List of sequenced algae genomes: Difference between revisions
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|Phytozome<ref name=":1" /> |
|Phytozome<ref name=":1" /> |
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|''[[Micromonas pusilla|Micromonas]]'' |
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''[[Micromonas pusilla|pusilla]]'' CCMP-1545 |
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|Marine |
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[[phytoplankton]] |
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|21.9 Mb |
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|10,575 |
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|Micromonas |
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Genome |
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Consortium |
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|2009<ref>{{Cite journal|last=Worden|first=Alexandra Z.|last2=Lee|first2=Jae-Hyeok|last3=Mock|first3=Thomas|last4=Rouzé|first4=Pierre|last5=Simmons|first5=Melinda P.|last6=Aerts|first6=Andrea L.|last7=Allen|first7=Andrew E.|last8=Cuvelier|first8=Marie L.|last9=Derelle|first9=Evelyne|date=2009-04-10|title=Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas|url=http://science.sciencemag.org/content/324/5924/268|journal=Science|language=en|volume=324|issue=5924|pages=268–272|doi=10.1126/science.1167222|issn=0036-8075|pmid=19359590}}</ref> |
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|Phytozome<ref name=":1" /> |
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The Greenhouse<ref name=":0" /> |
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|''Micromonas'' |
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''pusilla'' |
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RCC299/NOUM17 |
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|Marine |
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[[phytoplankton]] |
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|20.9 Mb |
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|10,056 |
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|[[Joint Genome Institute|Joint Genome]] |
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[[Joint Genome Institute|Institute]] |
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|2009<ref>{{Cite journal|last=Worden|first=Alexandra Z.|last2=Lee|first2=Jae-Hyeok|last3=Mock|first3=Thomas|last4=Rouzé|first4=Pierre|last5=Simmons|first5=Melinda P.|last6=Aerts|first6=Andrea L.|last7=Allen|first7=Andrew E.|last8=Cuvelier|first8=Marie L.|last9=Derelle|first9=Evelyne|date=2009-04-10|title=Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas|url=http://science.sciencemag.org/content/324/5924/268|journal=Science|language=en|volume=324|issue=5924|pages=268–272|doi=10.1126/science.1167222|issn=0036-8075|pmid=19359590}}</ref> |
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|Phytozome<ref name=":1" /> |
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The |
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Greenhouse<ref name=":0" /> |
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|''Monoraphidium'' |
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''neglectum'' |
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|Biofuels |
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|69.7 Mb |
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|16,755 |
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|[[Bielefeld University|Bielefeld]] |
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[[Bielefeld University|University]] |
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|2013<ref>{{Cite journal|last=Bogen|first=Christian|last2=Al-Dilaimi|first2=Arwa|last3=Albersmeier|first3=Andreas|last4=Wichmann|first4=Julian|last5=Grundmann|first5=Michael|last6=Rupp|first6=Oliver|last7=Lauersen|first7=Kyle J|last8=Blifernez-Klassen|first8=Olga|last9=Kalinowski|first9=Jörn|date=2013-12-28|title=Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production|url=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3890519/|journal=BMC Genomics|volume=14|pages=926|doi=10.1186/1471-2164-14-926|issn=1471-2164|pmc=PMC3890519|pmid=24373495}}</ref> |
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|The |
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Greenhouse<ref name=":0" /> |
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|''Ostreococcus'' |
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''lucimarinus'' |
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CCE9901 |
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|Small genome |
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|13.2 Mb |
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|7,603 |
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|[[Joint Genome Institute]] |
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|2007<ref>{{Cite journal|last=Palenik|first=Brian|last2=Grimwood|first2=Jane|last3=Aerts|first3=Andrea|last4=Rouzé|first4=Pierre|last5=Salamov|first5=Asaf|last6=Putnam|first6=Nicholas|last7=Dupont|first7=Chris|last8=Jorgensen|first8=Richard|last9=Derelle|first9=Evelyne|date=2007-05-01|title=The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation|url=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1863510/|journal=Proceedings of the National Academy of Sciences of the United States of America|volume=104|issue=18|pages=7705–7710|doi=10.1073/pnas.0611046104|issn=0027-8424|pmc=PMC1863510|pmid=17460045}}</ref> |
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|''[[Ostreococcus tauri|Ostreococcus]]'' |
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''[[Ostreococcus tauri|tauri]]'' OTH95 |
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|Small genome |
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|12.9 Mb |
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|7,699 |
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|[[Centre national de la recherche scientifique|CNRS]] |
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|2014<ref>{{Cite journal|last=Blanc-Mathieu|first=Romain|last2=Verhelst|first2=Bram|last3=Derelle|first3=Evelyne|last4=Rombauts|first4=Stephane|last5=Bouget|first5=François-Yves|last6=Carré|first6=Isabelle|last7=Château|first7=Annie|last8=Eyre-Walker|first8=Adam|last9=Grimsley|first9=Nigel|date=2014-12-13|title=An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies|url=https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4378021/|journal=BMC Genomics|volume=15|issue=1|doi=10.1186/1471-2164-15-1103|issn=1471-2164|pmc=PMC4378021|pmid=25494611}}</ref> |
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|The Greenhouse<ref name=":0" /> |
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Revision as of 22:13, 13 July 2018
This list of sequenced algae genomes contains algae species known to have publicly available complete genome sequences that have been assembled, annotated and published. Unassembled genomes are not included, nor are organelle only sequences. For plant genomes see the list of sequenced plant genomes. For all kingdoms, see the list of sequenced genomes.
Brown Algae
| Organism
strain |
Type | Relevance | Genome
Size |
Number
of genes predicted |
Organization | Year of
Completion |
Assembly
Status |
Links |
|---|---|---|---|---|---|---|---|---|
| Ectocarpus
siliculosus |
Model Organism | 195.8 Mb | 16,269 | Genoscope | 2012[1] | The Greenhouse[2] |
Glaucophyte
| Organism
strain |
Type | Relevance | Genome
Size |
Number
of genes predicted |
Organization | Year of
Completion |
Assembly
Status |
Links |
|---|---|---|---|---|---|---|---|---|
| Cyanophora
paradoxa |
Model
Organism |
70.2 Mb | 3,900 | Rutgers University | 2012[3] | The Greenhouse[2]
Cyanophora Genome Project[4] |
Green Algae
| Organism
strain |
Type | Relevance | Genome
Size |
Number
of Genes Predicted |
Organization | Year of
Completion |
Assembly
Status |
Links |
|---|---|---|---|---|---|---|---|---|
| Auxenochlorella protothecoides | Biofuels | 22.9 Mb | 7,039 | Tsinghua University | 2014[5] | The Greenhouse[2] | ||
| Bathycoccus prasinos | Comparative analysis | 15.1 Mb | 7,900 | Joint Genome Institute | 2012[6] | |||
| Chlamydomonas reinhardtii CC-503
cw92 mt+ |
Model Organism | 111.1 Mb | 17,741 | Joint Genome Institute | 2017[7] | Phytozome[8]
The Greenhouse[2] | ||
| Chlorella sorokiniana str. 1228 | Biofuels | 61.4 Mb | Los Alamos National Lab | 2018[9] | The Greenhouse[2] | |||
| Chlorella sorokiniana UTEX 1230 | Biofuels | 58.5 Mb | Los Alamos National Lab | 2018[10] | The Greenhouse[2] | |||
| Chlorella sorokiniana DOE1412 | Biofuels | 57.8 Mb | Los Alamos National Lab | 2018[11] | The Greenhouse[2] | |||
| Chlorella variabilis NC64A | Biofuels | 46.2 Mb | 9,791 | 2010[12] | The Greenhouse[2] | |||
| Chlorella vulgaris | Biofuels | 37.3 Mb | National Renewable | 2015[13] | The Greenhouse[2] | |||
| Coccomyxa Subellipsoidea
sp. C-169 |
Biofuels | 48.8 Mb | 9839 | Joint Genome Institute | 2012[14] | Phytozome[8]
The Greenhouse[2] | ||
| Dunaliella salina
CCAP19/18 |
Halophile
Biofuels Beta-carotene and glycerol production |
343.7 Mb | 16,697 | Joint Genome Institute | 2017[15] | Phytozome[8] | ||
| Micromonas
pusilla CCMP-1545 |
Marine | 21.9 Mb | 10,575 | Micromonas
Genome Consortium |
2009[16] | Phytozome[8]
The Greenhouse[2] | ||
| Micromonas
pusilla RCC299/NOUM17 |
Marine | 20.9 Mb | 10,056 | Joint Genome | 2009[17] | Phytozome[8]
The Greenhouse[2] | ||
| Monoraphidium
neglectum |
Biofuels | 69.7 Mb | 16,755 | Bielefeld | 2013[18] | The
Greenhouse[2] | ||
| Ostreococcus
lucimarinus CCE9901 |
Small genome | 13.2 Mb | 7,603 | Joint Genome Institute | 2007[19] | |||
| Ostreococcus
tauri OTH95 |
Small genome | 12.9 Mb | 7,699 | CNRS | 2014[20] | The Greenhouse[2] |
Haptophyte
| Organism
strain |
Type | Relevance | Genome
Size |
Number
of genes predicted |
Organization | Year of
Completion |
Assembly
Status |
Links |
|---|---|---|---|---|---|---|---|---|
| Chrysochromulina | Biofuels | 65.8 Mb | Los Alamos National Laboratory | 2018[21] | The Greenhouse[2] |
Heterokonts/Stramenophiles
| Organism
strain |
Type | Relevance | Genome
Size |
Number
of genes predicted |
Organization | Year of
Completion |
Assembly
Status |
Links |
|---|---|---|---|---|---|---|---|---|
| Aureococcus | Harmful Algal
Bloom |
50.1 Mb | 11,522 | Joint Genome Institute | 2011[22] | The Greenhouse[2] |
Red Algae (Rhodophyte)
| Organism
strain |
Type | Relevance | Genome
Size |
Number
of genes predicted |
Organization | Year of
Completion |
Assembly
Status |
Links |
|---|---|---|---|---|---|---|---|---|
| Cyanidioschyzon
merolae 10D |
Model
organism |
16.5 Mb | 4,775 | National Institute
of Genetics, Japan |
2007[23] | The Greenhouse[2] |
Rhizaria
| Organism
strain |
Type | Relevance | Genome
Size |
Number
of genes predicted |
Organization | Year of
Completion |
Assembly
Status |
Links |
|---|---|---|---|---|---|---|---|---|
Cryptomonad
| Organism
strain |
Type | Relevance | Genome Size | Number
of genes predicted |
Organization | Year of
Completion |
Assembly
Status |
Links |
|---|---|---|---|---|---|---|---|---|
References
- ^ "ASM31002v1 - Genome - Assembly - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-07-11.
- ^ a b c d e f g h i j k l m n o p q "Home | Greenhouse". greenhouse.lanl.gov. Retrieved 2018-07-11.
- ^ Price, Dana C.; Chan, Cheong Xin; Yoon, Hwan Su; Yang, Eun Chan; Qiu, Huan; Weber, Andreas P. M.; Schwacke, Rainer; Gross, Jeferson; Blouin, Nicolas A. (2012-02-17). "Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants". Science. 335 (6070): 843–847. doi:10.1126/science.1213561. ISSN 0036-8075. PMID 22344442.
- ^ "Cyanophora Genome Project". cyanophora.rutgers.edu. Retrieved 2018-07-12.
- ^ Gao, Chunfang; Wang, Yun; Shen, Yue; Yan, Dong; He, Xi; Dai, Junbiao; Wu, Qingyu (2014-07-10). "Oil accumulation mechanisms of the oleaginous microalga Chlorella protothecoides revealed through its genome, transcriptomes, and proteomes". BMC genomics. 15: 582. doi:10.1186/1471-2164-15-582. ISSN 1471-2164. PMC 4111847. PMID 25012212.
{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link) - ^ Moreau, Hervé; Verhelst, Bram; Couloux, Arnaud; Derelle, Evelyne; Rombauts, Stephane; Grimsley, Nigel; Van Bel, Michiel; Poulain, Julie; Katinka, Michaël (2012). "Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage". Genome Biology. 13 (8): R74. doi:10.1186/gb-2012-13-8-r74. ISSN 1465-6906. PMC 3491373. PMID 22925495.
{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link) - ^ "Phytozome". phytozome.jgi.doe.gov. Retrieved 2018-07-12.
- ^ a b c d e "Phytozome". phytozome.jgi.doe.gov. Retrieved 2018-07-12.
- ^ "CSI_1228 - Genome - Assembly - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-07-13.
- ^ "ASM313072v1 - Genome - Assembly - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-07-13.
- ^ "ASM311615v1 - Genome - Assembly - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-07-13.
- ^ Blanc, Guillaume; Duncan, Garry; Agarkova, Irina; Borodovsky, Mark; Gurnon, James; Kuo, Alan; Lindquist, Erika; Lucas, Susan; Pangilinan, Jasmyn (2010-9). "The Chlorella variabilis NC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex[C][W]". The Plant Cell. 22 (9): 2943–2955. doi:10.1105/tpc.110.076406. ISSN 1040-4651. PMC 2965543. PMID 20852019.
{{cite journal}}: Check date values in:|date=(help)CS1 maint: PMC format (link) - ^ "ASM102112v1 - Genome - Assembly - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-07-13.
- ^ "Coccomyxa subellipsoidae v2.0 - Genome - Assembly - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-07-13.
- ^ "Dsal_v1.0 - Genome - Assembly - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-07-13.
- ^ Worden, Alexandra Z.; Lee, Jae-Hyeok; Mock, Thomas; Rouzé, Pierre; Simmons, Melinda P.; Aerts, Andrea L.; Allen, Andrew E.; Cuvelier, Marie L.; Derelle, Evelyne (2009-04-10). "Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas". Science. 324 (5924): 268–272. doi:10.1126/science.1167222. ISSN 0036-8075. PMID 19359590.
- ^ Worden, Alexandra Z.; Lee, Jae-Hyeok; Mock, Thomas; Rouzé, Pierre; Simmons, Melinda P.; Aerts, Andrea L.; Allen, Andrew E.; Cuvelier, Marie L.; Derelle, Evelyne (2009-04-10). "Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas". Science. 324 (5924): 268–272. doi:10.1126/science.1167222. ISSN 0036-8075. PMID 19359590.
- ^ Bogen, Christian; Al-Dilaimi, Arwa; Albersmeier, Andreas; Wichmann, Julian; Grundmann, Michael; Rupp, Oliver; Lauersen, Kyle J; Blifernez-Klassen, Olga; Kalinowski, Jörn (2013-12-28). "Reconstruction of the lipid metabolism for the microalga Monoraphidium neglectum from its genome sequence reveals characteristics suitable for biofuel production". BMC Genomics. 14: 926. doi:10.1186/1471-2164-14-926. ISSN 1471-2164. PMC 3890519. PMID 24373495.
{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link) - ^ Palenik, Brian; Grimwood, Jane; Aerts, Andrea; Rouzé, Pierre; Salamov, Asaf; Putnam, Nicholas; Dupont, Chris; Jorgensen, Richard; Derelle, Evelyne (2007-05-01). "The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation". Proceedings of the National Academy of Sciences of the United States of America. 104 (18): 7705–7710. doi:10.1073/pnas.0611046104. ISSN 0027-8424. PMC 1863510. PMID 17460045.
{{cite journal}}: CS1 maint: PMC format (link) - ^ Blanc-Mathieu, Romain; Verhelst, Bram; Derelle, Evelyne; Rombauts, Stephane; Bouget, François-Yves; Carré, Isabelle; Château, Annie; Eyre-Walker, Adam; Grimsley, Nigel (2014-12-13). "An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies". BMC Genomics. 15 (1). doi:10.1186/1471-2164-15-1103. ISSN 1471-2164. PMC 4378021. PMID 25494611.
{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link) - ^ "ASM288719v1 - Genome - Assembly - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2018-07-11.
- ^ Gobler, Christopher J.; Berry, Dianna L.; Dyhrman, Sonya T.; Wilhelm, Steven W.; Salamov, Asaf; Lobanov, Alexei V.; Zhang, Yan; Collier, Jackie L.; Wurch, Louie L. (2011-03-15). "Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics". Proceedings of the National Academy of Sciences of the United States of America. 108 (11): 4352–4357. doi:10.1073/pnas.1016106108. ISSN 0027-8424. PMC 3060233. PMID 21368207.
{{cite journal}}: CS1 maint: PMC format (link) - ^ Nozaki, Hisayoshi; Takano, Hiroyoshi; Misumi, Osami; Terasawa, Kimihiro; Matsuzaki, Motomichi; Maruyama, Shinichiro; Nishida, Keiji; Yagisawa, Fumi; Yoshida, Yamato (2007-07-10). "A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae". BMC Biology. 5: 28. doi:10.1186/1741-7007-5-28. ISSN 1741-7007. PMC 1955436. PMID 17623057.
{{cite journal}}: CS1 maint: PMC format (link) CS1 maint: unflagged free DOI (link)