Parabacteroides: Difference between revisions
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[[File:Parabacteroides distasonis.jpg|thumb|''[[Parabacteroides distasonis|P. distasonis]],'' a species of Parabacteroides within the human gut microbiome.]] |
[[File:Parabacteroides distasonis.jpg|thumb|''[[Parabacteroides distasonis|P. distasonis]],'' a species of Parabacteroides within the human gut microbiome.]] |
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'''''Parabacteroides''''' is a [[Gram-negative]], [[Anaerobic organism|anaerobic]], non-[[spore]]-forming genus from the family |
'''''Parabacteroides''''' is a [[Gram-negative]], [[Anaerobic organism|anaerobic]], non-[[spore]]-forming genus from the family ''[[Tannerellaceae]]''.<ref name=":02">{{Cite web |title=Genus: Parabacteroides |url=https://lpsn.dsmz.de/genus/parabacteroides |access-date=2022-11-18 |website=lpsn.dsmz.de |language=en}}</ref><ref name=":1">{{Cite web |title=UniProt |url=https://www.uniprot.org/taxonomy/375288 |access-date=2022-11-18 |website=www.uniprot.org}}</ref><ref name=":2">{{Cite book |url=https://www.worldcat.org/oclc/45951601 |title=Bergey's manual of systematic bacteriology |date=2011 |publisher=Springer |others=David R. Boone, Richard W. Castenholz, George M. Garrity |isbn=0-387-98771-1 |edition=2nd |location=New York |oclc=45951601}}</ref><ref name=":3">{{Cite book |url=https://www.worldcat.org/oclc/769141612 |title=Schaechter's mechanisms of microbial disease |date=2013 |publisher=Wolters Kluwer Health/Lippincott Williams & Wilkins |others=Moselio Schaechter, N. Cary Engleberg, Victor J. DiRita, Terence Dermody |isbn=978-0-7817-8744-4 |edition=5th |location=Philadelphia |oclc=769141612}}</ref> |
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First isolated from fecal specimen in 1933, type strain ''[[Parabacteroides distasonis]]'' was originally classified under the name ''Bacteroides distasonis.<ref>{{Cite journal |last=Eggerth |first=A. H. |last2=Gagnon |first2=B. H. |date=1933 |title=The Bacteroides of Human Feces |url=https://pubmed.ncbi.nlm.nih.gov/16559622/ |journal=Journal of Bacteriology |volume=25 |issue=4 |pages=389–413 |doi=10.1128/jb.25.4.389-413.1933 |issn=0021-9193 |pmid=16559622}}</ref>'' The strain was re-classified to form the new genus ''Parabacteroides'' in 2006.<ref name=":4">{{Cite journal |last=Sakamoto |first=Mitsuo |last2=Benno |first2=YoshimiYR 2006 |title=Reclassification of Bacteroides distasonis, Bacteroides goldsteinii and Bacteroides merdae as Parabacteroides distasonis gen. nov., comb. nov., Parabacteroides goldsteinii comb. nov. and Parabacteroides merdae comb. nov. |url=https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.64192-0 |journal=International Journal of Systematic and Evolutionary Microbiology |volume=56 |issue=7 |pages=1599–1605 |doi=10.1099/ijs.0.64192-0 |issn=1466-5034}}</ref> ''Parabacteroides'' currently comprise 21 phylogenetically, ecologically, and metabolically diverse species, 11 of which are validly published in the taxonomic database [[List of Prokaryotic names with Standing in Nomenclature]] (LPSN).<ref name=":02" /> |
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Within the ''Parabacteroides'' genus, species ''[[Parabacteroides distasonis|P. distasonis]] and [[Parabacteroides goldsteinii|P. goldsteinii]]'' have been associated with both beneficial and pathogenic effects in human health, relating to their integral role in [[gut microbiota]] along the digestive tract.<ref>{{Cite journal |last=Wang |first=Kai |last2=Liao |first2=Mingfang |last3=Zhou |first3=Nan |last4=Bao |first4=Li |last5=Ma |first5=Ke |last6=Zheng |first6=Zhongyong |last7=Wang |first7=Yujing |last8=Liu |first8=Chang |last9=Wang |first9=Wenzhao |last10=Wang |first10=Jun |last11=Liu |first11=Shuang-Jiang |last12=Liu |first12=Hongwei |date=2019-01-02 |title=Parabacteroides distasonis Alleviates Obesity and Metabolic Dysfunctions via Production of Succinate and Secondary Bile Acids |url=https://www.sciencedirect.com/science/article/pii/S2211124718319582 |journal=Cell Reports |language=en |volume=26 |issue=1 |pages=222–235.e5 |doi=10.1016/j.celrep.2018.12.028 |issn=2211-1247}}</ref><ref>{{Cite journal |last=Zeng |first=Qiang |last2=Li |first2=Dongfang |last3=He |first3=Yuan |last4=Li |first4=Yinhu |last5=Yang |first5=Zhenyu |last6=Zhao |first6=Xiaolan |last7=Liu |first7=Yanhong |last8=Wang |first8=Yu |last9=Sun |first9=Jing |last10=Feng |first10=Xin |last11=Wang |first11=Fei |last12=Chen |first12=Jiaxing |last13=Zheng |first13=Yuejie |last14=Yang |first14=Yonghong |last15=Sun |first15=Xuelin |date=2019-09-17 |title=Discrepant gut microbiota markers for the classification of obesity-related metabolic abnormalities |url=https://www.nature.com/articles/s41598-019-49462-w |journal=Scientific Reports |language=en |volume=9 |issue=1 |pages=13424 |doi=10.1038/s41598-019-49462-w |issn=2045-2322}}</ref><ref>{{Cite journal |last=Wu |first=Tsung-Ru |last2=Lin |first2=Chuan-Sheng |last3=Chang |first3=Chih-Jung |last4=Lin |first4=Tzu-Lung |last5=Martel |first5=Jan |last6=Ko |first6=Yun-Fei |last7=Ojcius |first7=David M. |last8=Lu |first8=Chia-Chen |last9=Young |first9=John D. |last10=Lai |first10=Hsin-Chih |date=2019-02-01 |title=Gut commensal Parabacteroides goldsteinii plays a predominant role in the anti-obesity effects of polysaccharides isolated from Hirsutella sinensis |url=https://gut.bmj.com/content/68/2/248 |journal=Gut |language=en |volume=68 |issue=2 |pages=248–262 |doi=10.1136/gutjnl-2017-315458 |issn=0017-5749 |pmid=30007918}}</ref> |
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== Species == |
== Species == |
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{{Reflist}} |
{{Reflist}} |
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== Further |
== Further Reading == |
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* {{cite journal|last1=Krogh|first1=Thøger Jensen|last2=Agergaard|first2=Charlotte Nielsen|last3=Møller-Jensen|first3=Jakob|last4=Justesen|first4=Ulrik Stenz|title=Draft Genome Sequence of Parabacteroides goldsteinii with Putative Novel Metallo-β-Lactamases Isolated from a Blood Culture from a Human Patient|journal=Genome Announcements|date=20 August 2015|volume=3|issue=4|pages=e00937-15|doi=10.1128/genomeA.00937-15|pmid=26294633|pmc=4543511}} |
* {{cite journal|last1=Krogh|first1=Thøger Jensen|last2=Agergaard|first2=Charlotte Nielsen|last3=Møller-Jensen|first3=Jakob|last4=Justesen|first4=Ulrik Stenz|title=Draft Genome Sequence of Parabacteroides goldsteinii with Putative Novel Metallo-β-Lactamases Isolated from a Blood Culture from a Human Patient|journal=Genome Announcements|date=20 August 2015|volume=3|issue=4|pages=e00937-15|doi=10.1128/genomeA.00937-15|pmid=26294633|pmc=4543511}} |
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* {{cite journal|last1=Sakamoto|first1=M|last2=Benno|first2=Y|title=Reclassification of Bacteroides distasonis, Bacteroides goldsteinii and Bacteroides merdae as Parabacteroides distasonis gen. nov., comb. nov., Parabacteroides goldsteinii comb. nov. and Parabacteroides merdae comb. nov.|journal=International Journal of Systematic and Evolutionary Microbiology|date=July 2006|volume=56|issue=Pt 7|pages=1599–605|doi=10.1099/ijs.0.64192-0|pmid=16825636|doi-access=free}} |
* {{cite journal|last1=Sakamoto|first1=M|last2=Benno|first2=Y|title=Reclassification of Bacteroides distasonis, Bacteroides goldsteinii and Bacteroides merdae as Parabacteroides distasonis gen. nov., comb. nov., Parabacteroides goldsteinii comb. nov. and Parabacteroides merdae comb. nov.|journal=International Journal of Systematic and Evolutionary Microbiology|date=July 2006|volume=56|issue=Pt 7|pages=1599–605|doi=10.1099/ijs.0.64192-0|pmid=16825636|doi-access=free}} |
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* {{cite journal|last1=Bilen|first1=Melhem|last2=Cadoret|first2=Frederic|last3=Daoud|first3=Ziad|last4=Fournier|first4=Pierre-Edouard|last5=Raoult|first5=Didier|title=Parabacteroides timonensis sp. nov., identified in human stool|journal=Human Microbiome Journal|date=December 2016|volume=2|pages=1–2|doi=10.1016/j.humic.2016.10.002|doi-access=free}} |
* {{cite journal|last1=Bilen|first1=Melhem|last2=Cadoret|first2=Frederic|last3=Daoud|first3=Ziad|last4=Fournier|first4=Pierre-Edouard|last5=Raoult|first5=Didier|title=Parabacteroides timonensis sp. nov., identified in human stool|journal=Human Microbiome Journal|date=December 2016|volume=2|pages=1–2|doi=10.1016/j.humic.2016.10.002|doi-access=free}} |
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* {{cite book|last1= |
* {{cite book |last1=Versalovic |first1=James |title=Manual of Clinical Microbiology |date=2011 |publisher=ASM Press |location=Washington, DC |isbn=978-1-555-81463-2 |edition=10th}} |
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* {{cite book|last1= |
* {{cite book |last1=Gophna |first1=Uri |title=Lateral Gene Transfer in Evolution |date=2013 |publisher=Springer |location=New York, NY |isbn=978-1-461-47780-8}} |
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{{Taxonbar|from=Q21219470}} |
{{Taxonbar|from=Q21219470}} |
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Revision as of 05:34, 9 December 2022
| Parabacteroides | |
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| Scientific classification | |
| Domain: | |
| Phylum: | |
| Class: | |
| Order: | |
| Family: | |
| Genus: | Parabacteroides Sakamoto and Benno 2006[1]
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| Type species | |
| Parabacteroides distasonis[1] | |
| Species | |
|
P. acidifaciens[1] | |
Parabacteroides is a Gram-negative, anaerobic, non-spore-forming genus from the family Tannerellaceae.[2][3][4][5]
First isolated from fecal specimen in 1933, type strain Parabacteroides distasonis was originally classified under the name Bacteroides distasonis.[6] The strain was re-classified to form the new genus Parabacteroides in 2006.[7] Parabacteroides currently comprise 21 phylogenetically, ecologically, and metabolically diverse species, 11 of which are validly published in the taxonomic database List of Prokaryotic names with Standing in Nomenclature (LPSN).[2]
Within the Parabacteroides genus, species P. distasonis and P. goldsteinii have been associated with both beneficial and pathogenic effects in human health, relating to their integral role in gut microbiota along the digestive tract.[8][9][10]
Species
The genus Parabacteroides comprises the following species, 11 of which are validly published by the List of Prokaryotic names with Standing in Nomenclature (LPSN): [11]
| Validly Named by the LPSN [11] | Not Validly Named by the LPSN [11] |
|---|---|
|
|
References
- ^ a b c d e f g h i j k l m n o p q r s t u v w Parte, A.C. "Parabacteroides". LPSN.
- ^ a b "Genus: Parabacteroides". lpsn.dsmz.de. Retrieved 2022-11-18.
- ^ "UniProt". www.uniprot.org. Retrieved 2022-11-18.
- ^ Bergey's manual of systematic bacteriology. David R. Boone, Richard W. Castenholz, George M. Garrity (2nd ed.). New York: Springer. 2011. ISBN 0-387-98771-1. OCLC 45951601.
{{cite book}}: CS1 maint: others (link) - ^ Schaechter's mechanisms of microbial disease. Moselio Schaechter, N. Cary Engleberg, Victor J. DiRita, Terence Dermody (5th ed.). Philadelphia: Wolters Kluwer Health/Lippincott Williams & Wilkins. 2013. ISBN 978-0-7817-8744-4. OCLC 769141612.
{{cite book}}: CS1 maint: others (link) - ^ Eggerth, A. H.; Gagnon, B. H. (1933). "The Bacteroides of Human Feces". Journal of Bacteriology. 25 (4): 389–413. doi:10.1128/jb.25.4.389-413.1933. ISSN 0021-9193. PMID 16559622.
- ^ Sakamoto, Mitsuo; Benno, YoshimiYR 2006. "Reclassification of Bacteroides distasonis, Bacteroides goldsteinii and Bacteroides merdae as Parabacteroides distasonis gen. nov., comb. nov., Parabacteroides goldsteinii comb. nov. and Parabacteroides merdae comb. nov". International Journal of Systematic and Evolutionary Microbiology. 56 (7): 1599–1605. doi:10.1099/ijs.0.64192-0. ISSN 1466-5034.
{{cite journal}}: CS1 maint: numeric names: authors list (link) - ^ Wang, Kai; Liao, Mingfang; Zhou, Nan; Bao, Li; Ma, Ke; Zheng, Zhongyong; Wang, Yujing; Liu, Chang; Wang, Wenzhao; Wang, Jun; Liu, Shuang-Jiang; Liu, Hongwei (2019-01-02). "Parabacteroides distasonis Alleviates Obesity and Metabolic Dysfunctions via Production of Succinate and Secondary Bile Acids". Cell Reports. 26 (1): 222–235.e5. doi:10.1016/j.celrep.2018.12.028. ISSN 2211-1247.
- ^ Zeng, Qiang; Li, Dongfang; He, Yuan; Li, Yinhu; Yang, Zhenyu; Zhao, Xiaolan; Liu, Yanhong; Wang, Yu; Sun, Jing; Feng, Xin; Wang, Fei; Chen, Jiaxing; Zheng, Yuejie; Yang, Yonghong; Sun, Xuelin (2019-09-17). "Discrepant gut microbiota markers for the classification of obesity-related metabolic abnormalities". Scientific Reports. 9 (1): 13424. doi:10.1038/s41598-019-49462-w. ISSN 2045-2322.
- ^ Wu, Tsung-Ru; Lin, Chuan-Sheng; Chang, Chih-Jung; Lin, Tzu-Lung; Martel, Jan; Ko, Yun-Fei; Ojcius, David M.; Lu, Chia-Chen; Young, John D.; Lai, Hsin-Chih (2019-02-01). "Gut commensal Parabacteroides goldsteinii plays a predominant role in the anti-obesity effects of polysaccharides isolated from Hirsutella sinensis". Gut. 68 (2): 248–262. doi:10.1136/gutjnl-2017-315458. ISSN 0017-5749. PMID 30007918.
- ^ a b c "Genus: Parabacteroides". lpsn.dsmz.de. Retrieved 2022-11-18.
Further Reading
- Krogh, Thøger Jensen; Agergaard, Charlotte Nielsen; Møller-Jensen, Jakob; Justesen, Ulrik Stenz (20 August 2015). "Draft Genome Sequence of Parabacteroides goldsteinii with Putative Novel Metallo-β-Lactamases Isolated from a Blood Culture from a Human Patient". Genome Announcements. 3 (4): e00937-15. doi:10.1128/genomeA.00937-15. PMC 4543511. PMID 26294633.
- Sakamoto, M; Benno, Y (July 2006). "Reclassification of Bacteroides distasonis, Bacteroides goldsteinii and Bacteroides merdae as Parabacteroides distasonis gen. nov., comb. nov., Parabacteroides goldsteinii comb. nov. and Parabacteroides merdae comb. nov". International Journal of Systematic and Evolutionary Microbiology. 56 (Pt 7): 1599–605. doi:10.1099/ijs.0.64192-0. PMID 16825636.
- Bilen, Melhem; Cadoret, Frederic; Daoud, Ziad; Fournier, Pierre-Edouard; Raoult, Didier (December 2016). "Parabacteroides timonensis sp. nov., identified in human stool". Human Microbiome Journal. 2: 1–2. doi:10.1016/j.humic.2016.10.002.
- Versalovic, James (2011). Manual of Clinical Microbiology (10th ed.). Washington, DC: ASM Press. ISBN 978-1-555-81463-2.
- Gophna, Uri (2013). Lateral Gene Transfer in Evolution. New York, NY: Springer. ISBN 978-1-461-47780-8.
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