Crystallographic Information File: Difference between revisions
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| url = {{URL|https://mmcif.wwpdb.org/pdbx-mmcif-home-page.html}} |
| url = {{URL|https://mmcif.wwpdb.org/pdbx-mmcif-home-page.html}} |
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}}<ref>—{{Citation|last=Bichler|first=Martin|title=Grundlegende WWW-Techniken|date=1997|url=http://dx.doi.org/10.1007/978-3-322-86597-7_2|work=Aufbau unternehmensweiter WWW-Informationssysteme|pages=8–32|place=Wiesbaden|publisher=Vieweg+Teubner Verlag|access-date=2021-09-17}}</ref> |
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Closely related is '''mmCIF''', macromolecular CIF,<ref>{{cite journal |last1=Bourne |first1=PE |last2=Berman |first2=HM |last3=McMahon |first3=B |last4=Watenpaugh |first4=KD |last5=Westbrook |first5=JD |last6=Fitzgerald |first6=PM |title=Macromolecular Crystallographic Information File. |journal=Methods in Enzymology |date=1997 |volume=277 |pages=571–90 |doi=10.1016/s0076-6879(97)77032-0 |pmid=18488325 }}</ref> which is intended as an alternative to the [[Protein Data Bank (file format)|Protein Data Bank (PDB) format]]. It is now the default format used by the [[Protein Data Bank]].<ref>{{cite journal |last1=Adams |first1=PD |last2=Afonine |first2=PV |last3=Baskaran |first3=K |last4=Berman |first4=HM |last5=Berrisford |first5=J |last6=Bricogne |first6=G |last7=Brown |first7=DG |last8=Burley |first8=SK |last9=Chen |first9=M |last10=Feng |first10=Z |last11=Flensburg |first11=C |last12=Gutmanas |first12=A |last13=Hoch |first13=JC |last14=Ikegawa |first14=Y |last15=Kengaku |first15=Y |last16=Krissinel |first16=E |last17=Kurisu |first17=G |last18=Liang |first18=Y |last19=Liebschner |first19=D |last20=Mak |first20=L |last21=Markley |first21=JL |last22=Moriarty |first22=NW |last23=Murshudov |first23=GN |last24=Noble |first24=M |last25=Peisach |first25=E |last26=Persikova |first26=I |last27=Poon |first27=BK |last28=Sobolev |first28=OV |last29=Ulrich |first29=EL |last30=Velankar |first30=S |last31=Vonrhein |first31=C |last32=Westbrook |first32=J |last33=Wojdyr |first33=M |last34=Yokochi |first34=M |last35=Young |first35=JY |title=Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB). |journal=Acta Crystallographica Section D |date=1 April 2019 |volume=75 |issue=Pt 4 |pages=451–454 |doi=10.1107/S2059798319004522 |pmid=30988261 |pmc=6465986 }}</ref> |
Closely related is '''mmCIF''', macromolecular CIF,<ref>{{cite journal |last1=Bourne |first1=PE |last2=Berman |first2=HM |last3=McMahon |first3=B |last4=Watenpaugh |first4=KD |last5=Westbrook |first5=JD |last6=Fitzgerald |first6=PM |title=Macromolecular Crystallographic Information File. |journal=Methods in Enzymology |date=1997 |volume=277 |pages=571–90 |doi=10.1016/s0076-6879(97)77032-0 |pmid=18488325 }}</ref> which is intended as an alternative to the [[Protein Data Bank (file format)|Protein Data Bank (PDB) format]]. It is now the default format used by the [[Protein Data Bank]].<ref>{{cite journal |last1=Adams |first1=PD |last2=Afonine |first2=PV |last3=Baskaran |first3=K |last4=Berman |first4=HM |last5=Berrisford |first5=J |last6=Bricogne |first6=G |last7=Brown |first7=DG |last8=Burley |first8=SK |last9=Chen |first9=M |last10=Feng |first10=Z |last11=Flensburg |first11=C |last12=Gutmanas |first12=A |last13=Hoch |first13=JC |last14=Ikegawa |first14=Y |last15=Kengaku |first15=Y |last16=Krissinel |first16=E |last17=Kurisu |first17=G |last18=Liang |first18=Y |last19=Liebschner |first19=D |last20=Mak |first20=L |last21=Markley |first21=JL |last22=Moriarty |first22=NW |last23=Murshudov |first23=GN |last24=Noble |first24=M |last25=Peisach |first25=E |last26=Persikova |first26=I |last27=Poon |first27=BK |last28=Sobolev |first28=OV |last29=Ulrich |first29=EL |last30=Velankar |first30=S |last31=Vonrhein |first31=C |last32=Westbrook |first32=J |last33=Wojdyr |first33=M |last34=Yokochi |first34=M |last35=Young |first35=JY |title=Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB). |journal=Acta Crystallographica Section D |date=1 April 2019 |volume=75 |issue=Pt 4 |pages=451–454 |doi=10.1107/S2059798319004522 |pmid=30988261 |pmc=6465986 }}</ref> |
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==References== |
==References== |
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{{reflist|hits|nozulros=methil|nozulro=123|refs=1234|group=87654|liststyle=09876}} |
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{{reflist}} |
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==External links== |
==External links== |
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Revision as of 02:12, 17 September 2021
| Filename extension |
.cif |
|---|---|
| Internet media type |
chemical/x-cif |
| Type of format | chemical file format |
| Extended from | Self-defining Text Archive and Retrieval |
| Extended to | mmCIF |
| Website | www |
Crystallographic Information File (CIF) is a standard text file format for representing crystallographic information, promulgated by the International Union of Crystallography (IUCr). CIF was developed by the IUCr Working Party on Crystallographic Information in an effort sponsored by the IUCr Commission on Crystallographic Data and the IUCr Commission on Journals. The file format was initially published by Hall, Allen, and Brown[1] and has since been revised, most recently versions 1.1 and 2.0.[2] Full specifications for the format are available at the IUCr website. Many computer programs for molecular viewing are compatible with this format, including Jmol.
| Filename extension |
.cif |
|---|---|
| Internet media type |
chemical/x-mmcif |
| Type of format | chemical file format |
| Extended from | Crystallographic Information File |
| Website | mmcif |
Closely related is mmCIF, macromolecular CIF,[4] which is intended as an alternative to the Protein Data Bank (PDB) format. It is now the default format used by the Protein Data Bank.[5]
Also closely related is Crystallographic Information Framework, a broader system of exchange protocols based on data dictionaries and relational rules expressible in different machine-readable manifestations, including, but not restricted to, Crystallographic Information File and XML.
References
External links
- ^ Hall SR, Allen FH, Brown ID (1991). "The Crystallographic Information File (CIF): a new standard archive file for crystallography". Acta Crystallographica Section A. 47 (6): 655–685. doi:10.1107/S010876739101067X.
- ^ Brown ID, McMahon B (2002). "CIF: the computer language of crystallography". Acta Crystallographica Section B Structural Science. 58 (Pt 3 Pt 1): 317–24. doi:10.1107/s0108768102003464. PMID 12037350.
- ^ —Bichler, Martin (1997), "Grundlegende WWW-Techniken", Aufbau unternehmensweiter WWW-Informationssysteme, Wiesbaden: Vieweg+Teubner Verlag, pp. 8–32, retrieved 2021-09-17
- ^ Bourne, PE; Berman, HM; McMahon, B; Watenpaugh, KD; Westbrook, JD; Fitzgerald, PM (1997). "Macromolecular Crystallographic Information File". Methods in Enzymology. 277: 571–90. doi:10.1016/s0076-6879(97)77032-0. PMID 18488325.
- ^ Adams, PD; Afonine, PV; Baskaran, K; Berman, HM; Berrisford, J; Bricogne, G; Brown, DG; Burley, SK; Chen, M; Feng, Z; Flensburg, C; Gutmanas, A; Hoch, JC; Ikegawa, Y; Kengaku, Y; Krissinel, E; Kurisu, G; Liang, Y; Liebschner, D; Mak, L; Markley, JL; Moriarty, NW; Murshudov, GN; Noble, M; Peisach, E; Persikova, I; Poon, BK; Sobolev, OV; Ulrich, EL; Velankar, S; Vonrhein, C; Westbrook, J; Wojdyr, M; Yokochi, M; Young, JY (1 April 2019). "Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB)". Acta Crystallographica Section D. 75 (Pt 4): 451–454. doi:10.1107/S2059798319004522. PMC 6465986. PMID 30988261.