steinbeck | first5 = C.
| authorlink5 = Christoph Steinbeck
| title = SpeckTackle: JavaScript Charts for Spectroscopy
| doi = 10.1186/s13321-015-0065-7
| journal = Journal of Cheminformatics
| volume = 7
| issue = 17
| year = 2015
| pmc = 4432097
}}</ref>
}}
|notable_students =
|notable_students =
|known_for = {{Plainlist|
|known_for = {{Plainlist|

Revision as of 12:47, 30 November 2019

Christoph Steinbeck
Christoph Steinbeck
Christoph Steinbeck
Born1966 (age 57–58)[3]
Neuwied
NationalityGerman
Alma materUniversity of Bonn
Known for
AwardsBlue Obelisk award[1]
Scientific career
Fields
Institutions
ThesisLUCY, ein Programm zur Konstitutionsbestimmung aus Korrelations-NMR-Experimenten sowie Beispiele zur Identifizierung von Naturstoffen durch NMR-Spektroskopie (1995)
Websitewww.steinbeck-molecular.de

Christoph Steinbeck is a chemist born in Neuwied[4] in 1966 and has a professorship for analytical chemistry, cheminformatics and chemometrics at the Friedrich-Schiller-Universität Jena in Thuringia, Germany.[5][6]

Education

Steinbeck received his PhD from the University of Bonn[7] in 1995 for work on LUCY, a software program for structural elucidation from nuclear magnetic resonance (NMR) correlation experiments.[8] In 2003 he received his habilitation.[9]

Research

Steinbeck's research interests[2][10][11][12] have involved the elucidation of chemical structures of metabolites. He was one of the first chemists to develop open source tools for cheminformatics. He initiated JChemPaint,[13] was founder of the Chemistry Development Kit,[14][15] and is responsible for leading the team working on Chemical Entities of Biological Interest (ChEBI).[16][17][18][19] He headed the Cheminformatics and Metabolomics group at the European Molecular Biology Laboratory-European Bioinformatics Institute in Cambridge, United Kingdom from 2008 to 2016. He became a professor for analytical chemistry, cheminformatics and chemometrics at the Friedrich-Schiller-Universität Jena in Thuringia, Germany in March 2017. Together with a few other chemists he was a founder member of the Blue Obelisk[20][21] movement in 2005.[22]

Steinbeck is editor-in-chief of the Journal of Cheminformatics, director of the Metabolomics Society,[23] past chair of the Computers-Information-Chemistry division of the German Chemical Society, past trustee of the Chemical Structure Association Trust,[24] and a lifetime member of the World Association of Theoretically Oriented Chemists.[25]

References

Scholia has a profile for Christoph Steinbeck (Q5111731).
  1. ^ Murray-Rust, P. Blue Obelisk Award – Christoph Steinbeck of CDK. http://blogs.ch.cam.ac.uk/pmr/2006/09/14/blue-obelisk-award-christoph-steinbeck-of-cdk/
  2. ^ a b Christoph Steinbeck publications indexed by Google Scholar Edit this at Wikidata
  3. ^ "Steinbeck, Christoph". DNB, Katalog der Deutschen Nationalbibliothek. German National Library. GND 128763922. {{cite web}}: Missing or empty |url= (help)
  4. ^ www.metabolomicssociety.org/people/christoph-steinbeck
  5. ^ Alcántara, R; Onwubiko, J; Cao, H; Matos, Pd; Cham, J. A.; Jacobsen, J; Holliday, G. L.; Fischer, J. D.; Rahman, S. A.; Jassal, B; Goujon, M; Rowland, F; Velankar, S; López, R; Overington, J. P.; Kleywegt, G. J.; Hermjakob, H; O'Donovan, C; Martín, M. J.; Thornton, J. M.; Steinbeck, C (2013). "The EBI enzyme portal". Nucleic Acids Research. 41 (Database issue): D773–80. doi:10.1093/nar/gks1112. PMC 3531056. PMID 23175605.
  6. ^ Orchard, S; Al-Lazikani, B; Bryant, S; Clark, D; Calder, E; Dix, I; Engkvist, O; Forster, M; Gaulton, A; Gilson, M; Glen, R; Grigorov, M; Hammond-Kosack, K; Harland, L; Hopkins, A; Larminie, C; Lynch, N; Mann, R. K.; Murray-Rust, P; Lo Piparo, E; Southan, C; Steinbeck, C; Wishart, D; Hermjakob, H; Overington, J; Thornton, J (2011). "Minimum information about a bioactive entity (MIABE)". Nature Reviews Drug Discovery. 10 (9): 661–9. doi:10.1038/nrd3503. PMID 21878981.
  7. ^ Steinbeck, Christoph (1995). LUCY, ein Programm zur Konstitutionsbestimmung aus Korrelations-NMR-Experimenten sowie Beispiele zur Identifizierung von Naturstoffen durch NMR-Spektroskopie (PhD thesis). University of Bonn. DNB-IDN 948048905.
  8. ^ Steinbeck, C. (1996). "LUCY—A Program for Structure Elucidation from NMR Correlation Experiments". Angewandte Chemie International Edition in English. 35 (17): 1984–1986. doi:10.1002/anie.199619841.
  9. ^ Steinbeck, Christoph (2003). Zur automatischen Strukturaufklärung organischer Verbindungen (Habilitation thesis). University of Bonn. DNB-IDN 970193602.
  10. ^ Christoph Steinbeck publications indexed by Microsoft Academic
  11. ^ Christoph Steinbeck at DBLP Bibliography Server Edit this at Wikidata
  12. ^ Christoph Steinbeck's publications indexed by the Scopus bibliographic database. (subscription required)
  13. ^ Krause, S.; Willighagen, E.; Steinbeck, C. (2000). "JChemPaint - Using the Collaborative Forces of the Internet to Develop a Free Editor for 2D Chemical Structures". Molecules. 5 (12): 93–98. doi:10.3390/50100093.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  14. ^ Steinbeck, C.; Han, Y.; Kuhn, S.; Horlacher, O.; Luttmann, E.; Willighagen, E. (2003). "The Chemistry Development Kit (CDK): An Open-Source Java Library for Chemo- and Bioinformatics". Journal of Chemical Information and Modeling. 43 (2): 493–500. doi:10.1021/ci025584y. PMC 4901983. PMID 12653513.
  15. ^ Steinbeck, C.; Hoppe, C.; Kuhn, S.; Floris, M.; Guha, R.; Willighagen, E. (2006). "Recent Developments of the Chemistry Development Kit (CDK) - an Open-Source Java Library for Chemo- and Bioinformatics" (PDF). Current Pharmaceutical Design. 12 (17): 2111–2120. doi:10.2174/138161206777585274. PMID 16796559.
  16. ^ Hastings, J.; De Matos, P.; Dekker, A.; Ennis, M.; Harsha, B.; Kale, N.; Muthukrishnan, V.; Owen, G.; Turner, S.; Williams, M.; Steinbeck, C. (2012). "The ChEBI reference database and ontology for biologically relevant chemistry: Enhancements for 2013". Nucleic Acids Research. 41 (Database issue): D456–D463. doi:10.1093/nar/gks1146. PMC 3531142. PMID 23180789.
  17. ^ Matos, P.; Adams, N.; Hastings, J.; Moreno, P.; Steinbeck, C. (2012). "A Database for Chemical Proteomics: ChEBI". Chemical Proteomics. Methods in Molecular Biology. Vol. 803. pp. 273–296. doi:10.1007/978-1-61779-364-6_19. ISBN 978-1-61779-363-9. PMID 22065232.
  18. ^ Degtyarenko, K.; Hastings, J.; De Matos, P.; Ennis, M. (2009). "ChEBI: An Open Bioinformatics and Cheminformatics Resource". In Andreas D. Baxevanis (ed.). Current Protocols in Bioinformatics. Vol. 14. pp. Unit Un14.9. doi:10.1002/0471250953.bi1409s26. ISBN 978-0471250951. PMID 19496059.
  19. ^ Degtyarenko, K.; De Matos, P.; Ennis, M.; Hastings, J.; Zbinden, M.; McNaught, A.; Alcantara, R.; Darsow, M.; Guedj, M.; Ashburner, M. (2007). "ChEBI: A database and ontology for chemical entities of biological interest". Nucleic Acids Research. 36 (Database issue): D344–D350. doi:10.1093/nar/gkm791. PMC 2238832. PMID 17932057.
  20. ^ O'Boyle, N. M.; Guha, R.; Willighagen, E. L.; Adams, S. E.; Alvarsson, J.; Bradley, J. C.; Filippov, I. V.; Hanson, R. M.; Hanwell, M. D.; Hutchison, G. R.; James, C. A.; Jeliazkova, N.; Lang, A. S. D.; Langner, K. M.; Lonie, D. C.; Lowe, D. M.; Pansanel, J. R. M.; Pavlov, D.; Spjuth, O.; Steinbeck, C.; Tenderholt, A. L.; Theisen, K. J.; Murray-Rust, P. (2011). "Open Data, Open Source and Open Standards in chemistry: The Blue Obelisk five years on". Journal of Cheminformatics. 3 (1): 37. doi:10.1186/1758-2946-3-37. PMC 3205042. PMID 21999342.{{cite journal}}: CS1 maint: unflagged free DOI (link)
  21. ^ Guha, R.; Howard, M. T.; Hutchison, G. R.; Murray-Rust, P.; Rzepa, H.; Steinbeck, C.; Wegner, J.; Willighagen, E. L. (2006). "The Blue Obelisk - Interoperability in Chemical Informatics". Journal of Chemical Information and Modeling. 46 (3): 991–998. doi:10.1021/ci050400b. PMC 4878861. PMID 16711717.
  22. ^ Guha, R.; Howard, M. T.; Hutchison, G. R.; Murray-Rust, P.; Rzepa, H.; Steinbeck, C.; Wegner, J.; Willighagen, E. L. (2006). "The Blue Obelisk - Interoperability in Chemical Informatics". Journal of Chemical Information and Modeling. 46 (3): 991–998. doi:10.1021/ci050400b. PMC 4878861. PMID 16711717.
  23. ^ Metabolomics Society Board Archived 2014-03-23 at the Wayback Machine, website of Metabolomics Society
  24. ^ Chemical Structure Association Newsletter, 2006, 12, http://www.csa-trust.org/news06/Issue12.pdf Archived 2016-03-26 at the Wayback Machine
  25. ^ http://www.watoc.net/watoc.members.html

External links

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