Agrococcus: Difference between revisions
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==Species== |
==Species== |
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The genus contains |
The genus contains 9 species, namely<ref name=main/> |
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* ''[[Agrococcus baldri|A. baldri]]'' ( Zlamala ''et al''. 2002, ; [[New Latin]] [[Latin declension|genitive case]] noun ''baldri'', of Baldr, ancient German god of light, referring to the photochromogenic behavior.)<ref>[http://ijs.sgmjournals.org/cgi/content/abstract/52/4/1211 Agrococcus baldri sp. nov., isolated from the air in the 'Virgilkapelle' in Vienna]</ref> |
* ''[[Agrococcus baldri|A. baldri]]'' ( Zlamala ''et al''. 2002, ; [[New Latin]] [[Latin declension|genitive case]] noun ''baldri'', of Baldr, ancient German god of light, referring to the photochromogenic behavior.)<ref>[http://ijs.sgmjournals.org/cgi/content/abstract/52/4/1211 Agrococcus baldri sp. nov., isolated from the air in the 'Virgilkapelle' in Vienna]</ref> |
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* ''[[Agrococcus carbonis|A. carbonis]]'' (Dhanjal ''et al''. 2010, ; [[Latin]] [[Latin declension|genitive case]] noun ''carbonis'' of charcoal or coal; referring to the fact it was isolated from the soil of a coal mine.<ref>{{Cite journal | last1 = Dhanjal | first1 = S. | last2 = Kaur | first2 = I. | last3 = Korpole | first3 = S. | last4 = Schumann | first4 = P. | last5 = Cameotra | first5 = S. S. | last6 = Pukall | first6 = R. | last7 = Klenk | first7 = H. -P. | last8 = Mayilraj | first8 = S. | doi = 10.1099/ijs.0.024745-0 | title = ''Agrococcus carbonis'' sp. nov., isolated from soil of a coal mine | journal = International Journal of Systematic and Evolutionary Microbiology | volume = 61 | issue = 6 | pages = 1253 | year = 2010 | pmid = | pmc = }}</ref> |
* ''[[Agrococcus carbonis|A. carbonis]]'' (Dhanjal ''et al''. 2010, ; [[Latin]] [[Latin declension|genitive case]] noun ''carbonis'' of charcoal or coal; referring to the fact it was isolated from the soil of a coal mine.<ref>{{Cite journal | last1 = Dhanjal | first1 = S. | last2 = Kaur | first2 = I. | last3 = Korpole | first3 = S. | last4 = Schumann | first4 = P. | last5 = Cameotra | first5 = S. S. | last6 = Pukall | first6 = R. | last7 = Klenk | first7 = H. -P. | last8 = Mayilraj | first8 = S. | doi = 10.1099/ijs.0.024745-0 | title = ''Agrococcus carbonis'' sp. nov., isolated from soil of a coal mine | journal = International Journal of Systematic and Evolutionary Microbiology | volume = 61 | issue = 6 | pages = 1253 | year = 2010 | pmid = | pmc = }}</ref> |
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* ''[[Agrococcus jenensis|A. jenensis]]'' ( Groth ''et al''. 1996, (Type species of the genus).; [[New Latin]] [[grammatical gender|masculine gender]] adjective ''jenensis'', of or belonging to the Thuringian town Jena, where the organism was isolated.)<ref name="sgmjournals1"/> |
* ''[[Agrococcus jenensis|A. jenensis]]'' ( Groth ''et al''. 1996, (Type species of the genus).; [[New Latin]] [[grammatical gender|masculine gender]] adjective ''jenensis'', of or belonging to the Thuringian town Jena, where the organism was isolated.)<ref name="sgmjournals1"/> |
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* ''[[Agrococcus lahaulensis|A. lahaulensis]]'' ( Mayilraj ''et al''. 2006, ; [[New Latin]] [[grammatical gender|masculine gender]] adjective ''lahaulensis'', of or pertaining to Lahaul Valley, located in the Indian Himalayas, where the type strain was isolated.)<ref>{{Cite journal | last1 = Mayilraj | first1 = S. | last2 = Suresh | first2 = K. | last3 = Schumann | first3 = P. | last4 = Kroppenstedt | first4 = R. M. | last5 = Saini | first5 = H. S. | title = Agrococcus lahaulensis sp. Nov., isolated from a cold desert of the Indian Himalayas | journal = International Journal of Systematic and Evolutionary Microbiology | volume = 56 | issue = 8 | pages = 1807–1810 | year = 2006 | doi = 10.1099/ijs.0.64247-0 | pmid=16902012}}</ref> |
* ''[[Agrococcus lahaulensis|A. lahaulensis]]'' ( Mayilraj ''et al''. 2006, ; [[New Latin]] [[grammatical gender|masculine gender]] adjective ''lahaulensis'', of or pertaining to Lahaul Valley, located in the Indian Himalayas, where the type strain was isolated.)<ref>{{Cite journal | last1 = Mayilraj | first1 = S. | last2 = Suresh | first2 = K. | last3 = Schumann | first3 = P. | last4 = Kroppenstedt | first4 = R. M. | last5 = Saini | first5 = H. S. | title = Agrococcus lahaulensis sp. Nov., isolated from a cold desert of the Indian Himalayas | journal = International Journal of Systematic and Evolutionary Microbiology | volume = 56 | issue = 8 | pages = 1807–1810 | year = 2006 | doi = 10.1099/ijs.0.64247-0 | pmid=16902012}}</ref> |
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* ''[[Agrococcus pavilionensis|A. pavilionensis]]'' (White III ''et al''. 2018, ; [[New Latin]] [[grammatical gender|masculine gender]] adjective ''pavilionensis'', of or pertaining to Pavilion Lake, located in Southeastern British Columbia, where the type strain was isolated.) <ref>{{Cite journal | last1 = White III | first1 = R. | et al. | title = The Complete Genome and Physiological Analysis of the Microbialite-Dwelling Agrococcus pavilionensis sp. nov; Reveals Genetic Promiscuity and Predicted Adaptations to Environmental Stress | journal = Frontiers of Microbiology | issue = 9 | page = 2180 | year = 2018 | doi = 10.3389/fmicb.2018.02180 | pmid=30374333}}</ref> |
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* ''[[Agrococcus terreus|A. terreus]]'' ( Zhang ''et al''. 2010, ; [[Latin]] [[grammatical gender|masculine gender]] adjective ''terreus'', of earth.)<ref>{{Cite journal | last1 = Zhang | first1 = J. -Y. | last2 = Liu | first2 = X. -Y. | last3 = Liu | first3 = S. -J. | title = Agrococcus terreus sp. Nov. And Micrococcus terreus sp. Nov., isolated from forest soil | journal = International Journal of Systematic and Evolutionary Microbiology | volume = 60 | issue = 8 | pages = 1897–1903 | year = 2009 | doi = 10.1099/ijs.0.013235-0 | pmid=19783614}}</ref> |
* ''[[Agrococcus terreus|A. terreus]]'' ( Zhang ''et al''. 2010, ; [[Latin]] [[grammatical gender|masculine gender]] adjective ''terreus'', of earth.)<ref>{{Cite journal | last1 = Zhang | first1 = J. -Y. | last2 = Liu | first2 = X. -Y. | last3 = Liu | first3 = S. -J. | title = Agrococcus terreus sp. Nov. And Micrococcus terreus sp. Nov., isolated from forest soil | journal = International Journal of Systematic and Evolutionary Microbiology | volume = 60 | issue = 8 | pages = 1897–1903 | year = 2009 | doi = 10.1099/ijs.0.013235-0 | pmid=19783614}}</ref> |
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* ''[[Agrococcus versicolor|A. versicolor]]'' ( Behrendt ''et al''. 2008, ; [[Latin]] [[grammatical gender|masculine gender]] adjective ''versicolor'', colour changing.)<ref>{{Cite journal | last1 = Behrendt | first1 = U. | last2 = Schumann | first2 = P. | last3 = Ulrich | first3 = A. | title = Agrococcus versicolor sp. Nov., an actinobacterium associated with the phyllosphere of potato plants | journal = International Journal of Systematic and Evolutionary Microbiology | volume = 58 | issue = 12 | pages = 2833–2838 | year = 2008 | doi = 10.1099/ijs.0.2008/001610-0 | pmid=19060068}}</ref> |
* ''[[Agrococcus versicolor|A. versicolor]]'' ( Behrendt ''et al''. 2008, ; [[Latin]] [[grammatical gender|masculine gender]] adjective ''versicolor'', colour changing.)<ref>{{Cite journal | last1 = Behrendt | first1 = U. | last2 = Schumann | first2 = P. | last3 = Ulrich | first3 = A. | title = Agrococcus versicolor sp. Nov., an actinobacterium associated with the phyllosphere of potato plants | journal = International Journal of Systematic and Evolutionary Microbiology | volume = 58 | issue = 12 | pages = 2833–2838 | year = 2008 | doi = 10.1099/ijs.0.2008/001610-0 | pmid=19060068}}</ref> |
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Revision as of 00:30, 9 November 2018
| Agrococcus | |
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| Genus: | Agrococcus
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| Binomial name | |
| Agrococcus Groth et al. 1996[1]
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| Type species | |
| A. jenensis | |
Agrococcus is a genus in the phylum Actinobacteria (Bacteria).[2]
Etymology
The name Agrococcus derives from:
Greek noun agros, field or soil; New Latin masculine gender noun coccus (from Greek masculine gender noun kokkos, grain, seed), coccus; New Latin masculine gender noun Agrococcus a coccus from soil.[3]
The first draft genome of the genus Agrococcus was completed by a group at the University of British Columbia that was isolated from modern microbialites found within Pavilion Lake, BC.[4]
Species
The genus contains 9 species, namely[3]
- A. baldri ( Zlamala et al. 2002, ; New Latin genitive case noun baldri, of Baldr, ancient German god of light, referring to the photochromogenic behavior.)[5]
- A. carbonis (Dhanjal et al. 2010, ; Latin genitive case noun carbonis of charcoal or coal; referring to the fact it was isolated from the soil of a coal mine.[6]
- A. casei ( Bora et al. 2007, ;: Latin genitive case noun casei, of cheese, named because the organism was isolated from smear-ripened cheeses.)[7]
- A. citreus ( Wieser et al. 1999, ; Latin masculine gender adjective citreus, of or pertaining to the citron-tree; intended to mean lemon-yellow, describing the lemon-yellow pigmentation.)[8]
- A. jejuensis ( Lee 2008, ; New Latin masculine gender adjective jejuensis, of or belonging to Jeju, Republic of Korea, where the type strain was isolated.)[9]
- A. jenensis ( Groth et al. 1996, (Type species of the genus).; New Latin masculine gender adjective jenensis, of or belonging to the Thuringian town Jena, where the organism was isolated.)[1]
- A. lahaulensis ( Mayilraj et al. 2006, ; New Latin masculine gender adjective lahaulensis, of or pertaining to Lahaul Valley, located in the Indian Himalayas, where the type strain was isolated.)[10]
- A. pavilionensis (White III et al. 2018, ; New Latin masculine gender adjective pavilionensis, of or pertaining to Pavilion Lake, located in Southeastern British Columbia, where the type strain was isolated.) [11]
- A. terreus ( Zhang et al. 2010, ; Latin masculine gender adjective terreus, of earth.)[12]
- A. versicolor ( Behrendt et al. 2008, ; Latin masculine gender adjective versicolor, colour changing.)[13]
See also
References
- ^ a b Agrococcus jenensis gen. nov., sp. nov., a New Genus of Actinomycetes with Diaminobutyric Acid in the Cell Wall
- ^ Classification of Genera AC in LPSN; Parte, Aidan C.; Sardà Carbasse, Joaquim; Meier-Kolthoff, Jan P.; Reimer, Lorenz C.; Göker, Markus (1 November 2020). "List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ". International Journal of Systematic and Evolutionary Microbiology. 70 (11): 5607–5612. doi:10.1099/ijsem.0.004332.
- ^ a b Agrococcus in LPSN; Parte, Aidan C.; Sardà Carbasse, Joaquim; Meier-Kolthoff, Jan P.; Reimer, Lorenz C.; Göker, Markus (1 November 2020). "List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ". International Journal of Systematic and Evolutionary Microbiology. 70 (11): 5607–5612. doi:10.1099/ijsem.0.004332.
- ^ White RA 3rd, Grassa CJ, Suttle CA (July–August 2013). "First Draft Genome Sequence from a Member of the Genus Agrococcus, Isolated from Modern Microbialites". Genome Announcements. 1 (4): e00391-13. doi:10.1128/genomeA.00391-13.
- ^ Agrococcus baldri sp. nov., isolated from the air in the 'Virgilkapelle' in Vienna
- ^ Dhanjal, S.; Kaur, I.; Korpole, S.; Schumann, P.; Cameotra, S. S.; Pukall, R.; Klenk, H. -P.; Mayilraj, S. (2010). "Agrococcus carbonis sp. nov., isolated from soil of a coal mine". International Journal of Systematic and Evolutionary Microbiology. 61 (6): 1253. doi:10.1099/ijs.0.024745-0.
- ^ Bora, N.; Vancanneyt, M.; Gelsomino, R.; Swings, J.; Brennan, N.; Cogan, T. M.; Larpin, S.; Desmasures, N.; Lechner, F. E.; Kroppenstedt, R. M.; Ward, A. C.; Goodfellow, M. (2007). "Agrococcus casei sp. Nov., isolated from the surfaces of smear-ripened cheeses". International Journal of Systematic and Evolutionary Microbiology. 57 (Pt 1): 92–97. doi:10.1099/ijs.0.64270-0. PMID 17220448.
- ^ Agrococcus citreus sp. nov., isolated from a medieval wall painting of the chapel of Castle Herberstein (Austria)
- ^ Lee, S. D. (2008). "Agrococcus jejuensis sp. Nov., isolated from dried seaweed". International Journal of Systematic and Evolutionary Microbiology. 58 (10): 2297–2300. doi:10.1099/ijs.0.65731-0. PMID 18842844.
- ^ Mayilraj, S.; Suresh, K.; Schumann, P.; Kroppenstedt, R. M.; Saini, H. S. (2006). "Agrococcus lahaulensis sp. Nov., isolated from a cold desert of the Indian Himalayas". International Journal of Systematic and Evolutionary Microbiology. 56 (8): 1807–1810. doi:10.1099/ijs.0.64247-0. PMID 16902012.
- ^ White III, R. (2018). "The Complete Genome and Physiological Analysis of the Microbialite-Dwelling Agrococcus pavilionensis sp. nov; Reveals Genetic Promiscuity and Predicted Adaptations to Environmental Stress". Frontiers of Microbiology (9): 2180. doi:10.3389/fmicb.2018.02180. PMID 30374333.
{{cite journal}}: Text "et al." ignored (help)CS1 maint: unflagged free DOI (link) - ^ Zhang, J. -Y.; Liu, X. -Y.; Liu, S. -J. (2009). "Agrococcus terreus sp. Nov. And Micrococcus terreus sp. Nov., isolated from forest soil". International Journal of Systematic and Evolutionary Microbiology. 60 (8): 1897–1903. doi:10.1099/ijs.0.013235-0. PMID 19783614.
- ^ Behrendt, U.; Schumann, P.; Ulrich, A. (2008). "Agrococcus versicolor sp. Nov., an actinobacterium associated with the phyllosphere of potato plants". International Journal of Systematic and Evolutionary Microbiology. 58 (12): 2833–2838. doi:10.1099/ijs.0.2008/001610-0. PMID 19060068.
