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==Education and Research==
==Education and Research==


Fogel was born and raised in [[La Jolla, California]], graduating from [[La Jolla High School]]. He received a B.A. in biology with a minor in earth sciences from the [[University of California, Santa Cruz]] in 1991 and a Ph.D. in biology from the [[University of California, Los Angeles]] in 1998. Fogel has published over 150 peer-reviewed publications in conferences and journals,<ref>https://scholar.google.com/citations?user=DVtxD5QAAAAJ&hl=en</ref> 2 edited books,<ref>https://www.amazon.com/Evolutionary-Computation-Bioinformatics-Artificial-Intelligence/dp/1558607978</ref><ref>https://www.amazon.com/Computational-Intelligence-Bioinformatics-IEEE-Press-ebook/dp/B0017T76EG/ref=sr_1_4?dchild=1&keywords=Fogel+Gary+B&qid=1612974657&s=books&sr=1-4</ref> and 5 patents. As CEO of Natural Selection, Inc., his research focuses on the application of computational intelligence, machine learning, and predictive analytics in areas not limited to: [[Viral evolution]],<ref>https://www.liebertpub.com/doi/full/10.1089/aid.2018.0267</ref><ref>https://link.springer.com/article/10.1007/s13365-017-0586-0</ref><ref>https://ashpublications.org/blood/article/130/Supplement%201/5128/80857</ref><ref>https://jvi.asm.org/content/90/20/8968.short</ref> [[cellular differentiation]],<ref>https://www.sciencedirect.com/science/article/abs/pii/S0378111915009968</ref><ref>https://stemcellsjournals.onlinelibrary.wiley.com/doi/full/10.1002/stem.1739</ref><ref>https://www.sciencedirect.com/science/article/pii/B9780123943958000013</ref> [[drug discovery]],<ref>https://link.springer.com/article/10.1007/s10822-012-9618-2</ref><ref>https://www.sciencedirect.com/science/article/abs/pii/S1055790311002727</ref><ref>https://pubs.acs.org/doi/abs/10.1021/ci9000647</ref> [[RNA structure]],<ref>https://www.sciencedirect.com/science/article/abs/pii/S0303264710000717</ref><ref>https://academic.oup.com/nar/article/30/23/5310/1051796?login=true</ref> [[cis-regulatory elements]],<ref> https://academic.oup.com/nar/article/32/13/3826/2375702?login=true</ref><ref>https://www.sciencedirect.com/science/article/abs/pii/S030326470500033X</ref> [[cancer]],<ref>https://cancerres.aacrjournals.org/content/75/15_Supplement/4845.short</ref> and [[evolutionary game theory]]<ref>https://www.sciencedirect.com/science/article/abs/pii/S0303264797000506</ref><ref>https://www.sciencedirect.com/science/article/abs/pii/S0304380098000684</ref><ref>https://www.sciencedirect.com/science/article/abs/pii/S0303264711000062</ref> as well as the development of evolutionary algorithms and other approaches.<ref>https://www.sciencedirect.com/science/article/abs/pii/S0303264701001678</ref><ref>https://ieeexplore.ieee.org/abstract/document/870818</ref><ref>https://ieeexplore.ieee.org/abstract/document/6557807</ref><ref>https://ieeexplore.ieee.org/abstract/document/1330876</ref><ref>https://www.tandfonline.com/doi/abs/10.1080/01969729508927488</ref>
Fogel was born and raised in [[La Jolla, California]], graduating from [[La Jolla High School]]. He received a B.A. in biology with a minor in earth sciences from the [[University of California, Santa Cruz]] in 1991 and a Ph.D. in biology from the [[University of California, Los Angeles]] in 1998. Fogel has published over 150 peer-reviewed publications in conferences and journals,<ref>{{Cite web|url=https://scholar.google.com/citations?user=DVtxD5QAAAAJ&hl=en|title=Gary Fogel}}</ref> 2 edited books,<ref>{{Cite book|isbn = 1558607978|title = Evolutionary Computation in Bioinformatics|last1 = Fogel|first1 = Gary B.|last2 = Corne|first2 = David W.|year = 2003}}</ref><ref>https://www.amazon.com/Computational-Intelligence-Bioinformatics-IEEE-Press-ebook/dp/B0017T76EG/ref=sr_1_4?dchild=1&keywords=Fogel+Gary+B&qid=1612974657&s=books&sr=1-4</ref> and 5 patents. As CEO of Natural Selection, Inc., his research focuses on the application of computational intelligence, machine learning, and predictive analytics in areas not limited to: [[Viral evolution]],<ref>{{Cite journal|url=https://www.liebertpub.com/doi/full/10.1089/aid.2018.0267|doi=10.1089/aid.2018.0267|title=Emerging Patterns in HIV-1 gp120 Variable Domains in Anatomical Tissues in the Absence of a Plasma Viral Load|year=2019|last1=Lamers|first1=Susanna L.|last2=Fogel|first2=Gary B.|last3=Nolan|first3=David J.|last4=Barbier|first4=Andrew E.|last5=Rose|first5=Rebecca|last6=Singer|first6=Elyse J.|last7=Gonzalez-Perez|first7=Maria Paz|last8=McGrath|first8=Michael S.|journal=Aids Research and Human Retroviruses|volume=35|issue=6|pages=588–596|pmid=30793919|pmc=6588100}}</ref><ref>{{Cite journal|doi = 10.1007/s13365-017-0586-0|title = Brain-specific HIV Nef identified in multiple patients with neurological disease|year = 2018|last1 = Lamers|first1 = Susanna L.|last2 = Fogel|first2 = Gary B.|last3 = Liu|first3 = Enoch S.|last4 = Barbier|first4 = Andrew E.|last5 = Rodriguez|first5 = Christopher W.|last6 = Singer|first6 = Elyse J.|last7 = Nolan|first7 = David J.|last8 = Rose|first8 = Rebecca|last9 = McGrath|first9 = Michael S.|journal = Journal of Neurovirology|volume = 24|issue = 1|pages = 1–15|pmid = 29063512|pmc = 5792318}}</ref><ref>https://ashpublications.org/blood/article/130/Supplement%201/5128/80857</ref><ref>https://jvi.asm.org/content/90/20/8968.short</ref> [[cellular differentiation]],<ref>{{Cite journal|url=https://www.sciencedirect.com/science/article/abs/pii/S0378111915009968|doi = 10.1016/j.gene.2015.08.027|title = MicroRNA dynamics during human embryonic stem cell differentiation to pancreatic endoderm|year = 2015|last1 = Fogel|first1 = Gary B.|last2 = Kai|first2 = Zoya S.|last3 = Zargar|first3 = Sahar|last4 = Hinton|first4 = Andrew|last5 = Jones|first5 = G. Adam|last6 = Wong|first6 = Augusta S.|last7 = Ficici|first7 = Sevan G.|last8 = Lopez|first8 = Ana D.|last9 = King|first9 = Charles C.|journal = Gene|volume = 574|issue = 2|pages = 359–370|pmid = 26297998}}</ref><ref>{{Cite journal|url=https://stemcellsjournals.onlinelibrary.wiley.com/doi/full/10.1002/stem.1739|doi = 10.1002/stem.1739|title = SRNA-seq Analysis of Human Embryonic Stem Cells and Definitive Endoderm Reveals Differentially Expressed MicroRNAs and Novel Isomi ''Rs'' with Distinct Targets|year = 2014|last1 = Hinton|first1 = Andrew|last2 = Hunter|first2 = Shaun E.|last3 = Afrikanova|first3 = Ivka|last4 = Jones|first4 = G. Adam|last5 = Lopez|first5 = Ana D.|last6 = Fogel|first6 = Gary B.|last7 = Hayek|first7 = Alberto|last8 = King|first8 = Charles C.|journal = Stem Cells|volume = 32|issue = 9|pages = 2360–2372|pmid = 24805944|s2cid = 9725569}}</ref><ref>{{Cite book|chapter-url=https://www.sciencedirect.com/science/article/pii/B9780123943958000013|doi = 10.1016/B978-0-12-394395-8.00001-3|chapter = From Pluripotency to Islets|title = Advances in Genetics Volume 79|series = Advances in Genetics|year = 2012|last1 = Hinton|first1 = Andrew|last2 = Hunter|first2 = Shaun|last3 = Reyes|first3 = Gloria|last4 = Fogel|first4 = Gary B.|last5 = King|first5 = Charles C.|volume = 79|pages = 1–34|pmid = 22989764|isbn = 9780123943958}}</ref> [[drug discovery]],<ref>{{Cite journal|doi = 10.1007/s10822-012-9618-2|title = Modeling the evolution of drug resistance in malaria|year = 2012|last1 = Hecht|first1 = David|last2 = Fogel|first2 = Gary B.|journal = Journal of Computer-Aided Molecular Design|volume = 26|issue = 12|pages = 1343–1353|pmid = 23179493|pmc = 3535480|bibcode = 2012JCAMD..26.1343H}}</ref><ref>{{Cite journal|url=https://www.sciencedirect.com/science/article/abs/pii/S1055790311002727|doi = 10.1016/j.ympev.2011.06.005|title = Structural-based analysis of dihydrofolate reductase evolution|year = 2011|last1 = Hecht|first1 = David|last2 = Tran|first2 = Jonathan|last3 = Fogel|first3 = Gary B.|journal = Molecular Phylogenetics and Evolution|volume = 61|issue = 1|pages = 212–230|pmid = 21704717}}</ref><ref>{{Cite journal|url=https://pubs.acs.org/doi/abs/10.1021/ci9000647|doi = 10.1021/ci9000647|title = A Novel in Silico Approach to Drug Discovery via Computational Intelligence|year = 2009|last1 = Hecht|first1 = David|last2 = Fogel|first2 = Gary B.|journal = Journal of Chemical Information and Modeling|volume = 49|issue = 4|pages = 1105–1121|pmid = 19348414}}</ref> [[RNA structure]],<ref>{{Cite journal|doi = 10.1016/j.biosystems.2010.05.001|title = HIV-miR-H1 evolvability during HIV pathogenesis|year = 2010|last1 = Lamers|first1 = Susanna L.|last2 = Fogel|first2 = Gary B.|last3 = McGrath|first3 = Michael S.|journal = Biosystems|volume = 101|issue = 2|pages = 88–96|pmid = 20546828|pmc = 3478900}}</ref><ref>https://academic.oup.com/nar/article/30/23/5310/1051796?login=true</ref> [[cis-regulatory elements]],<ref> https://academic.oup.com/nar/article/32/13/3826/2375702?login=true</ref><ref>{{Cite journal|url=https://www.sciencedirect.com/science/article/abs/pii/S030326470500033X|doi = 10.1016/j.biosystems.2005.03.003|title = A statistical analysis of the TRANSFAC database|year = 2005|last1 = Fogel|first1 = Gary B.|last2 = Weekes|first2 = Dana G.|last3 = Varga|first3 = Gabor|last4 = Dow|first4 = Ernst R.|last5 = Craven|first5 = Andrew M.|last6 = Harlow|first6 = Harry B.|last7 = Su|first7 = Eric W.|last8 = Onyia|first8 = Jude E.|last9 = Su|first9 = Chen|journal = Biosystems|volume = 81|issue = 2|pages = 137–154|pmid = 15941617}}</ref> [[cancer]],<ref>{{Cite journal|url=https://cancerres.aacrjournals.org/content/75/15_Supplement/4845.short|title = Abstract 4845: Microarray analysis of melanoma autologous tumor cell lines used as the source of tumor associated antigens in patient-specific dendritic cell immunotherapy phase II trial in patients with metastatic melanoma|journal = Cancer Research|date = August 2015|volume = 75|issue = 15 Supplement|page = 4845|last1 = Cornforth|first1 = Andrew N.|last2 = Fogel|first2 = Gary|last3 = Carbonell|first3 = Denysha|last4 = Dillman|first4 = Robert O.}}</ref> and [[evolutionary game theory]]<ref>{{Cite journal|url=https://www.sciencedirect.com/science/article/abs/pii/S0303264797000506|doi = 10.1016/S0303-2647(97)00050-6|title = On the instability of evolutionary stable strategies|year = 1997|last1 = Fogel|first1 = David B.|last2 = Fogel|first2 = Gary B.|last3 = Andrews|first3 = Peter C.|journal = Biosystems|volume = 44|issue = 2|pages = 135–152|pmid = 9429748}}</ref><ref>{{Cite journal|url=https://www.sciencedirect.com/science/article/abs/pii/S0304380098000684|doi = 10.1016/S0304-3800(98)00068-4|title = On the instability of evolutionary stable strategies in small populations|year = 1998|last1 = Fogel|first1 = Gary B.|last2 = Andrews|first2 = Peter C.|last3 = Fogel|first3 = David B.|journal = Ecological Modelling|volume = 109|issue = 3|pages = 283–294}}</ref><ref>{{Cite journal|url=https://www.sciencedirect.com/science/article/abs/pii/S0303264711000062|doi = 10.1016/j.biosystems.2011.01.002|title = Simulating natural selection as a culling mechanism on finite populations with the hawk–dove game|year = 2011|last1 = Fogel|first1 = Gary B.|last2 = Fogel|first2 = David B.|journal = Biosystems|volume = 104|issue = 1|pages = 57–62|pmid = 21219966}}</ref> as well as the development of evolutionary algorithms and other approaches.<ref>{{Cite journal|url=https://www.sciencedirect.com/science/article/abs/pii/S0303264701001678|doi = 10.1016/S0303-2647(01)00167-8|title = Multiple-vector self-adaptation in evolutionary algorithms|year = 2001|last1 = Fogel|first1 = David B.|last2 = Fogel|first2 = Gary B.|last3 = Ohkura|first3 = Kazuhiro|journal = Biosystems|volume = 61|issue = 2–3|pages = 155–162|pmid = 11716975}}</ref><ref>{{Cite book|chapter-url=https://ieeexplore.ieee.org/document/870818|doi = 10.1109/CEC.2000.870818|chapter = Evolutionary computation with extinction: Experiments and analysis|title = Proceedings of the 2000 Congress on Evolutionary Computation. CEC00 (Cat. No.00TH8512)|year = 2000|last1 = Fogel|first1 = G.B.|last2 = Greenwood|first2 = G.W.|last3 = Chellapilla|first3 = K.|volume = 2|pages = 1415–1420|isbn = 0-7803-6375-2|s2cid = 14051394}}</ref><ref>{{Cite book|chapter-url=https://ieeexplore.ieee.org/document/6557807|doi = 10.1109/CEC.2013.6557807|chapter = Functions for the analysis of exploration and exploitation|title = 2013 IEEE Congress on Evolutionary Computation|year = 2013|last1 = Ashlock|first1 = Daniel|last2 = Krsic|first2 = Nikola|last3 = Fogel|first3 = Gary B.|pages = 2020–2027|isbn = 978-1-4799-0454-9|s2cid = 12294772}}</ref><ref>{{Cite book|chapter-url=https://ieeexplore.ieee.org/document/1330876|doi = 10.1109/CEC.2004.1330876|chapter = Noisy optimization problems - a particular challenge for differential evolution?|title = Proceedings of the 2004 Congress on Evolutionary Computation (IEEE Cat. No.04TH8753)|year = 2004|last1 = Krink|first1 = T.|last2 = Filipic|first2 = B.|last3 = Fogel|first3 = G.B.|pages = 332–339|isbn = 0-7803-8515-2|s2cid = 6842873}}</ref><ref>{{Cite journal|url=https://www.tandfonline.com/doi/abs/10.1080/01969729508927488|doi = 10.1080/01969729508927488|title = Continuous Evolutionary Programming: Analysis and Experiments|year = 1995|last1 = Fogel|first1 = Gary B.|last2 = Fogel|first2 = David B.|journal = Cybernetics and Systems|volume = 26|pages = 79–90}}</ref>


==Service==
==Service==


He currently serves as an associate editor for IEEE Transactions on Artificial Intelligence,<ref>https://cis.ieee.org/publications/ieee-transactions-on-artificial-intelligence/editors-and-associate-editors</ref> as an editor for [[BioSystems]],<ref>{{Cite web | url=http://www.journals.elsevier.com/biosystems/ |title = BioSystems}}</ref> and on the editorial advisory board of BMC Big Data Analytics.<ref>https://bdataanalytics.biomedcentral.com/</ref> Between 2008-2018 he was editor-in-chief of the Elsevier journal [[BioSystems]].<ref>{{Cite web | url=http://www.journals.elsevier.com/biosystems/ |title = BioSystems}}</ref> He has served previously as an associate editor for IEEE Computational Intelligence Magazine (2005-2010), [[IEEE Transactions on Evolutionary Computation]] (2001-2013), IEEE Transactions on Emerging Topics in Computational Intelligence (2016-2018), [[IEEE/ACM Transactions on Computational Biology and Bioinformatics]] (2004-2008), International Journal of Bioinformatics Research and Applications (2004-2007), International Journal of Data Mining and Bioinformatics (2005-2007), as a consulting editor for the Journal of Computational Intelligence in Bioinformatics (2006-2007), and as an editorial board member of Ecological Informatics (2005-2009).
He currently serves as an associate editor for IEEE Transactions on Artificial Intelligence,<ref>{{Cite web|url=https://cis.ieee.org/publications/ieee-transactions-on-artificial-intelligence/editors-and-associate-editors|title=Editors and Associate Editors - IEEE Computational Intelligence Society}}</ref> as an editor for [[BioSystems]],<ref>{{Cite web | url=http://www.journals.elsevier.com/biosystems/ |title = BioSystems}}</ref> and on the editorial advisory board of BMC Big Data Analytics.<ref>https://bdataanalytics.biomedcentral.com/</ref> Between 2008-2018 he was editor-in-chief of the Elsevier journal [[BioSystems]].<ref>{{Cite web | url=http://www.journals.elsevier.com/biosystems/ |title = BioSystems}}</ref> He has served previously as an associate editor for IEEE Computational Intelligence Magazine (2005-2010), [[IEEE Transactions on Evolutionary Computation]] (2001-2013), IEEE Transactions on Emerging Topics in Computational Intelligence (2016-2018), [[IEEE/ACM Transactions on Computational Biology and Bioinformatics]] (2004-2008), International Journal of Bioinformatics Research and Applications (2004-2007), International Journal of Data Mining and Bioinformatics (2005-2007), as a consulting editor for the Journal of Computational Intelligence in Bioinformatics (2006-2007), and as an editorial board member of Ecological Informatics (2005-2009).


Within the [[IEEE Computational Intelligence Society]], Fogel founded the Bioinformatics and Bioengineering Technical Committee and established the IEEE Computational Intelligence in Bioinformatics and Computational Biology conference series, chairing the first two meetings in 2004 and 2005 in San Diego.<ref>http://www.prnewswire.com/news-releases/dr-gary-fogel-chairs-the-inaugural-2004-ieee-symposium-on-computational-intelligence-in-bioinformatics-and-computational-biology-74341687.html</ref> He serves on the IEEE Computational Intelligence Society Administrative Committee<ref>https://cis.ieee.org/about/adcom</ref> and has served as IEEE CIS Vice President of Conferences (2010-2013, 2019).
Within the [[IEEE Computational Intelligence Society]], Fogel founded the Bioinformatics and Bioengineering Technical Committee and established the IEEE Computational Intelligence in Bioinformatics and Computational Biology conference series, chairing the first two meetings in 2004 and 2005 in San Diego.<ref>http://www.prnewswire.com/news-releases/dr-gary-fogel-chairs-the-inaugural-2004-ieee-symposium-on-computational-intelligence-in-bioinformatics-and-computational-biology-74341687.html</ref> He serves on the IEEE Computational Intelligence Society Administrative Committee<ref>{{Cite web|url=https://cis.ieee.org/about/adcom|title = ADCOM-Administrative Committee - IEEE Computational Intelligence Society}}</ref> and has served as IEEE CIS Vice President of Conferences (2010-2013, 2019).


==Teaching==
==Teaching==
Gary Fogel also serves as adjunct faculty at [[San Diego State University]] in the department of aerospace engineering<ref>https://aerospace.sdsu.edu/faculty/overview</ref> as well as in the computational science research center.<ref>http://www.csrc.sdsu.edu/governance.html</ref> He has authored three books<ref>https://www.amazon.com/gp/product/0967033950/ref=dbs_a_def_rwt_bibl_vppi_i4</ref><ref>https://www.amazon.com/gp/product/B009W1J8M4/ref=dbs_a_def_rwt_bibl_vppi_i1</ref><ref>https://www.amazon.com/gp/product/1531676081/ref=dbs_a_def_rwt_bibl_vppi_i3</ref> and numerous articles on the history of early aviation focusing on gliding and soaring. He is an associate fellow of the [[American Institute of Aeronautics and Astronautics]]<ref>https://www.aiaa.org/docs/default-source/uploadedfiles/membership-and-communities/individual-membership/aiaa-membership-grades/aiaa-associate-fellows-roster.pdf?sfvrsn=dd85832d_0</ref> and serves on the AIAA History Committee.<ref>https://www.aiaahistorycommittee.com/about-us</ref>
Gary Fogel also serves as adjunct faculty at [[San Diego State University]] in the department of aerospace engineering<ref>{{Cite web|url=https://aerospace.sdsu.edu/faculty/overview|title = Faculty, Lecturers and Staff}}</ref> as well as in the computational science research center.<ref>{{Cite web|url=http://www.csrc.sdsu.edu/governance.html|title = CSRC :: Governance}}</ref> He has authored three books<ref>{{Cite book|url=https://www.amazon.com/gp/product/0967033950/ref=dbs_a_def_rwt_bibl_vppi_i4|title=Wind and Wings: The History of Soaring in San Diego|date=July 2000}}</ref><ref>https://www.amazon.com/gp/product/B009W1J8M4/ref=dbs_a_def_rwt_bibl_vppi_i1</ref><ref>{{Cite book|url=https://www.amazon.com/gp/product/1531676081/ref=dbs_a_def_rwt_bibl_vppi_i3|title=Torrey Pines Gliderport|date=7 April 2014}}</ref> and numerous articles on the history of early aviation focusing on gliding and soaring. He is an associate fellow of the [[American Institute of Aeronautics and Astronautics]]<ref>https://www.aiaa.org/docs/default-source/uploadedfiles/membership-and-communities/individual-membership/aiaa-membership-grades/aiaa-associate-fellows-roster.pdf?sfvrsn=dd85832d_0</ref> and serves on the AIAA History Committee.<ref>https://www.aiaahistorycommittee.com/about-us</ref>


==Awards==
==Awards==
Line 18: Line 18:
*2019 - Outstanding Contribution to Aerospace Education, AIAA San Diego Section
*2019 - Outstanding Contribution to Aerospace Education, AIAA San Diego Section
*2016 - Meritorious Service Award, IEEE Computational Intelligence Society<ref>{{Cite journal |doi = 10.1109/MCI.2015.2502123|title = 2016 IEEE CIS Awards &#91;Society Briefs&#93;|year = 2016|last1 = Yen|first1 = Gary G.|journal = IEEE Computational Intelligence Magazine|volume = 11|pages = 4–7}}</ref>
*2016 - Meritorious Service Award, IEEE Computational Intelligence Society<ref>{{Cite journal |doi = 10.1109/MCI.2015.2502123|title = 2016 IEEE CIS Awards &#91;Society Briefs&#93;|year = 2016|last1 = Yen|first1 = Gary G.|journal = IEEE Computational Intelligence Magazine|volume = 11|pages = 4–7}}</ref>
*2016 - Outstanding Contribution to the Community Award, AIAA San Diego Section<ref>https://www.modelaircraft.org/sites/default/files/DrGaryBFogeltoReceiveAIAASanDiegoOutstandingAchievementAward.pdf</ref>
*2016 - Outstanding Contribution to the Community Award, AIAA San Diego Section<ref>{{Cite web|url=https://www.modelaircraft.org/sites/default/files/DrGaryBFogeltoReceiveAIAASanDiegoOutstandingAchievementAward.pdf|title=Untitled Page}}</ref>
*2015 - Outstanding Enhancement of the Image of the Aerospace Profession, AIAA San Diego Section
*2015 - Outstanding Enhancement of the Image of the Aerospace Profession, AIAA San Diego Section
*2012 - Medal for Significant Achievement, San Diego Chapter of [[Sigma Xi]]
*2012 - Medal for Significant Achievement, San Diego Chapter of [[Sigma Xi]]

Revision as of 01:02, 28 June 2021

Gary Bryce Fogel (born 1968) is an American biologist and computer scientist. He is the Chief Executive Officer of Natural Selection, Inc.[1] He is most known for his applications of computational intelligence and machine learning to bioinformatics, computational biology, and industrial optimization.

Education and Research

Fogel was born and raised in La Jolla, California, graduating from La Jolla High School. He received a B.A. in biology with a minor in earth sciences from the University of California, Santa Cruz in 1991 and a Ph.D. in biology from the University of California, Los Angeles in 1998. Fogel has published over 150 peer-reviewed publications in conferences and journals,[2] 2 edited books,[3][4] and 5 patents. As CEO of Natural Selection, Inc., his research focuses on the application of computational intelligence, machine learning, and predictive analytics in areas not limited to: Viral evolution,[5][6][7][8] cellular differentiation,[9][10][11] drug discovery,[12][13][14] RNA structure,[15][16] cis-regulatory elements,[17][18] cancer,[19] and evolutionary game theory[20][21][22] as well as the development of evolutionary algorithms and other approaches.[23][24][25][26][27]

Service

He currently serves as an associate editor for IEEE Transactions on Artificial Intelligence,[28] as an editor for BioSystems,[29] and on the editorial advisory board of BMC Big Data Analytics.[30] Between 2008-2018 he was editor-in-chief of the Elsevier journal BioSystems.[31] He has served previously as an associate editor for IEEE Computational Intelligence Magazine (2005-2010), IEEE Transactions on Evolutionary Computation (2001-2013), IEEE Transactions on Emerging Topics in Computational Intelligence (2016-2018), IEEE/ACM Transactions on Computational Biology and Bioinformatics (2004-2008), International Journal of Bioinformatics Research and Applications (2004-2007), International Journal of Data Mining and Bioinformatics (2005-2007), as a consulting editor for the Journal of Computational Intelligence in Bioinformatics (2006-2007), and as an editorial board member of Ecological Informatics (2005-2009).

Within the IEEE Computational Intelligence Society, Fogel founded the Bioinformatics and Bioengineering Technical Committee and established the IEEE Computational Intelligence in Bioinformatics and Computational Biology conference series, chairing the first two meetings in 2004 and 2005 in San Diego.[32] He serves on the IEEE Computational Intelligence Society Administrative Committee[33] and has served as IEEE CIS Vice President of Conferences (2010-2013, 2019).

Teaching

Gary Fogel also serves as adjunct faculty at San Diego State University in the department of aerospace engineering[34] as well as in the computational science research center.[35] He has authored three books[36][37][38] and numerous articles on the history of early aviation focusing on gliding and soaring. He is an associate fellow of the American Institute of Aeronautics and Astronautics[39] and serves on the AIAA History Committee.[40]

Awards

  • 2019 - Top 100 AI Leaders in Drug Discovery and Advanced Healthcare by Deep Knowledge Analytics[41]
  • 2019 - Outstanding Contribution to Aerospace Education, AIAA San Diego Section
  • 2016 - Meritorious Service Award, IEEE Computational Intelligence Society[42]
  • 2016 - Outstanding Contribution to the Community Award, AIAA San Diego Section[43]
  • 2015 - Outstanding Enhancement of the Image of the Aerospace Profession, AIAA San Diego Section
  • 2012 - Medal for Significant Achievement, San Diego Chapter of Sigma Xi
  • 2012 - Fellow of the Institute of Electrical and Electronics Engineers[44] for contributions to computational intelligence and its application to biology, chemistry, and medicine.

Aeromodeling

Gary Fogel has established national and world records for model aircraft[45] He helped establish the National Model Aviation Heritage program[46] for the Academy of Model Aeronautics. He is a leader member, contest director, and elected fellow of the Academy of Model Aeronautics.

References

  1. ^ "Corporate Management".
  2. ^ "Gary Fogel".
  3. ^ Fogel, Gary B.; Corne, David W. (2003). Evolutionary Computation in Bioinformatics. ISBN 1558607978.
  4. ^ https://www.amazon.com/Computational-Intelligence-Bioinformatics-IEEE-Press-ebook/dp/B0017T76EG/ref=sr_1_4?dchild=1&keywords=Fogel+Gary+B&qid=1612974657&s=books&sr=1-4
  5. ^ Lamers, Susanna L.; Fogel, Gary B.; Nolan, David J.; Barbier, Andrew E.; Rose, Rebecca; Singer, Elyse J.; Gonzalez-Perez, Maria Paz; McGrath, Michael S. (2019). "Emerging Patterns in HIV-1 gp120 Variable Domains in Anatomical Tissues in the Absence of a Plasma Viral Load". Aids Research and Human Retroviruses. 35 (6): 588–596. doi:10.1089/aid.2018.0267. PMC 6588100. PMID 30793919.
  6. ^ Lamers, Susanna L.; Fogel, Gary B.; Liu, Enoch S.; Barbier, Andrew E.; Rodriguez, Christopher W.; Singer, Elyse J.; Nolan, David J.; Rose, Rebecca; McGrath, Michael S. (2018). "Brain-specific HIV Nef identified in multiple patients with neurological disease". Journal of Neurovirology. 24 (1): 1–15. doi:10.1007/s13365-017-0586-0. PMC 5792318. PMID 29063512.
  7. ^ https://ashpublications.org/blood/article/130/Supplement%201/5128/80857
  8. ^ https://jvi.asm.org/content/90/20/8968.short
  9. ^ Fogel, Gary B.; Kai, Zoya S.; Zargar, Sahar; Hinton, Andrew; Jones, G. Adam; Wong, Augusta S.; Ficici, Sevan G.; Lopez, Ana D.; King, Charles C. (2015). "MicroRNA dynamics during human embryonic stem cell differentiation to pancreatic endoderm". Gene. 574 (2): 359–370. doi:10.1016/j.gene.2015.08.027. PMID 26297998.
  10. ^ Hinton, Andrew; Hunter, Shaun E.; Afrikanova, Ivka; Jones, G. Adam; Lopez, Ana D.; Fogel, Gary B.; Hayek, Alberto; King, Charles C. (2014). "SRNA-seq Analysis of Human Embryonic Stem Cells and Definitive Endoderm Reveals Differentially Expressed MicroRNAs and Novel Isomi Rs with Distinct Targets". Stem Cells. 32 (9): 2360–2372. doi:10.1002/stem.1739. PMID 24805944. S2CID 9725569.
  11. ^ Hinton, Andrew; Hunter, Shaun; Reyes, Gloria; Fogel, Gary B.; King, Charles C. (2012). "From Pluripotency to Islets". Advances in Genetics Volume 79. Advances in Genetics. Vol. 79. pp. 1–34. doi:10.1016/B978-0-12-394395-8.00001-3. ISBN 9780123943958. PMID 22989764.
  12. ^ Hecht, David; Fogel, Gary B. (2012). "Modeling the evolution of drug resistance in malaria". Journal of Computer-Aided Molecular Design. 26 (12): 1343–1353. Bibcode:2012JCAMD..26.1343H. doi:10.1007/s10822-012-9618-2. PMC 3535480. PMID 23179493.
  13. ^ Hecht, David; Tran, Jonathan; Fogel, Gary B. (2011). "Structural-based analysis of dihydrofolate reductase evolution". Molecular Phylogenetics and Evolution. 61 (1): 212–230. doi:10.1016/j.ympev.2011.06.005. PMID 21704717.
  14. ^ Hecht, David; Fogel, Gary B. (2009). "A Novel in Silico Approach to Drug Discovery via Computational Intelligence". Journal of Chemical Information and Modeling. 49 (4): 1105–1121. doi:10.1021/ci9000647. PMID 19348414.
  15. ^ Lamers, Susanna L.; Fogel, Gary B.; McGrath, Michael S. (2010). "HIV-miR-H1 evolvability during HIV pathogenesis". Biosystems. 101 (2): 88–96. doi:10.1016/j.biosystems.2010.05.001. PMC 3478900. PMID 20546828.
  16. ^ https://academic.oup.com/nar/article/30/23/5310/1051796?login=true
  17. ^ https://academic.oup.com/nar/article/32/13/3826/2375702?login=true
  18. ^ Fogel, Gary B.; Weekes, Dana G.; Varga, Gabor; Dow, Ernst R.; Craven, Andrew M.; Harlow, Harry B.; Su, Eric W.; Onyia, Jude E.; Su, Chen (2005). "A statistical analysis of the TRANSFAC database". Biosystems. 81 (2): 137–154. doi:10.1016/j.biosystems.2005.03.003. PMID 15941617.
  19. ^ Cornforth, Andrew N.; Fogel, Gary; Carbonell, Denysha; Dillman, Robert O. (August 2015). "Abstract 4845: Microarray analysis of melanoma autologous tumor cell lines used as the source of tumor associated antigens in patient-specific dendritic cell immunotherapy phase II trial in patients with metastatic melanoma". Cancer Research. 75 (15 Supplement): 4845.
  20. ^ Fogel, David B.; Fogel, Gary B.; Andrews, Peter C. (1997). "On the instability of evolutionary stable strategies". Biosystems. 44 (2): 135–152. doi:10.1016/S0303-2647(97)00050-6. PMID 9429748.
  21. ^ Fogel, Gary B.; Andrews, Peter C.; Fogel, David B. (1998). "On the instability of evolutionary stable strategies in small populations". Ecological Modelling. 109 (3): 283–294. doi:10.1016/S0304-3800(98)00068-4.
  22. ^ Fogel, Gary B.; Fogel, David B. (2011). "Simulating natural selection as a culling mechanism on finite populations with the hawk–dove game". Biosystems. 104 (1): 57–62. doi:10.1016/j.biosystems.2011.01.002. PMID 21219966.
  23. ^ Fogel, David B.; Fogel, Gary B.; Ohkura, Kazuhiro (2001). "Multiple-vector self-adaptation in evolutionary algorithms". Biosystems. 61 (2–3): 155–162. doi:10.1016/S0303-2647(01)00167-8. PMID 11716975.
  24. ^ Fogel, G.B.; Greenwood, G.W.; Chellapilla, K. (2000). "Evolutionary computation with extinction: Experiments and analysis". Proceedings of the 2000 Congress on Evolutionary Computation. CEC00 (Cat. No.00TH8512). Vol. 2. pp. 1415–1420. doi:10.1109/CEC.2000.870818. ISBN 0-7803-6375-2. S2CID 14051394.
  25. ^ Ashlock, Daniel; Krsic, Nikola; Fogel, Gary B. (2013). "Functions for the analysis of exploration and exploitation". 2013 IEEE Congress on Evolutionary Computation. pp. 2020–2027. doi:10.1109/CEC.2013.6557807. ISBN 978-1-4799-0454-9. S2CID 12294772.
  26. ^ Krink, T.; Filipic, B.; Fogel, G.B. (2004). "Noisy optimization problems - a particular challenge for differential evolution?". Proceedings of the 2004 Congress on Evolutionary Computation (IEEE Cat. No.04TH8753). pp. 332–339. doi:10.1109/CEC.2004.1330876. ISBN 0-7803-8515-2. S2CID 6842873.
  27. ^ Fogel, Gary B.; Fogel, David B. (1995). "Continuous Evolutionary Programming: Analysis and Experiments". Cybernetics and Systems. 26: 79–90. doi:10.1080/01969729508927488.
  28. ^ "Editors and Associate Editors - IEEE Computational Intelligence Society".
  29. ^ "BioSystems".
  30. ^ https://bdataanalytics.biomedcentral.com/
  31. ^ "BioSystems".
  32. ^ http://www.prnewswire.com/news-releases/dr-gary-fogel-chairs-the-inaugural-2004-ieee-symposium-on-computational-intelligence-in-bioinformatics-and-computational-biology-74341687.html
  33. ^ "ADCOM-Administrative Committee - IEEE Computational Intelligence Society".
  34. ^ "Faculty, Lecturers and Staff".
  35. ^ "CSRC :: Governance".
  36. ^ Wind and Wings: The History of Soaring in San Diego. July 2000.
  37. ^ https://www.amazon.com/gp/product/B009W1J8M4/ref=dbs_a_def_rwt_bibl_vppi_i1
  38. ^ Torrey Pines Gliderport. 7 April 2014.
  39. ^ https://www.aiaa.org/docs/default-source/uploadedfiles/membership-and-communities/individual-membership/aiaa-membership-grades/aiaa-associate-fellows-roster.pdf?sfvrsn=dd85832d_0
  40. ^ https://www.aiaahistorycommittee.com/about-us
  41. ^ http://analytics.dkv.global/data/pdf/AI-for-DD-Q4/Top-100-AI-Leaders.pdf
  42. ^ Yen, Gary G. (2016). "2016 IEEE CIS Awards [Society Briefs]". IEEE Computational Intelligence Magazine. 11: 4–7. doi:10.1109/MCI.2015.2502123.
  43. ^ "Untitled Page" (PDF).
  44. ^ "2012 elevated fellow" (PDF). IEEE Fellows Directory.
  45. ^ https://www.worldairsports.aero/page/ciam-records?f%5B0%5D=field_zone%253Aname%3AWorld&f%5B1%5D=field_record_sport%3A2023&f%5B2%5D=field_athlete%253Atitle_field%3AGary%20B.%20Fogel&record=&order=field_date_single_custom&sort=asc
  46. ^ https://www.modelaircraft.org/museum/history-recognition/national-aeromodeling-heritage-program
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