Desulfovibrio alcoholivorans: Difference between revisions
Subsection Classification copied from sandbox User:Jihulee/sandbox |
Taxonomy and Phylogeny copied from sandbox User:Jihulee/sandbox |
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=== Classification === |
=== Classification === |
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''Desulfovibrio alcoholivorans'' was found to be a [[Gram-negative bacteria|Gram-negative]], curved, [[Spore|non-spore forming]], and [[Motility|motile]] organism with metabolic ability to [[Redox|reduce]] sulfate.<ref name=":33">{{Cite journal |last=Qatibi |first=A. I. |last2=Nivière |first2=V. |last3=Garcia |first3=J. L. |date=1991-01 |title=Desulfovibrio alcoholovorans sp. nov., a sulfate-reducing bacterium able to grow on glycerol, 1,2- and 1,3-propanediol |url=http://link.springer.com/10.1007/BF00248608 |journal=Archives of Microbiology |language=en |volume=155 |issue=2 |pages=143–148 |doi=10.1007/BF00248608 |issn=0302-8933}}</ref> These factors supported the characterization of the bacterium under the ''Desulfovibrio'' genus.<ref name=":2">{{Cite journal |last=Ouattara |first=A. S. |last2=Patel |first2=B. K. C. |last3=Cayol |first3=J.-L. |last4=Cuzin |first4=N. |last5=Traore |first5=A. S. |last6=Garcia |first6=J.-L. |date=1999-04-01 |title=NOTE: Isolation and characterization of Desulfovibrio burkinensis sp. nov. from an African ricefield, and phylogeny of Desulfovibrio alcoholivorans |url=https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/00207713-49-2-639 |journal=International Journal of Systematic and Evolutionary Microbiology |language=en |volume=49 |issue=2 |pages=639–643 |doi=10.1099/00207713-49-2-639 |issn=1466-5026}}</ref> A defining factor that set ''D. alcoholivorans'' apart from existing strains was its ability to [[Redox|oxidize]] [[1,3-Propanediol|1,3-propanediol]] into [[acetate]].<ref name=":33" /> |
''Desulfovibrio alcoholivorans'' was found to be a [[Gram-negative bacteria|Gram-negative]], curved, [[Spore|non-spore forming]], and [[Motility|motile]] organism with metabolic ability to [[Redox|reduce]] sulfate.<ref name=":33">{{Cite journal |last=Qatibi |first=A. I. |last2=Nivière |first2=V. |last3=Garcia |first3=J. L. |date=1991-01 |title=Desulfovibrio alcoholovorans sp. nov., a sulfate-reducing bacterium able to grow on glycerol, 1,2- and 1,3-propanediol |url=http://link.springer.com/10.1007/BF00248608 |journal=Archives of Microbiology |language=en |volume=155 |issue=2 |pages=143–148 |doi=10.1007/BF00248608 |issn=0302-8933}}</ref> These factors supported the characterization of the bacterium under the ''Desulfovibrio'' genus.<ref name=":2">{{Cite journal |last=Ouattara |first=A. S. |last2=Patel |first2=B. K. C. |last3=Cayol |first3=J.-L. |last4=Cuzin |first4=N. |last5=Traore |first5=A. S. |last6=Garcia |first6=J.-L. |date=1999-04-01 |title=NOTE: Isolation and characterization of Desulfovibrio burkinensis sp. nov. from an African ricefield, and phylogeny of Desulfovibrio alcoholivorans |url=https://www.microbiologyresearch.org/content/journal/ijsem/10.1099/00207713-49-2-639 |journal=International Journal of Systematic and Evolutionary Microbiology |language=en |volume=49 |issue=2 |pages=639–643 |doi=10.1099/00207713-49-2-639 |issn=1466-5026}}</ref> A defining factor that set ''D. alcoholivorans'' apart from existing strains was its ability to [[Redox|oxidize]] [[1,3-Propanediol|1,3-propanediol]] into [[acetate]].<ref name=":33" /> |
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== Taxonomy and Phylogeny == |
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''Desulfovibrio alcoholivorans'' belong to the [[Domain (biology)|domain]] of bacteria. ''Desulfovibrio'' exists in the [[phylum]] of ''Deltaproteobacteria'', mainly composed of aerobic bacteria but includes a branch of [[Obligate anaerobe|strict anaerobes]] with the ability to reduce [[sulfur]] and [[sulfate]].<ref>{{Citation |last=Maheshwari |first=P. |title=Culture-independent and culture-dependent approaches in symbiont analysis |date=2023 |work=Microbial Symbionts |pages=743–763 |url=https://linkinghub.elsevier.com/retrieve/pii/B9780323993340000189 |access-date=2024-04-18 |publisher=Elsevier |language=en |doi=10.1016/b978-0-323-99334-0.00018-9. |isbn=978-0-323-99334-0 |last2=Sankar |first2=P. Murali}}</ref> ''D. alcoholivorans'' belong to the [[family]] ''Desulfovibrionaceae'', bacteria that have been found in [[Mud volcano|mud volcanoes]] and exhibit [[Sulfate-reducing microorganism|sulfur-reduction]].<ref>{{Citation |last=Rabus |first=Ralf |title=A Post-Genomic View of the Ecophysiology, Catabolism and Biotechnological Relevance of Sulphate-Reducing Prokaryotes |date=2015 |work=Advances in Microbial Physiology |volume=66 |pages=55–321 |url=https://linkinghub.elsevier.com/retrieve/pii/S0065291115000053 |access-date=2024-04-18 |publisher=Elsevier |language=en |doi=10.1016/bs.ampbs.2015.05.002. |isbn=978-0-12-803299-2 |last2=Venceslau |first2=Sofia S. |last3=Wöhlbrand |first3=Lars |last4=Voordouw |first4=Gerrit |last5=Wall |first5=Judy D. |last6=Pereira |first6=Inês A.C.}}</ref> ''Desulfovibrionaceae'' exists within the [[Order (taxonomic rank)|order]] of ''Desulfovibrionales'' and includes a myriad of [[Genus|genera]] including ''Desulfovibrio, Desulfobaculum, Desulfocurvus, Bilophila, and Lawsonia''.<ref>{{Citation |last=Kuever |first=Jan |title=The Family Desulfovibrionaceae |date=2014 |work=The Prokaryotes: Deltaproteobacteria and Epsilonproteobacteria |pages=107–133 |editor-last=Rosenberg |editor-first=Eugene |url=https://doi.org/10.1007/978-3-642-39044-9_272 |access-date=2024-04-18 |place=Berlin, Heidelberg |publisher=Springer |language=en |doi=10.1007/978-3-642-39044-9_272 |isbn=978-3-642-39044-9 |editor2-last=DeLong |editor2-first=Edward F. |editor3-last=Lory |editor3-first=Stephen |editor4-last=Stackebrandt |editor4-first=Erko}}</ref> |
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== References == |
== References == |
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Revision as of 20:24, 30 April 2024
| Desulfovibrio alcoholivorans | |
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| Scientific classification | |
| Domain: | |
| Phylum: | |
| Class: | |
| Order: | |
| Family: | |
| Genus: | |
| Species: | D. alcoholivorans
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| Binomial name | |
| Desulfovibrio alcoholivorans Qatibi et al. 1995[1]
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| Type strain | |
| ATCC 49738, DSM 5433, SPSN, VKM B-1761[2] | |
| Synonyms | |
|
Desulfovibrio alcoholovorans[2] | |
Desulfovibrio alcoholivorans is a bacterium from the genus of Desulfovibrio which has been isolated from alcohol industry waste water in France.[1][2][3]
Discovery
Desulfovibrio alcoholivorans was discovered in 1990, France, from an anaerobic fermenter within the alcohol industry, isolated as Desulfovibrio strain SPSN and proposed with the name Desulfivibrio alcoholovorans.[4]
Isolation and Genera
The bacteria was isolated through the agar shake method, which allows determination of whether the species is anaerobic or aerobic using minimum inhibitory concentrations.[5] In this case, anaerobic tubes were used as it was inferred that the bacteria was of the Desulfovibrio genus. Upon discovery, the Hungate technique was employed, which is performed anaerobically to obtain pure cultures through a series of cannulae. After isolated samples were placed into the tubes, they were flooded with nitrogen (N2) and carbon dioxide (C02) gas.[6] Sterile conditions were maintained by sealing the tubes which were continually monitored.[6] Pure samples were inoculated on agar plates composed of 1% glucose, 1% yeast extract, and 1% Biotrypcas.[6] Following inoculation, the sample underwent cell fractionation and a spectroscopy examination.[6] Whole-cell DNA was extracted and the mole ratio of guanine and cytosine was determined using high-performance liquid chromatography.[6] Transmission electron microscopy and phase contrast microscopy were used to study cultures of cells in the proliferation phase.[6] Finally, HPLC analyses were then performed on glycerol, diols, and non-volatile fatty acids.[6] It was found that D. alcoholivorans exhibited optimal growth when kept at around 37°C with a pH between 5.5 and 8.5.[6]
Classification
Desulfovibrio alcoholivorans was found to be a Gram-negative, curved, non-spore forming, and motile organism with metabolic ability to reduce sulfate.[7] These factors supported the characterization of the bacterium under the Desulfovibrio genus.[8] A defining factor that set D. alcoholivorans apart from existing strains was its ability to oxidize 1,3-propanediol into acetate.[7]
Taxonomy and Phylogeny
Desulfovibrio alcoholivorans belong to the domain of bacteria. Desulfovibrio exists in the phylum of Deltaproteobacteria, mainly composed of aerobic bacteria but includes a branch of strict anaerobes with the ability to reduce sulfur and sulfate.[9] D. alcoholivorans belong to the family Desulfovibrionaceae, bacteria that have been found in mud volcanoes and exhibit sulfur-reduction.[10] Desulfovibrionaceae exists within the order of Desulfovibrionales and includes a myriad of genera including Desulfovibrio, Desulfobaculum, Desulfocurvus, Bilophila, and Lawsonia.[11]
References
- ^ a b Parte, A.C. "Desulfovibrio". LPSN.
- ^ a b c "Desulfovibrio alcoholivorans". www.uniprot.org.
- ^ "Details: DSM-5433". www.dsmz.de.
- ^ Qatibi, A. I.; Nivière, V.; Garcia, J. L. (1991-01). "Desulfovibrio alcoholovorans sp. nov., a sulfate-reducing bacterium able to grow on glycerol, 1,2- and 1,3-propanediol". Archives of Microbiology. 155 (2): 143–148. doi:10.1007/BF00248608. ISSN 0302-8933.
{{cite journal}}: Check date values in:|date=(help) - ^ Evans, James B.; Harrell, Lizzie J. (1977-10). "Agar Shake Tube Technique for Simultaneous Determination of Aerobic and Anaerobic Susceptibility to Antibiotics". Antimicrobial Agents and Chemotherapy. 12 (4): 534–536. doi:10.1128/AAC.12.4.534. ISSN 0066-4804. PMC 429960. PMID 335961.
{{cite journal}}: Check date values in:|date=(help)CS1 maint: PMC format (link) - ^ a b c d e f g h Qatibi, A. I.; Nivière, V.; Garcia, J. L. (1991-01). "Desulfovibrio alcoholovorans sp. nov., a sulfate-reducing bacterium able to grow on glycerol, 1,2- and 1,3-propanediol". Archives of Microbiology. 155 (2): 143–148. doi:10.1007/BF00248608. ISSN 0302-8933.
{{cite journal}}: Check date values in:|date=(help) - ^ a b Qatibi, A. I.; Nivière, V.; Garcia, J. L. (1991-01). "Desulfovibrio alcoholovorans sp. nov., a sulfate-reducing bacterium able to grow on glycerol, 1,2- and 1,3-propanediol". Archives of Microbiology. 155 (2): 143–148. doi:10.1007/BF00248608. ISSN 0302-8933.
{{cite journal}}: Check date values in:|date=(help) - ^ Ouattara, A. S.; Patel, B. K. C.; Cayol, J.-L.; Cuzin, N.; Traore, A. S.; Garcia, J.-L. (1999-04-01). "NOTE: Isolation and characterization of Desulfovibrio burkinensis sp. nov. from an African ricefield, and phylogeny of Desulfovibrio alcoholivorans". International Journal of Systematic and Evolutionary Microbiology. 49 (2): 639–643. doi:10.1099/00207713-49-2-639. ISSN 1466-5026.
- ^ Maheshwari, P.; Sankar, P. Murali (2023), "Culture-independent and culture-dependent approaches in symbiont analysis", Microbial Symbionts, Elsevier, pp. 743–763, doi:10.1016/b978-0-323-99334-0.00018-9., ISBN 978-0-323-99334-0, retrieved 2024-04-18
{{citation}}: Check|doi=value (help) - ^ Rabus, Ralf; Venceslau, Sofia S.; Wöhlbrand, Lars; Voordouw, Gerrit; Wall, Judy D.; Pereira, Inês A.C. (2015), "A Post-Genomic View of the Ecophysiology, Catabolism and Biotechnological Relevance of Sulphate-Reducing Prokaryotes", Advances in Microbial Physiology, vol. 66, Elsevier, pp. 55–321, doi:10.1016/bs.ampbs.2015.05.002., ISBN 978-0-12-803299-2, retrieved 2024-04-18
{{citation}}: Check|doi=value (help) - ^ Kuever, Jan (2014), Rosenberg, Eugene; DeLong, Edward F.; Lory, Stephen; Stackebrandt, Erko (eds.), "The Family Desulfovibrionaceae", The Prokaryotes: Deltaproteobacteria and Epsilonproteobacteria, Berlin, Heidelberg: Springer, pp. 107–133, doi:10.1007/978-3-642-39044-9_272, ISBN 978-3-642-39044-9, retrieved 2024-04-18
Further reading
- Ouattara, A. S.; Patel, B. K. C.; Cayol, J.-L.; Cuzin, N.; Traore, A. S.; Garcia, J.-L. (1 April 1999). "NOTE: Isolation and characterization of Desulfovibrio burkinensis sp. nov. from an African ricefield, and phylogeny of Desulfovibrio alcoholivorans". International Journal of Systematic Bacteriology. 49 (2): 639–643. doi:10.1099/00207713-49-2-639. PMID 10319487.
- editors, Don J. Brenner, Noel R. Krieg, James T. Staley (2005). Bergey's manual of systematic bacteriology (2nd ed.). New York: Springer. ISBN 0-387-29298-5.
{{cite book}}:|last1=has generic name (help)CS1 maint: multiple names: authors list (link)
External links
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